| 1 |
dfer |
1.18 |
C $Header: /u/gcmpack/MITgcm/pkg/dic/dic_biotic_forcing.F,v 1.17 2007/10/26 21:08:13 dfer Exp $ |
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jmc |
1.7 |
C $Name: $ |
| 3 |
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edhill |
1.4 |
#include "DIC_OPTIONS.h" |
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stephd |
1.1 |
#include "GCHEM_OPTIONS.h" |
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stephd |
1.6 |
CBOP |
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C !ROUTINE: DIC_BIOTIC_FORCING |
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C !INTERFACE: ========================================================== |
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stephd |
1.1 |
SUBROUTINE DIC_BIOTIC_FORCING( PTR_DIC, PTR_ALK, PTR_PO4, |
| 12 |
stephd |
1.14 |
& PTR_DOP, |
| 13 |
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#ifdef ALLOW_O2 |
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& PTR_O2, |
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#endif |
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stephd |
1.1 |
#ifdef ALLOW_FE |
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& PTR_FE, |
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#endif |
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& bi,bj,imin,imax,jmin,jmax, |
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& myIter,myTime,myThid) |
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stephd |
1.6 |
C !DESCRIPTION: |
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C updates all the tracers for the effects of air-sea exchange, biological |
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c activity and remineralization |
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C !USES: =============================================================== |
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stephd |
1.1 |
IMPLICIT NONE |
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#include "SIZE.h" |
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#include "DYNVARS.h" |
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#include "EEPARAMS.h" |
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#include "PARAMS.h" |
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#include "GRID.h" |
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#include "DIC_BIOTIC.h" |
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#include "DIC_ABIOTIC.h" |
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stephd |
1.6 |
C !INPUT PARAMETERS: =================================================== |
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C myThid :: thread number |
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C myIter :: current timestep |
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C myTime :: current time |
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C PTR_DIC :: dissolced inorganic carbon |
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C PTR_ALK :: alkalinity |
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C PTR_PO4 :: phosphate |
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c PTR_DOP :: dissolve organic phosphurous |
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c PTR_O2 :: oxygen |
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C PTR_FE :: iron |
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stephd |
1.1 |
INTEGER myIter |
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_RL myTime |
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INTEGER myThid |
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_RL PTR_DIC(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL PTR_ALK(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL PTR_PO4(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL PTR_DOP(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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stephd |
1.14 |
#ifdef ALLOW_O2 |
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stephd |
1.1 |
_RL PTR_O2(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
| 55 |
stephd |
1.14 |
#endif |
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stephd |
1.1 |
#ifdef ALLOW_FE |
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_RL PTR_FE(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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INTEGER bi, bj, imin, imax, jmin, jmax |
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#ifdef ALLOW_PTRACERS |
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#ifdef DIC_BIOTIC |
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stephd |
1.6 |
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C !LOCAL VARIABLES: ==================================================== |
