1 |
mlosch |
1.11 |
C $Header: /u/gcmpack/MITgcm/pkg/bling/bling_readparms.F,v 1.10 2017/03/16 17:03:26 mmazloff Exp $ |
2 |
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C $Name: BASE $ |
3 |
mmazloff |
1.1 |
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4 |
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#include "BLING_OPTIONS.h" |
5 |
jmc |
1.9 |
#ifdef ALLOW_EXF |
6 |
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# include "EXF_OPTIONS.h" |
7 |
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#endif |
8 |
mmazloff |
1.1 |
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9 |
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CBOP |
10 |
jmc |
1.7 |
SUBROUTINE BLING_READPARMS( myThid ) |
11 |
mmazloff |
1.1 |
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12 |
jmc |
1.7 |
C *========================================================* |
13 |
mmazloff |
1.1 |
C | subroutine bling_readparms |
14 |
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C | o Initialise and read parameters for BLING model |
15 |
jmc |
1.7 |
C *========================================================* |
16 |
mmazloff |
1.1 |
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17 |
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implicit none |
18 |
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19 |
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C === Global variables === |
20 |
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#include "SIZE.h" |
21 |
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#include "EEPARAMS.h" |
22 |
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#include "PARAMS.h" |
23 |
mmazloff |
1.3 |
#ifdef USE_EXFCO2 |
24 |
jmc |
1.9 |
# ifdef USE_EXF_INTERPOLATION |
25 |
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# ifdef ALLOW_EXCH2 |
26 |
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# include "W2_EXCH2_SIZE.h" |
27 |
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# include "W2_EXCH2_TOPOLOGY.h" |
28 |
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# endif /* ALLOW_EXCH2 */ |
29 |
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# include "SET_GRID.h" |
30 |
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# endif /* USE_EXF_INTERPOLATION */ |
31 |
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# include "EXF_PARAM.h" |
32 |
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# include "EXF_CONSTANTS.h" |
33 |
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#endif /* USE_EXFCO2 */ |
34 |
mmazloff |
1.1 |
#include "BLING_VARS.h" |
35 |
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36 |
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C === Routine arguments === |
37 |
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C myThid :: My Thread Id. number |
38 |
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INTEGER myThid |
39 |
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CEOP |
40 |
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41 |
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#ifdef ALLOW_BLING |
42 |
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43 |
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C === Local variables === |
44 |
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C msgBuf :: Informational/error message buffer |
45 |
jmc |
1.8 |
C errCount :: error counter |
46 |
mmazloff |
1.1 |
C iUnit :: Work variable for IO unit number |
47 |
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CHARACTER*(MAX_LEN_MBUF) msgBuf |
48 |
jmc |
1.8 |
INTEGER errCount |
49 |
mmazloff |
1.1 |
INTEGER iUnit |
50 |
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51 |
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C ========================================================== |
52 |
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C Abiotic parameters |
53 |
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C ========================================================== |
54 |
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55 |
jmc |
1.7 |
NAMELIST /ABIOTIC_PARMS/ |
56 |
mmazloff |
1.1 |
& permil, Pa2Atm |
57 |
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58 |
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C ========================================================== |
59 |
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C BLING parameters |
60 |
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C ========================================================== |
61 |
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62 |
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NAMELIST /BIOTIC_PARMS/ |
63 |
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& pivotal, |
64 |
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& Pc_0, |
65 |
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& Pc_0_diaz, |
66 |
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& lambda_0, |
67 |
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& chl_min, |
68 |
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& CtoN, |
69 |
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& NO3toN, |
70 |
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& HtoC, |
71 |
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& O2toN, |
72 |
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& CatoN, |
73 |
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& masstoN, |
74 |
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& alpha_photo, |
75 |
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& theta_Fe_max_hi, |
76 |
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& theta_Fe_max_lo, |
77 |
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& gamma_irr_mem, |
78 |
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& gamma_DON, |
79 |
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& gamma_DOP, |
80 |
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& gamma_POM, |
81 |
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& k_Fe, |
82 |
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& k_Fe_diaz, |
83 |
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& k_O2, |
84 |
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& k_NO3, |
85 |
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& k_PO4, |
86 |
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& k_PtoN, |
87 |
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& k_FetoN, |
88 |
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& kFe_eq_lig_max, |
89 |
