/[MITgcm]/MITgcm/pkg/dic/bio_export.F
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Contents of /MITgcm/pkg/dic/bio_export.F

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Revision 1.22 - (show annotations) (download)
Fri Apr 4 21:32:36 2008 UTC (16 years, 2 months ago) by dfer
Branch: MAIN
Changes since 1.21: +2 -3 lines
Merging DIC_ABIOTIC.h and DIC_BIOTIC.h

1 C $Header: /u/gcmpack/MITgcm/pkg/dic/bio_export.F,v 1.21 2007/12/06 22:24:34 stephd Exp $
2 C $Name: $
3
4 #include "DIC_OPTIONS.h"
5 #include "GCHEM_OPTIONS.h"
6
7 CBOP
8 C !ROUTINE: BIO_EXPORT
9
10 C !INTERFACE: ==========================================================
11 SUBROUTINE BIO_EXPORT( PTR_PO4 ,
12 #ifdef ALLOW_FE
13 I PTR_FE,
14 #endif
15 I bioac,
16 I bi,bj,imin,imax,jmin,jmax,
17 I myIter,myTime,myThid)
18
19 c !DESCRIPTION:
20 C Calculate biological activity and export
21
22 C !USES: ===============================================================
23 IMPLICIT NONE
24 #include "SIZE.h"
25 #include "DYNVARS.h"
26 #include "EEPARAMS.h"
27 #include "PARAMS.h"
28 #include "GRID.h"
29 #include "DIC_VARS.h"
30 #ifdef USE_QSW
31 #include "FFIELDS.h"
32 #endif
33
34 C !INPUT PARAMETERS: ===================================================
35 C myThid :: thread number
36 C myIter :: current timestep
37 C myTime :: current time
38 C PTR_PO4 :: phosphate tracer field
39 C PTR_FE :: iron tracer field
40 INTEGER myIter
41 _RL myTime
42 INTEGER myThid
43 _RL PTR_PO4(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)
44 #ifdef ALLOW_FE
45 _RL PTR_FE(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)
46 #endif
47 INTEGER imin, imax, jmin, jmax, bi, bj
48
49
50 C !OUTPUT PARAMETERS: ==================================================
51 C bioac :: biological productivity (will be split
52 C between export and dissolved pool)
53 _RL bioac(1-OLx:sNx+OLx,1-OLy:sNy+OLy,nR)
54
55 #ifdef ALLOW_PTRACERS
56 #ifdef DIC_BIOTIC
57
58 C !LOCAL VARIABLES: ====================================================
59 C i,j,k :: loop indices
60 INTEGER I,J,k
61 _RL sfac(1-OLy:sNy+OLy)
62 _RL lit, atten
63 _RL nutlimit
64 _RL tmpfe, tmppo4
65 #ifdef AD_SAFE
66 _RL thx, thy, theps
67 #endif
68 CEOP
69
70
71 #ifndef READ_PAR
72 #ifndef USE_QSW
73 call insol(myTime,sfac,bj)
74 #endif
75 #endif
76 DO j=jmin,jmax
77 DO i=imin,imax
78 C Fortran-90
79 CRG C$TAF INIT bio_export = static, nlev
80 C FORTRAN-77 dynamic memory uses adstore adresto
81 CRG C$TAF INIT bio_export = memory
82 C FORTRAN-77 with know max of nlev
83 C$TAF INIT bio_export = static, 10
84 #ifdef READ_PAR
85 lit=PAR(i,j,bi,bj)
86 #elif (defined USE_QSW)
87 lit=-parfrac*Qsw(i,j,bi,bj)*maskC(i,j,1,bi,bj)
88 #else
89 lit=sfac(j)
90 #endif
91
92 IF ( .NOT. QSW_underice ) THEN
93 c if using Qsw but not seaice/thsice or coupled, then
94 c ice fraction needs to be taken into account
95 lit=lit*(1. _d 0 - FIce(i,j,bi,bj))
96 ENDIF
97 c
98 DO k=1,nlev
99 C$TAF STORE lit = bio_export
100 atten=(k0*drF(k)*hFacC(i,j,k,bi,bj)*.5 _d 0)
101 if (k.gt.1) atten=atten+(k0*drF(k-1)
102 & *hFacC(i,j,k-1,bi,bj)*.5 _d 0)
103 lit=lit*exp(-atten)
104 IF (lit.LT.0. _d 0.OR.lit.GT.350. _d 0) THEN
105 print*,'QQ lit', lit
106 ENDIF
107
108 #ifdef DIC_NO_NEG
109 tmppo4=max(0. _d 0, PTR_PO4(i,j,k))
110 lit=max(0. _d 0,lit)
111 #else
112 tmppo4=PTR_PO4(i,j,k)
113 #endif
114
115 #ifdef ALLOW_FE
116 #ifdef DIC_NO_NEG
117 tmpfe=max(0. _d 0,PTR_FE(i,j,k))
118 #else
119 tmpfe=PTR_FE(i,j,k)
120 #endif
121 #ifdef AD_SAFE
122 thx = tmppo4/(tmppo4+KPO4)
123 thy = tmpfe/(tmpfe+KFE)
124 c thx = PTR_PO4(i,j,k)/(PTR_PO4(i,j,k)+KPO4)
125 c thy = PTR_FE(i,j,k)/(PTR_FE(i,j,k)+KFE)
126 theps = 1. _d -6
127 nutlimit= ( 1. _d 0 - tanh((thx-thy)/theps) ) * thx/2. _d 0
128 & +( 1. _d 0 + tanh((thx-thy)/theps) ) * thy/2. _d 0
129 #else
130 nutlimit= min(tmppo4/(tmppo4+KPO4),
131 & tmpfe/(tmpfe+KFE) )
132 #endif
133 #else
134 nutlimit= tmppo4/(tmppo4+KPO4)
135 #endif
136
137 bioac(i,j,k)=alpha(i,j,bi,bj)*
138 & lit/(lit+lit0)*maskC(i,j,k,bi,bj)*
139 & nutlimit
140 ENDDO
141 ENDDO
142 ENDDO
143 c
144 #endif
145 #endif
146 RETURN
147 END

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