Parent Directory
| 
Revision Log
| 
Revision Graph
| Links to HEAD: | (view) (download) (annotate) |
| Sticky Tag: |
code from Hajoon: - light attenuation: add self-shading effect by climatological Chlorophyll (read from file)
Martin tries to clean up after himself: fix store directives for adjoint
make bio_export vectorize on SX8
avoid unused variables.
Fix init. of memory for taf store.
add argument "myThid" where missing
Moving dic options to DIC_OPTIONS.h
Merging DIC_ABIOTIC.h and DIC_BIOTIC.h
o don't allow negative biological activity (even if the nutrients have become negative). Need new GCHEM_OPTIONS.h macro: #define DIC_NO_NEG.
Cosmetic changes
o add new compile time option to go in GCHEM_OPTIONS.h: USE_QSW_UNDERICE and logical QSW_underice - so that if shortwave radiation/PAR already has ice fraction taken into account nothing more is done to it. Note that is USE_QSW is set AND seaice or thsice is used, then this will be automatic
o change Qsw: if using seaice or thsice, ice fraction is already taken into account o clean up seaice/thsice common blocks.
Add tons of "_d 0" (which changes the outputs)
o change check for Qsw too high, to be consistent with daily varying shortwave radiation (rather than 24hr averaged)
add missing cvs $Header:$ or $Name:$
bug: move the (1-fice) factor out of the k-loop
o clean up pkg/dic. o if using THSICE then use isemask for fice (still need to do this for other sea-ice packages)
o add (and change) flags so that pkg/dic can uses Qsw, Pload from FFIELDS. also ATMOSCO2 from the coupler (for times when coupled to an atmospheric model.
o add compile time flag (PAR_FROMSW) so that PAR needed in dic code is taken from Qsw (rather than insol algorithm or read from file). Also add some stop statements if silly combinations are attempted.
o changes to make dic code more adjoint friendly:
- standardize how tracers are passed from dic_biotic_forcing to
other subroutines
- add a tanh function to take the place of min(x,y) in bio_export.F
and fe_chem.F.
o dic code now does no calculations on the overlap regions
o add additional switches MINFE - to limit amount of free iron
READ_PAR - reads PAR from file, rather
than using insol.F
o include ice influence on air-sea fluxes, and more cleanup
o fix attentuation bug (bio-export), correct declarations (o2_surfforcing)
o clean up and add extra documentation
use drF instead of delZ
o first check-in for the "branch-genmake2" merge
o verification suite as run on shelley (gcc 3.2.2):
Wed Oct 8 23:42:29 EDT 2003
T S U V
G D M c m s m s m s m s
E p a R g m m e . m m e . m m e . m m e .
N n k u 2 i a a d i a a d i a a d i a a d
2 d e n d n x n . n x n . n x n . n x n .
OPTFILE=NONE
Y Y Y Y 13 16 16 16 0 16 16 16 16 16 16 16 16 13 12 0 0 pass adjustment.128x64x1
Y Y Y Y 16 16 16 16 0 16 16 16 16 16 16 0 0 16 16 0 0 pass adjustment.cs-32x32x1
Y Y Y Y 16 16 16 16 0 16 16 16 16 16 16 22 0 16 16 22 0 pass adjust_nlfs.cs-32x32x1
Y Y Y Y -- 13 13 16 16 13 13 13 13 16 16 16 16 16 16 16 16 N/O advect_cs
Y Y Y Y -- 22 16 16 16 16 16 16 13 16 16 16 16 16 16 16 16 N/O advect_xy
Y Y Y Y -- 13 16 13 16 16 16 16 16 16 16 22 16 16 16 16 16 N/O advect_xz
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass aim.5l_cs
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 16 16 16 16 13 16 pass aim.5l_Equatorial_Channel
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 13 16 16 13 13 16 pass aim.5l_LatLon
Y Y Y Y 13 16 16 16 16 16 16 16 16 16 13 12 13 13 16 13 16 pass exp0
Y Y Y Y 14 16 16 16 16 16 16 16 22 16 16 16 13 16 16 22 16 pass exp1
Y Y Y Y 13 13 16 13 16 16 16 16 16 13 13 16 16 13 13 13 13 pass exp2
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass exp4
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 22 16 16 16 22 16 pass exp5
Y Y Y Y 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 pass front_relax
Y Y Y Y 14 16 16 13 13 16 16 13 13 16 13 13 16 12 13 13 16 pass global_ocean.90x40x15
Y Y Y Y 10 16 16 13 13 16 13 16 16 13 13 13 13 16 16 13 16 FAIL global_ocean.cs32x15
Y Y Y Y 6 11 12 13 13 12 13 16 13 9 9 9 9 10 9 9 11 FAIL global_ocean_pressure
Y Y Y Y 14 16 16 13 16 16 16 13 13 13 13 13 16 12 16 13 16 pass global_with_exf
Y Y Y Y 14 16 16 16 16 16 16 16 16 11 13 22 13 16 16 9 16 pass hs94.128x64x5
Y Y Y Y 13 16 16 16 16 16 16 16 16 11 16 16 16 13 16 22 13 pass hs94.1x64x5
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 16 13 13 16 16 22 13 pass hs94.cs-32x32x5
Y Y Y Y 10 10 16 13 13 16 16 16 22 16 13 13 13 13 13 22 13 FAIL ideal_2D_oce
Y Y Y Y 8 16 16 16 16 16 16 16 16 13 13 8 16 16 16 16 16 FAIL internal_wave
Y Y Y Y 14 16 16 16 16 16 16 16 16 13 13 22 13 13 13 22 16 pass inverted_barometer
Y Y Y Y 12 16 16 16 16 16 16 16 16 16 13 12 13 13 13 13 13 FAIL lab_sea
Y Y Y Y 11 16 16 16 16 16 16 16 13 13 13 12 13 16 13 12 13 FAIL natl_box
Y Y Y Y 16 16 16 16 16 16 16 16 22 16 16 16 16 16 16 16 16 pass plume_on_slope
Y Y Y Y 13 16 16 16 16 13 16 16 16 16 16 16 16 13 16 16 16 pass solid-body.cs-32x32x1
changes to keep current with gchem pkg, and to be adjointable
Mis-type CONFIG as CONF !!!
initial checking in biogeochemistry packages
This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.
| ViewVC Help | |
| Powered by ViewVC 1.1.22 |