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& kFe_eq_lig_min, |
90 |
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& kFe_eq_lig_Femin, |
91 |
jmc |
1.7 |
& kFe_eq_lig_irr, |
92 |
mmazloff |
1.1 |
& kFe_org, |
93 |
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& kFe_inorg, |
94 |
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& PtoN_min, |
95 |
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& PtoN_max, |
96 |
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& FetoN_min, |
97 |
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& FetoN_max, |
98 |
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& FetoC_sed, |
99 |
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& remin_min, |
100 |
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& oxic_min, |
101 |
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& ligand, |
102 |
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& kappa_eppley, |
103 |
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& kappa_eppley_diaz, |
104 |
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& kappa_remin, |
105 |
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& ca_remin_depth, |
106 |
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& phi_DOM, |
107 |
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& phi_sm, |
108 |
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& phi_lg, |
109 |
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& phi_dvm, |
110 |
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& sigma_dvm, |
111 |
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& wsink0z, |
112 |
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& wsink0, |
113 |
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& wsinkacc, |
114 |
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& parfrac, |
115 |
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& alpfe, |
116 |
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& k0, |
117 |
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& epsln |
118 |
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119 |
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C ========================================================== |
120 |
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C BLING forcing |
121 |
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C ========================================================== |
122 |
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123 |
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NAMELIST /BLING_FORCING/ |
124 |
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& bling_windFile, bling_atmospFile, bling_iceFile, |
125 |
mmazloff |
1.4 |
& bling_ironFile, bling_silicaFile, |
126 |
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& bling_psmFile, bling_plgFile, bling_PdiazFile, |
127 |
mmazloff |
1.1 |
& bling_forcingPeriod, bling_forcingCycle, |
128 |
mmazloff |
1.5 |
& bling_pCO2, river_conc_trac, |
129 |
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& bling_Pc_2dFile, bling_Pc_2d_diazFile, |
130 |
mmazloff |
1.6 |
& bling_alpha_photo2dFile,bling_phi_DOM2dFile, |
131 |
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& bling_k_Fe2dFile, bling_k_Fe_diaz2dFile, |
132 |
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& bling_gamma_POM2dFile, bling_wsink0_2dFile, |
133 |
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& bling_phi_sm2dFile,bling_phi_lg2dFile |
134 |
mmazloff |
1.2 |
#ifdef USE_EXFCO2 |
135 |
jmc |
1.9 |
& , apco2file, apco2startdate1, apco2startdate2, |
136 |
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& apco2RepCycle, apco2period, apco2StartTime, |
137 |
jmc |
1.8 |
& exf_inscal_apco2, exf_outscal_apco2, apco2const, |
138 |
mmazloff |
1.2 |
& apco2_exfremo_intercept, apco2_exfremo_slope |
139 |
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#ifdef USE_EXF_INTERPOLATION |
140 |
jmc |
1.8 |
& , apco2_lon0, apco2_lon_inc, apco2_lat0, apco2_lat_inc, |
141 |
mmazloff |
1.2 |
& apco2_nlon, apco2_nlat, apco2_interpMethod |
142 |
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#endif /* USE_EXF_INTERPOLATION */ |
143 |
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#endif |
144 |
mmazloff |
1.1 |
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145 |
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C ========================================================== |
146 |
mmazloff |
1.10 |
C secperday :: seconds in a day = 24*60*60 |
147 |
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C permil :: set carbon mol/m3 <---> mol/kg conversion factor |
148 |
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C default permil = 1024.5 kg/m3 |
149 |
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C Pa2Atm :: Conversion factor for atmospheric pressure pLoad |
150 |
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C (when coupled to atmospheric model) into Atm. |
151 |
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C Default assumes pLoad in Pascal |
152 |
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C 1 Atm = 1.01325e5 Pa = 1013.25 mb |
153 |
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C pivotal :: Pivotal phytoplankton biomass |
154 |
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C Pc_0 :: Maximum phytoplankton carbon-specific growth rate at 0C |
155 |
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C Pc_0_diaz :: Maximum diazotroph carbon-specific growth rate at 0C |
156 |
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C lambda_0 :: Carbon-specific phytoplankton mortality rate |
157 |
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C chl_min :: minimum chlorophyll concentration [ug kg-1] |
158 |
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C CtoN :: Carbon to nitrogen ratio in organic matter |
159 |
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C NO3toN :: |
160 |
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C HtoC :: |
161 |
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C O2toN :: Oxygen to nitrogen for biological activity |
162 |
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C CatoN :: Calcium to nitrogen uptake by small phyto |
163 |
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C masstoN :: |
164 |
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C alpha_photo :: [g C g Chl-1 m2 W-1 s-1] |
165 |
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C theta_Fe_max_hi :: Maximum Chl:c ratio, abundant iron |
166 |
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C theta_Fe_max_lo :: Maximum Chl:c ratio, extreme iron limitation |
