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C $Header: /u/gcmpack/MITgcm/pkg/dic/dic_biotic_forcing.F,v 1.25 2010/01/02 22:59:16 jmc Exp $ |
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C $Name: $ |
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|
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#include "DIC_OPTIONS.h" |
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|
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CBOP |
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C !ROUTINE: DIC_BIOTIC_FORCING |
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|
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C !INTERFACE: ========================================================== |
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SUBROUTINE DIC_BIOTIC_FORCING( PTR_DIC, PTR_ALK, PTR_PO4, |
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& PTR_DOP, |
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#ifdef ALLOW_O2 |
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& PTR_O2, |
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#endif |
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#ifdef ALLOW_FE |
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& PTR_FE, |
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#endif |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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|
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C !DESCRIPTION: |
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C updates all the tracers for the effects of air-sea exchange, biological |
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c activity and remineralization |
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|
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C !USES: =============================================================== |
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IMPLICIT NONE |
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#include "SIZE.h" |
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#include "DYNVARS.h" |
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#include "EEPARAMS.h" |
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#include "PARAMS.h" |
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#include "GRID.h" |
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#include "DIC_VARS.h" |
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#include "PTRACERS_SIZE.h" |
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#include "PTRACERS_PARAMS.h" |
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|
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C !INPUT PARAMETERS: =================================================== |
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C myThid :: thread number |
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C myIter :: current timestep |
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C myTime :: current time |
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C PTR_DIC :: dissolced inorganic carbon |
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C PTR_ALK :: alkalinity |
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C PTR_PO4 :: phosphate |
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c PTR_DOP :: dissolve organic phosphurous |
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c PTR_O2 :: oxygen |
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C PTR_FE :: iron |
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INTEGER myIter |
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_RL myTime |
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INTEGER myThid |
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_RL PTR_DIC(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL PTR_ALK(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL PTR_PO4(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL PTR_DOP(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#ifdef ALLOW_O2 |
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_RL PTR_O2(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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#ifdef ALLOW_FE |
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_RL PTR_FE(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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INTEGER bi, bj, imin, imax, jmin, jmax |
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|
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#ifdef ALLOW_PTRACERS |
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#ifdef DIC_BIOTIC |
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|
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C !LOCAL VARIABLES: ==================================================== |
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C i,j,k :: loop indices |
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C G* :: tendency term for the tracers |
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C SURA :: tendency of alkalinity due to freshwater |
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C SURC :: tendency of DIC due to air-sea exchange |
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C and virtual flux |
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C SURO :: tendency of O2 due to air-sea exchange |
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C GPO4 :: tendency of PO4 due to biological productivity, |
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C exchange with DOP pool and reminerization |
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C CAR :: carbonate changes due to biological |
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C productivity and remineralization |
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C BIOac :: biological productivity |
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C RDOP :: DOP sink due to remineralization |
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C pflux :: changes to PO4 due to flux and remineralization |
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C CAR_S :: carbonate sink |
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C cflux :: carbonate changes due to flux and remineralization |
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C freefe :: iron not bound to ligand |
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_RL GDIC(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL GALK(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL GPO4(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL GDOP(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL SURA(1-OLx:sNx+OLx,1-OLy:sNy+OLy) |
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_RL SURC(1-OLx:sNx+OLx,1-OLy:sNy+OLy) |
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_RL SURO(1-OLx:sNx+OLx,1-OLy:sNy+OLy) |
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_RL CAR(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL BIOac(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL RDOP(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL pflux(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL exportflux(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL CAR_S(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL cflux(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#ifdef ALLOW_O2 |
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_RL GO2(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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#ifdef ALLOW_FE |
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_RL GFE(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL freefe(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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INTEGER i,j,k |
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#ifdef CAR_DISS |
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INTEGER nCALCITEstep |
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#endif |
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CEOP |
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|
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DO k=1,Nr |
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DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
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RDOP(i,j,k) =0. _d 0 |
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GDIC(i,j,k) =0. _d 0 |
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GALK(i,j,k) =0. _d 0 |
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GPO4(i,j,k) =0. _d 0 |
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GDOP(i,j,k) =0. _d 0 |
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CAR(i,j,k) =0. _d 0 |
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BIOac(i,j,k) =0. _d 0 |