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C i,j,k :: loop indices |
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C G* :: tendency term for the tracers |
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C SURA :: tendency of alkalinity due to freshwater |
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C SURC :: tendency of DIC due to air-sea exchange |
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C and virtual flux |
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C SURO :: tendency of O2 due to air-sea exchange |
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dfer |
1.16 |
C GPO4 :: tendency of PO4 due to biological productivity, |
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stephd |
1.6 |
C exchange with DOP pool and reminerization |
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C CAR :: carbonate changes due to biological |
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dfer |
1.18 |
C productivity and remineralization |
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dfer |
1.15 |
C BIOac :: biological productivity |
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dfer |
1.18 |
C RDOP :: DOP sink due to remineralization |
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C pflux :: changes to PO4 due to flux and remineralization |
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C CAR_S :: carbonate sink |
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C cflux :: carbonate changes due to flux and remineralization |
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C freefe :: iron not bound to ligand |
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stephd |
1.1 |
_RL GDIC(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL GALK(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL GPO4(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL GDOP(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL SURA(1-OLx:sNx+OLx,1-OLy:sNy+OLy) |
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_RL SURC(1-OLx:sNx+OLx,1-OLy:sNy+OLy) |
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_RL SURO(1-OLx:sNx+OLx,1-OLy:sNy+OLy) |
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_RL CAR(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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dfer |
1.15 |
_RL BIOac(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
| 90 |
dfer |
1.18 |
_RL RDOP(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
| 91 |
stephd |
1.1 |
_RL pflux(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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stephd |
1.13 |
_RL exportflux(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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dfer |
1.18 |
_RL CAR_S(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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stephd |
1.1 |
_RL cflux(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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stephd |
1.14 |
#ifdef ALLOW_O2 |
| 96 |
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_RL GO2(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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#endif |
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stephd |
1.1 |
#ifdef ALLOW_FE |
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_RL GFE(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
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_RL freefe(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr) |
| 101 |
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#endif |
| 102 |
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INTEGER I,J,k |
| 103 |
stephd |
1.8 |
INTEGER nCALCITEstep |
| 104 |
stephd |
1.6 |
CEOP |
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stephd |
1.11 |
jmin=1 |
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jmax=sNy |
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imin=1 |
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imax=sNx |
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stephd |
1.1 |
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DO k=1,Nr |
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DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
| 113 |
dfer |
1.18 |
RDOP(i,j,k) =0. _d 0 |
| 114 |
dfer |
1.15 |
GDIC(i,j,k) =0. _d 0 |
| 115 |
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GALK(i,j,k) =0. _d 0 |
| 116 |
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GPO4(i,j,k) =0. _d 0 |
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GDOP(i,j,k) =0. _d 0 |
| 118 |
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CAR(i,j,k) =0. _d 0 |
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BIOac(i,j,k) =0. _d 0 |
| 120 |
