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Remove subroutine CALC_PCO2_APPROX_CO3 from carbon_chem.F and add carbonate computation/output to CALC_PCO2_APPROX
avoid unbalanced single quote
o add min/max bounds to dic, temp, salt, alk, PO4 before passing to pH solver. Need #ifdef DIC_BOUNDS to use (i.e. default to not having bounds). pH solver was blowing up for some extreme values.
o make sure Schmidt number isn't negative (will happen if temp>39C)
o add fix to two bugs in handling water vapour pressure in carbonate chemistry and air-sea fluxes. Found by Val Bennington and Galen McKinley NOTE: tutorial_global_oce_biogeo has these bugs still on
add position indices & iter to argument list of 3 S/R CALC_PCO2* (normally not used but useful for debugging)
avoid unused variables.
add argument "myThid" where missing
Moving dic options to DIC_OPTIONS.h
Merging DIC_ABIOTIC.h and DIC_BIOTIC.h
o adding flexibility for determining atmospheric pCO2 (now defaults to 278d-6, can be read in from data.gchem, can be read in from file for time-varing values, and can be linked to interactive well mixed atmospheric box)
Add tons of "_d 0" (which changes the outputs)
Isolate some computation useful for both CO2 and O2 fluxes (avoid doing some stuff twice)
CPP option to do virtual flux of dic and alkalinity as coded in dic package
- dic_fields_load.F: remove exchanges, reorder IFs and DOs, remove limit on FIce. - remove useless loading of pLoad in o2_surfforcing.F
fix USE_PLOAD (pLoad from atm. model is an anomaly)
o add (and change) flags so that pkg/dic can uses Qsw, Pload from FFIELDS. also ATMOSCO2 from the coupler (for times when coupled to an atmospheric model.
o changes to make dic code more adjoint friendly:
- standardize how tracers are passed from dic_biotic_forcing to
other subroutines
- add a tanh function to take the place of min(x,y) in bio_export.F
and fe_chem.F.
o change which common block "WIND" is in, and where piston velocity (pisvel) is calcuated. Easier for coupling to atmsopheric model.
o dic code now does no calculations on the overlap regions
o include ice influence on air-sea fluxes, and more cleanup
o GALK and GDC need to be tendencies (not surface forcings)
replace surfaceTendencyPtr by surfaceForcingPtr
max number of passive tracers is now defined in PTRACERS_SIZE.h
o clean up and add extra documentation
o first check-in for the "branch-genmake2" merge
o verification suite as run on shelley (gcc 3.2.2):
Wed Oct 8 23:42:29 EDT 2003
T S U V
G D M c m s m s m s m s
E p a R g m m e . m m e . m m e . m m e .
N n k u 2 i a a d i a a d i a a d i a a d
2 d e n d n x n . n x n . n x n . n x n .
OPTFILE=NONE
Y Y Y Y 13 16 16 16 0 16 16 16 16 16 16 16 16 13 12 0 0 pass adjustment.128x64x1
Y Y Y Y 16 16 16 16 0 16 16 16 16 16 16 0 0 16 16 0 0 pass adjustment.cs-32x32x1
Y Y Y Y 16 16 16 16 0 16 16 16 16 16 16 22 0 16 16 22 0 pass adjust_nlfs.cs-32x32x1
Y Y Y Y -- 13 13 16 16 13 13 13 13 16 16 16 16 16 16 16 16 N/O advect_cs
Y Y Y Y -- 22 16 16 16 16 16 16 13 16 16 16 16 16 16 16 16 N/O advect_xy
Y Y Y Y -- 13 16 13 16 16 16 16 16 16 16 22 16 16 16 16 16 N/O advect_xz
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass aim.5l_cs
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 16 16 16 16 13 16 pass aim.5l_Equatorial_Channel
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 13 16 16 13 13 16 pass aim.5l_LatLon
Y Y Y Y 13 16 16 16 16 16 16 16 16 16 13 12 13 13 16 13 16 pass exp0
Y Y Y Y 14 16 16 16 16 16 16 16 22 16 16 16 13 16 16 22 16 pass exp1
Y Y Y Y 13 13 16 13 16 16 16 16 16 13 13 16 16 13 13 13 13 pass exp2
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass exp4
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 22 16 16 16 22 16 pass exp5
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass front_relax
Y Y Y Y 14 16 16 13 13 16 16 13 13 16 13 13 16 12 13 13 16 pass global_ocean.90x40x15
Y Y Y Y 10 16 16 13 13 16 13 16 16 13 13 13 13 16 16 13 16 FAIL global_ocean.cs32x15
Y Y Y Y 6 11 12 13 13 12 13 16 13 9 9 9 9 10 9 9 11 FAIL global_ocean_pressure
Y Y Y Y 14 16 16 13 16 16 16 13 13 13 13 13 16 12 16 13 16 pass global_with_exf
Y Y Y Y 14 16 16 16 16 16 16 16 16 11 13 22 13 16 16 9 16 pass hs94.128x64x5
Y Y Y Y 13 16 16 16 16 16 16 16 16 11 16 16 16 13 16 22 13 pass hs94.1x64x5
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 13 13 16 16 22 13 pass hs94.cs-32x32x5
Y Y Y Y 10 10 16 13 13 16 16 16 22 16 13 13 13 13 13 22 13 FAIL ideal_2D_oce
Y Y Y Y 8 16 16 16 16 16 16 16 16 13 13 8 16 16 16 16 16 FAIL internal_wave
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 13 22 13 13 13 22 16 pass inverted_barometer
Y Y Y Y 12 16 16 16 16 16 16 16 16 16 13 12 13 13 13 13 13 FAIL lab_sea
Y Y Y Y 11 16 16 16 16 16 16 16 13 13 13 12 13 16 13 12 13 FAIL natl_box
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass plume_on_slope
Y Y Y Y 13 16 16 16 16 13 16 16 16 16 16 16 16 13 16 16 16 pass solid-body.cs-32x32x1
changes to keep current with gchem pkg, and to be adjointable
add variable Si; fix bugs in dic_diags, dic_fields_load
initial checking in biogeochemistry packages
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