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pflux(i,j,k) =0. _d 0 |
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exportflux(i,j,k)=0. _d 0 |
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cflux(i,j,k) =0. _d 0 |
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CAR_S(i,j,k) =0. _d 0 |
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#ifdef ALLOW_O2 |
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GO2(i,j,k) =0. _d 0 |
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#endif |
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#ifdef ALLOW_FE |
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GFE(i,j,k) =0. _d 0 |
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freefe(i,j,k) =0. _d 0 |
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#endif |
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ENDDO |
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ENDDO |
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ENDDO |
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DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
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SURA(i,j) =0. _d 0 |
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SURC(i,j) =0. _d 0 |
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SURO(i,j) =0. _d 0 |
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ENDDO |
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ENDDO |
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|
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C carbon air-sea interaction |
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CALL DIC_SURFFORCING( PTR_DIC, PTR_ALK, PTR_PO4, SURC, |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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|
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C alkalinity air-sea interaction |
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CALL ALK_SURFFORCING( PTR_ALK, SURA, |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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|
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#ifdef ALLOW_O2 |
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C oxygen air-sea interaction |
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CALL O2_SURFFORCING( PTR_O2, SURO, |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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#endif |
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|
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#ifdef ALLOW_FE |
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C find free iron |
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CALL FE_CHEM(bi,bj,iMin,iMax,jMin,jMax, PTR_FE, freefe, |
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& myIter, mythid) |
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#endif |
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|
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|
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C biological activity |
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CALL BIO_EXPORT( PTR_PO4 , |
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#ifdef ALLOW_FE |
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I PTR_FE, |
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#endif |
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I BIOac, |
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I bi,bj,imin,imax,jmin,jmax, |
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I myIter,myTime,myThid) |
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|
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C flux of po4 from layers with biological activity |
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CALL PHOS_FLUX( BIOac, pflux, exportflux, |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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|
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C- Carbonate sink |
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DO k=1,Nr |
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DO j=jmin,jmax |
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DO i=imin,imax |
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CAR_S(i,j,k)=BIOac(i,j,k)*R_CP*rain_ratio(i,j,bi,bj)* |
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& (1. _d 0-DOPfraction) |
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ENDDO |
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ENDDO |
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ENDDO |
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|
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C carbonate |
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#ifdef CAR_DISS |
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C dissolution only below saturation horizon |
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C code following method by Karsten Friis |
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nCALCITEstep = 3600 |
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IF(myIter .lt. (nIter0+5) .or. |
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& mod(myIter,nCALCITEstep) .eq. 0)THEN |
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CALL CALCITE_SATURATION(PTR_DIC, PTR_ALK, PTR_PO4, |
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I bi,bj,imin,imax,jmin,jmax, |
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I myIter,myTime,myThid) |
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ENDIF |
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c |
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CALL CAR_FLUX_OMEGA_TOP( BIOac, cflux, |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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#else |
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C old OCMIP way |
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CALL CAR_FLUX( CAR_S, cflux, |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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#endif |
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|
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C add all tendencies for PO4, DOP, ALK, DIC |
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DO k=1,Nr |
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DO j=jmin,jmax |
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DO i=imin,imax |
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#ifdef DIC_NO_NEG |
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RDOP(i,j,k)= MAX(maskC(i,j,k,bi,bj)*KDOPRemin*PTR_DOP(i,j,k) |
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& ,0. _d 0) |
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#else |
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RDOP(i,j,k)= maskC(i,j,k,bi,bj)*KDOPRemin*PTR_DOP(i,j,k) |
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#endif |
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GPO4(i,j,k)=-BIOac(i,j,k)+pflux(i,j,k) + RDOP(i,j,k) |
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|
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car(i,j,k) = cflux(i,j,k) - CAR_S(i,j,k) |
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|
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GDOP(i,j,k)=+BIOac(i,j,k)*DOPfraction - RDOP(i,j,k) |
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|
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GALK(i,j,k)=+2. _d 0 *car(i,j,k)-R_NP*GPO4(i,j,k) |
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|
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GDIC(i,j,k)=car(i,j,k)+R_CP*GPO4(i,j,k) |
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|
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#ifdef ALLOW_O2 |
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if (PTR_O2(i,j,k).GT.O2crit) then |
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GO2(i,j,k)= R_OP*GPO4(i,j,k) |
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else |
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GO2(i,j,k)= 0. _d 0 |
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endif |
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#endif |
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#ifdef ALLOW_FE |
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GFE(i,j,k) = R_FeP*GPO4(i,j,k) |
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& -Kscav*freefe(i,j,k) |
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#endif |
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ENDDO |
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ENDDO |
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ENDDO |
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|
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DO j=jmin,jmax |