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pflux(i,j,k) =0. _d 0 |
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exportflux(i,j,k)=0. _d 0 |
| 122 |
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cflux(i,j,k) =0. _d 0 |
| 123 |
dfer |
1.18 |
CAR_S(i,j,k) =0. _d 0 |
| 124 |
stephd |
1.14 |
#ifdef ALLOW_O2 |
| 125 |
dfer |
1.15 |
GO2(i,j,k) =0. _d 0 |
| 126 |
stephd |
1.14 |
#endif |
| 127 |
stephd |
1.1 |
#ifdef ALLOW_FE |
| 128 |
dfer |
1.15 |
GFE(i,j,k) =0. _d 0 |
| 129 |
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freefe(i,j,k) =0. _d 0 |
| 130 |
stephd |
1.1 |
#endif |
| 131 |
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ENDDO |
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ENDDO |
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ENDDO |
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dfer |
1.16 |
DO j=1-OLy,sNy+OLy |
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DO i=1-OLx,sNx+OLx |
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SURA(i,j) =0. _d 0 |
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SURC(i,j) =0. _d 0 |
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SURO(i,j) =0. _d 0 |
| 139 |
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ENDDO |
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ENDDO |
| 141 |
stephd |
1.1 |
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| 142 |
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c carbon air-sea interaction |
| 143 |
stephd |
1.12 |
CALL DIC_SURFFORCING( PTR_DIC, PTR_ALK, PTR_PO4, SURC, |
| 144 |
stephd |
1.1 |
& bi,bj,imin,imax,jmin,jmax, |
| 145 |
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& myIter,myTime,myThid) |
| 146 |
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| 147 |
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c alkalinity air-sea interaction |
| 148 |
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CALL ALK_SURFFORCING( PTR_ALK, SURA, |
| 149 |
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& bi,bj,imin,imax,jmin,jmax, |
| 150 |
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& myIter,myTime,myThid) |
| 151 |
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| 152 |
stephd |
1.14 |
#ifdef ALLOW_O2 |
| 153 |
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c oxygen air-sea interaction |
| 154 |
stephd |
1.1 |
CALL O2_SURFFORCING( PTR_O2, SURO, |
| 155 |
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& bi,bj,imin,imax,jmin,jmax, |
| 156 |
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& myIter,myTime,myThid) |
| 157 |
stephd |
1.14 |
#endif |
| 158 |
stephd |
1.1 |
|
| 159 |
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#ifdef ALLOW_FE |
| 160 |
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c find free iron |
| 161 |
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call fe_chem(bi,bj,iMin,iMax,jMin,jMax, PTR_FE, freefe, |
| 162 |
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& myIter, mythid) |
| 163 |
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#endif |
| 164 |
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| 165 |
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| 166 |
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c biological activity |
| 167 |
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CALL BIO_EXPORT( PTR_PO4 , |
| 168 |
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#ifdef ALLOW_FE |
| 169 |
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I PTR_FE, |
| 170 |
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#endif |
| 171 |
dfer |
1.15 |
I BIOac, |
| 172 |
stephd |
1.1 |
I bi,bj,imin,imax,jmin,jmax, |
| 173 |
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I myIter,myTime,myThid) |
| 174 |
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| 175 |
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c flux of po4 from layers with biological activity |
| 176 |
dfer |
1.15 |
CALL PHOS_FLUX( BIOac, pflux, exportflux, |
| 177 |
stephd |
1.1 |
& bi,bj,imin,imax,jmin,jmax, |
| 178 |
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& myIter,myTime,myThid) |
| 179 |
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| 180 |
dfer |
1.18 |
C- Carbonate sink |
| 181 |
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DO k=1,Nr |
| 182 |
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DO j=jmin,jmax |
| 183 |
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DO i=imin,imax |
| 184 |
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CAR_S(i,j,k)=BIOac(i,j,k)*R_CP*rain_ratio(i,j,bi,bj)* |
| 185 |
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& (1. _d 0-DOPfraction) |
| 186 |
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ENDDO |
| 187 |
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ENDDO |
| 188 |