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DO i=imin,imax |
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GALK(i,j,1)=GALK(i,j,1)+SURA(i,j) |
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GDIC(i,j,1)=GDIC(i,j,1)+SURC(i,j) |
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#ifdef ALLOW_O2 |
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GO2(i,j,1) =GO2(i,j,1)+SURO(i,j) |
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#endif |
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#ifdef ALLOW_FE |
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GFE(i,j,1)=GFE(i,j,1)+alpfe* |
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& InputFe(i,j,bi,bj)*recip_drF(1) |
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& *recip_hFacC(i,j,1,bi,bj) |
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#endif |
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ENDDO |
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ENDDO |
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|
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|
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C update |
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DO k=1,Nr |
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DO j=jmin,jmax |
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DO i=imin,imax |
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PTR_DIC(i,j,k)= |
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& PTR_DIC(i,j,k)+GDIC(i,j,k)*PTRACERS_dTLev(k) |
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PTR_ALK(i,j,k)= |
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& PTR_ALK(i,j,k)+GALK(i,j,k)*PTRACERS_dTLev(k) |
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PTR_PO4(i,j,k)= |
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& PTR_PO4(i,j,k)+GPO4(i,j,k)*PTRACERS_dTLev(k) |
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PTR_DOP(i,j,k)= |
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& PTR_DOP(i,j,k)+GDOP(i,j,k)*PTRACERS_dTLev(k) |
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#ifdef ALLOW_O2 |
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PTR_O2(i,j,k)= |
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& PTR_O2(i,j,k)+GO2(i,j,k)*PTRACERS_dTLev(k) |
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#endif |
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#ifdef ALLOW_FE |
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PTR_FE(i,j,k)= |
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& PTR_FE(i,j,k)+GFE(i,j,k)*PTRACERS_dTLev(k) |
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#endif |
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ENDDO |
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ENDDO |
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ENDDO |
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|
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#ifdef ALLOW_FE |
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#ifdef MINFE |
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c find free iron and get rid of insoluble part |
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call fe_chem(bi,bj,iMin,iMax,jMin,jMax, PTR_FE, freefe, |
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& myIter, mythid) |
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#endif |
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#endif |
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|
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|
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#ifdef ALLOW_TIMEAVE |
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C save averages |
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IF ( taveFreq.GT.0. ) THEN |
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DO k=1,Nr |
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DO j=jmin,jmax |
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DO i=imin,imax |
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BIOave(i,j,k,bi,bj) =BIOave(i,j,k,bi,bj)+ |
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& BIOac(i,j,k)*deltaTclock |
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CARave(i,j,k,bi,bj) =CARave(i,j,k,bi,bj)+ |
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& CAR(i,j,k)*deltaTclock |
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OmegaCave(i,j,k,bi,bj)=OmegaCave(i,j,k,bi,bj)+ |
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& OmegaC(i,j,k,bi,bj)*deltaTclock |
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pfluxave(i,j,k,bi,bj) =pfluxave(i,j,k,bi,bj) + |
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& pflux(i,j,k)*deltaTclock |
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epfluxave(i,j,k,bi,bj)=epfluxave(i,j,k,bi,bj) + |
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& exportflux(i,j,k)*deltaTclock |
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cfluxave(i,j,k,bi,bj) =cfluxave(i,j,k,bi,bj) + |
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& cflux(i,j,k)*deltaTclock |
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ENDDO |
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ENDDO |
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ENDDO |
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DO j=jmin,jmax |
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DO i=imin,imax |
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SURave(i,j,bi,bj) =SURave(i,j,bi,bj)+ |
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& SURC(i,j)*deltaTclock |
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#ifdef ALLOW_O2 |
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SUROave(i,j,bi,bj) =SUROave(i,j,bi,bj)+ |
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& SURO(i,j)*deltaTclock |
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#endif |
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pCO2ave(i,j,bi,bj) =pCO2ave(i,j,bi,bj)+ |
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& pCO2(i,j,bi,bj)*deltaTclock |
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pHave(i,j,bi,bj) =pHave(i,j,bi,bj)+ |
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& pH(i,j,bi,bj)*deltaTclock |
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fluxCO2ave(i,j,bi,bj)=fluxCO2ave(i,j,bi,bj)+ |
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& fluxCO2(i,j,bi,bj)*deltaTclock |
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ENDDO |
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ENDDO |
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DIC_timeAve(bi,bj) = DIC_timeAve(bi,bj)+deltaTclock |
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ENDIF |
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#endif /* ALLOW_TIMEAVE*/ |
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|
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C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----| |
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|
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#ifdef ALLOW_DIAGNOSTICS |
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|
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IF ( useDiagnostics ) THEN |
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|
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CALL DIAGNOSTICS_FILL(BIOac ,'DICBIOA ',0,Nr,2,bi,bj,myThid) |
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CALL DIAGNOSTICS_FILL(CAR ,'DICCARB ',0,Nr,2,bi,bj,myThid) |
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CALL DIAGNOSTICS_FILL(pCO2 ,'DICPCO2 ',0,1 ,1,bi,bj,myThid) |
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CALL DIAGNOSTICS_FILL(fluxCO2,'DICCFLX ',0,1 ,1,bi,bj,myThid) |
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CALL DIAGNOSTICS_FILL(pH ,'DICPHAV ',0,1 ,1,bi,bj,myThid) |
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CALL DIAGNOSTICS_FILL(SURC ,'DICTFLX ',0,1 ,2,bi,bj,myThid) |
| 347 |
#ifdef ALLOW_O2 |
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CALL DIAGNOSTICS_FILL(SURO ,'DICOFLX ',0,1 ,2,bi,bj,myThid) |
| 349 |
#endif |
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|
| 351 |
ENDIF |
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|
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#endif /* ALLOW_DIAGNOSTICS */ |
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|
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#endif /* DIC_BIOTIC */ |
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#endif /* ALLOW_PTRACERS */ |
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|
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RETURN |
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END |
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