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ENDDO |
| 189 |
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| 190 |
stephd |
1.1 |
c carbonate |
| 191 |
stephd |
1.8 |
#ifdef CAR_DISS |
| 192 |
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c dissolution only below saturation horizon |
| 193 |
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c code following methid by Karsten Friis |
| 194 |
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nCALCITEstep = 3600 |
| 195 |
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IF(myIter .lt. (nIter0+5) .or. |
| 196 |
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& mod(myIter,nCALCITEstep) .eq. 0)THEN |
| 197 |
stephd |
1.12 |
CALL CALCITE_SATURATION(PTR_DIC, PTR_ALK, PTR_PO4, |
| 198 |
stephd |
1.8 |
I bi,bj,imin,imax,jmin,jmax, |
| 199 |
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I myIter,myTime,myThid) |
| 200 |
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ENDIF |
| 201 |
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c |
| 202 |
dfer |
1.15 |
CALL CAR_FLUX_OMEGA_TOP( BIOac, cflux, |
| 203 |
stephd |
1.8 |
& bi,bj,imin,imax,jmin,jmax, |
| 204 |
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& myIter,myTime,myThid) |
| 205 |
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#else |
| 206 |
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c old OCMIP way |
| 207 |
dfer |
1.18 |
CALL CAR_FLUX( CAR_S, cflux, |
| 208 |
stephd |
1.1 |
& bi,bj,imin,imax,jmin,jmax, |
| 209 |
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& myIter,myTime,myThid) |
| 210 |
stephd |
1.8 |
#endif |
| 211 |
stephd |
1.1 |
|
| 212 |
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c add all tendencies for PO4, DOP, ALK, DIC |
| 213 |
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DO k=1,Nr |
| 214 |
stephd |
1.11 |
DO j=jmin,jmax |
| 215 |
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DO i=imin,imax |
| 216 |
dfer |
1.18 |
RDOP(i,j,k)= maskC(i,j,k,bi,bj)*KDOPRemin*PTR_DOP(i,j,k) |
| 217 |
dfer |
1.16 |
|
| 218 |
dfer |
1.18 |
GPO4(i,j,k)=-BIOac(i,j,k)+pflux(i,j,k) + RDOP(i,j,k) |
| 219 |
dfer |
1.16 |
|
| 220 |
dfer |
1.18 |
car(i,j,k) = cflux(i,j,k) - CAR_S(i,j,k) |
| 221 |
dfer |
1.16 |
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| 222 |
dfer |
1.18 |
GDOP(i,j,k)=+BIOac(i,j,k)*DOPfraction - RDOP(i,j,k) |
| 223 |
dfer |
1.16 |
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| 224 |
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GALK(i,j,k)=+2. _d 0 *car(i,j,k)-R_NP*GPO4(i,j,k) |
| 225 |
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| 226 |
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GDIC(i,j,k)=car(i,j,k)+R_CP*GPO4(i,j,k) |
| 227 |
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| 228 |
stephd |
1.14 |
#ifdef ALLOW_O2 |
| 229 |
dfer |
1.16 |
if (PTR_O2(i,j,k).GT.O2crit) then |
| 230 |
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GO2(i,j,k)= R_OP*GPO4(i,j,k) |
| 231 |
stephd |
1.1 |
else |
| 232 |
dfer |
1.16 |
GO2(i,j,k)= 0. _d 0 |
| 233 |
stephd |
1.1 |
endif |
| 234 |
stephd |
1.14 |
#endif |
| 235 |
stephd |
1.1 |
#ifdef ALLOW_FE |
| 236 |
dfer |
1.18 |
GFE(i,j,k) = R_FeP*GPO4(i,j,k) |
| 237 |
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& -Kscav*freefe(i,j,k) |
| 238 |
stephd |
1.1 |
#endif |
| 239 |
dfer |
1.16 |
ENDDO |
| 240 |
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ENDDO |
| 241 |
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ENDDO |
| 242 |
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| 243 |
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DO j=jmin,jmax |
| 244 |
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DO i=imin,imax |
| 245 |
stephd |
1.1 |
GALK(i,j,1)=GALK(i,j,1)+SURA(i,j) |
| 246 |
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GDIC(i,j,1)=GDIC(i,j,1)+SURC(i,j) |
| 247 |
stephd |
1.14 |
#ifdef ALLOW_O2 |
| 248 |
dfer |
1.16 |
GO2(i,j,1) =GO2(i,j,1)+SURO(i,j) |
| 249 |
stephd |
1.14 |
#endif |
| 250 |
stephd |
1.1 |
#ifdef ALLOW_FE |
| 251 |
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GFE(i,j,1)=GFE(i,j,1)+alpfe* |
| 252 |
stephd |
1.9 |
& InputFe(i,j,bi,bj)*recip_drF(1) |
| 253 |
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& *recip_hFacC(i,j,1,bi,bj) |
| 254 |
stephd |
1.1 |
#endif |
| 255 |
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ENDDO |
| 256 |
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ENDDO |
| 257 |
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| 258 |
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| 259 |
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C update |
| 260 |
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DO k=1,Nr |
| 261 |
stephd |
1.11 |
DO j=jmin,jmax |
| 262 |
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DO i=imin,imax |
| 263 |
stephd |
1.1 |
PTR_DIC(i,j,k)= |
| 264 |
jmc |
1.7 |
& PTR_DIC(i,j,k)+GDIC(i,j,k)*dTtracerLev(k) |
| 265 |
stephd |
1.1 |
PTR_ALK(i,j,k)= |
| 266 |
jmc |
1.7 |
& PTR_ALK(i,j,k)+GALK(i,j,k)*dTtracerLev(k) |
| 267 |
stephd |
1.1 |
PTR_PO4(i,j,k)= |
| 268 |
jmc |
1.7 |
& PTR_PO4(i,j,k)+GPO4(i,j,k)*dTtracerLev(k) |
| 269 |
stephd |
1.1 |
PTR_DOP(i,j,k)= |
| 270 |
jmc |
1.7 |
& PTR_DOP(i,j,k)+GDOP(i,j,k)*dTtracerLev(k) |
| 271 |
stephd |
1.14 |
#ifdef ALLOW_O2 |
| 272 |
stephd |
1.1 |
PTR_O2(i,j,k)= |
| 273 |
jmc |
1.7 |
& PTR_O2(i,j,k)+GO2(i,j,k)*dTtracerLev(k) |
| 274 |
stephd |
1.14 |
#endif |
| 275 |
stephd |
1.1 |
#ifdef ALLOW_FE |
| 276 |
|
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PTR_FE(i,j,k)= |
| 277 |
jmc |
1.7 |
& PTR_FE(i,j,k)+GFE(i,j,k)*dTtracerLev(k) |
| 278 |
stephd |
1.1 |
#endif |
| 279 |
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ENDDO |
| 280 |
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ENDDO |
| 281 |
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ENDDO |
| 282 |
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| 283 |
stephd |
1.10 |
#ifdef ALLOW_FE |
| 284 |
|
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#ifdef MINFE |
| 285 |
|
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c find free iron and get rid of insoluble part |
| 286 |
|
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call fe_chem(bi,bj,iMin,iMax,jMin,jMax, PTR_FE, freefe, |
| 287 |
|
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& myIter, mythid) |
| 288 |
|
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#endif |
| 289 |
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#endif |
| 290 |
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| 291 |
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| 292 |
stephd |
1.1 |
#ifdef ALLOW_TIMEAVE |
| 293 |
|
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c save averages |
| 294 |
dfer |
1.15 |
IF ( taveFreq.GT.0. ) THEN |
| 295 |
stephd |
1.1 |
DO k=1,Nr |
| 296 |
stephd |
1.11 |
DO j=jmin,jmax |
| 297 |
|
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DO i=imin,imax |
| 298 |
dfer |
1.15 |
BIOave(i,j,k,bi,bj) =BIOave(i,j,k,bi,bj)+ |
| 299 |
|
|
& BIOac(i,j,k)*deltaTclock |
| 300 |
|
|
CARave(i,j,k,bi,bj) =CARave(i,j,k,bi,bj)+ |
| 301 |
|
|
& CAR(i,j,k)*deltaTclock |
| 302 |
|
|
OmegaCave(i,j,k,bi,bj)=OmegaCave(i,j,k,bi,bj)+ |
| 303 |
|
|
& OmegaC(i,j,k,bi,bj)*deltaTclock |
| 304 |
|
|
pfluxave(i,j,k,bi,bj) =pfluxave(i,j,k,bi,bj) + |
| 305 |
|
|
& pflux(i,j,k)*deltaTclock |
| 306 |
|
|
epfluxave(i,j,k,bi,bj)=epfluxave(i,j,k,bi,bj) + |
| 307 |
|
|
& exportflux(i,j,k)*deltaTclock |
| 308 |
|
|
cfluxave(i,j,k,bi,bj) =cfluxave(i,j,k,bi,bj) + |
| 309 |
|
|
& cflux(i,j,k)*deltaTclock |
| 310 |
|
|
ENDDO |
| 311 |
|
|
ENDDO |
| 312 |
|
|
ENDDO |
| 313 |
|
|
DO j=jmin,jmax |
| 314 |
|
|
DO i=imin,imax |
| 315 |
|
|
SURave(i,j,bi,bj) =SURave(i,j,bi,bj)+ |
| 316 |
|
|
& SURC(i,j)*deltaTclock |
| 317 |
stephd |
1.14 |
#ifdef ALLOW_O2 |
| 318 |
dfer |
1.15 |
SUROave(i,j,bi,bj) =SUROave(i,j,bi,bj)+ |
| 319 |
|
|
& SURO(i,j)*deltaTclock |
| 320 |
stephd |
1.14 |
#endif |
| 321 |
dfer |
1.15 |
pCO2ave(i,j,bi,bj) =pCO2ave(i,j,bi,bj)+ |
| 322 |
|
|
& pCO2(i,j,bi,bj)*deltaTclock |
| 323 |
|
|
pHave(i,j,bi,bj) =pHave(i,j,bi,bj)+ |
| 324 |
|
|
& pH(i,j,bi,bj)*deltaTclock |
| 325 |
stephd |
1.2 |
fluxCO2ave(i,j,bi,bj)=fluxCO2ave(i,j,bi,bj)+ |
| 326 |
|
|
& fluxCO2(i,j,bi,bj)*deltaTclock |
| 327 |
stephd |
1.1 |
ENDDO |
| 328 |
|
|
ENDDO |
| 329 |
|
|
do k=1,Nr |
| 330 |
|
|
dic_timeave(bi,bj,k)=dic_timeave(bi,bj,k)+deltaTclock |
| 331 |
|
|
enddo |
| 332 |
dfer |
1.15 |
ENDIF |
| 333 |
|
|
#endif /* ALLOW_TIMEAVE*/ |
| 334 |
|
|
|
| 335 |
|
|
C---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----| |
| 336 |
|
|
|
| 337 |
|
|
#ifdef ALLOW_DIAGNOSTICS |
| 338 |
|
|
|
| 339 |
|
|
IF ( useDiagnostics ) THEN |
| 340 |
|
|
|
| 341 |
|
|
CALL DIAGNOSTICS_FILL(BIOac ,'DICBIOA ',0,Nr,2,bi,bj,myThid) |
| 342 |
|
|
CALL DIAGNOSTICS_FILL(CAR ,'DICCARB ',0,Nr,2,bi,bj,myThid) |
| 343 |
|
|
CALL DIAGNOSTICS_FILL(pCO2 ,'DICPCO2 ',0,1 ,1,bi,bj,myThid) |
| 344 |
|
|
CALL DIAGNOSTICS_FILL(fluxCO2,'DICCFLX ',0,1 ,1,bi,bj,myThid) |
| 345 |
|
|
CALL DIAGNOSTICS_FILL(pH ,'DICPHAV ',0,1 ,1,bi,bj,myThid) |
| 346 |
|
|
CALL DIAGNOSTICS_FILL(SURC ,'DICTFLX ',0,1 ,2,bi,bj,myThid) |
| 347 |
|
|
#ifdef ALLOW_O2 |
| 348 |
|
|
CALL DIAGNOSTICS_FILL(SURO ,'DICOFLX ',0,1 ,2,bi,bj,myThid) |
| 349 |
stephd |
1.1 |
#endif |
| 350 |
|
|
|
| 351 |
dfer |
1.15 |
ENDIF |
| 352 |
|
|
|
| 353 |
|
|
#endif /* ALLOW_DIAGNOSTICS */ |
| 354 |
|
|
|
| 355 |
|
|
#endif /* DIC_BIOTIC */ |
| 356 |
|
|
#endif /* ALLOW_PTRACERS */ |
| 357 |
stephd |
1.1 |
|
| 358 |
|
|
c |
| 359 |
|
|
RETURN |
| 360 |
|
|
END |
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