167 |
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C gamma_irr_mem :: Photoadaptation time scale |
168 |
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C gamma_DON :: Decay timescale of DON |
169 |
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C gamma_DOP :: Decay timescale of DOP |
170 |
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C gamma_POM :: |
171 |
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C k_Fe :: Dissolved Fe uptake half-saturation constant |
172 |
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C k_Fe_diaz :: Dissolved Fe uptake half-saturation constant for diazotrophs |
173 |
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C k_O2 :: Half-saturation constant for aerobic respiration |
174 |
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C k_NO3 :: Nitrate uptake half-saturation constant |
175 |
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C k_PO4 :: Phosphate uptake half-saturation constant |
176 |
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C k_PtoN :: Half-saturation cellular P:N |
177 |
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C k_FetoN :: Half-saturation cellular Fe:N |
178 |
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C kFe_eq_lig_max :: Maximum Fe-ligand stability constant |
179 |
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C kFe_eq_lig_min :: Minimum Fe-ligand stability constant |
180 |
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C kFe_eq_lig_Femin :: Constant having to do with photodissociation |
181 |
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C kFe_eq_lig_irr :: Iron ligand stability constant |
182 |
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C kFe_org :: Organic-matter dependent scavenging rate |
183 |
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C kFe_inorg :: Inorganic scavenging rate |
184 |
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C PtoN_min :: Minimum P:N uptake ratio |
185 |
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C PtoN_max :: Maximum P:N uptake ratio |
186 |
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C FetoN_min :: Minimum Fe:N uptake ratio |
187 |
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C FetoN_max :: Maximum Fe:N uptake ratio |
188 |
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C FetoC_sed :: Fe:P in sediments |
189 |
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C remin_min :: Minimum anaerobic respiration rate |
190 |
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C oxic_min :: Minimum O2 concentration for aerobic respiration |
191 |
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C ligand :: Ligand concentration |
192 |
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C kappa_eppley :: Temperature dependence of growth |
193 |
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C kappa_eppley_diaz:: Temperature dependence of growth for diazotrophs |
194 |
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C kappa_remin :: Temperature dependence of remineralization |
195 |
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C ca_remin_depth :: CaCO3 remineralization lengthscale |
196 |
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C phi_DOM :: Fraction of non-sinking production to DOM |
197 |
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C phi_sm :: Fraction of small phytoplankton biomass converted to detritus |
198 |
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C phi_lg :: Fraction of large phytoplankton biomass converted to detritus |
199 |
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C phi_dvm :: |
200 |
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C sigma_dvm :: |
201 |
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C wsink0z :: Depth at which sinking rate starts increasing |
202 |
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C wsink0 :: Initial sinking rate |
203 |
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C wsinkacc :: Acceleration rate of sinking with depth |
204 |
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C parfrac :: fraction of Qsw avail for photosynthesis |
205 |
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C alpfe :: solubility of aeolian iron |
206 |
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C k0 :: Light attentuation coefficient |
207 |
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C epsln :: a very small number |
208 |
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209 |
mmazloff |
1.1 |
_RL secperday |
210 |
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integer k |
211 |
mmazloff |
1.2 |
#ifdef USE_EXF_INTERPOLATION |
212 |
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INTEGER gridNx, gridNy |
213 |
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INTEGER j |
214 |
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_RL inp_lon0, inp_lat0, inp_dLon, inp_dLat |
215 |
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#endif |
216 |
mmazloff |
1.1 |
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217 |
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_BEGIN_MASTER(myThid) |
218 |
jmc |
1.8 |
errCount = 0 |
219 |
mmazloff |
1.1 |
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220 |
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C ========================================================== |
221 |
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C Default values |
222 |
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223 |
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secperday = 86400. _d 0 |
224 |
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permil = 1. _d 0 / 1024.5 _d 0 |
225 |
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Pa2Atm = 1.01325 _d 5 |
226 |
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CtoN = 6.75 _d 0 |
227 |
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HtoC = 48. _d 0 / 106. _d 0 |
228 |
jmc |
1.7 |
O2toN = CtoN * (1. _d 0 + 0.25 _d 0 * HtoC) |
229 |
mmazloff |
1.1 |
& + 2. _d 0 |
230 |
jmc |
1.7 |
NO3toN = CtoN * (1. _d 0 + 0.25 _d 0 * HtoC) |
231 |
mmazloff |
1.1 |
& * 0.8 _d 0 + 0.6 _d 0 |
232 |
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CatoN = CtoN * 0.015 _d 0 |
233 |
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masstoN = CtoN * 12.001 _d 0 |
234 |
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pivotal = 1.9 _d -3 / 1028. _d 0 / CtoN / permil |
235 |
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Pc_0 = 1.7 _d -5 |
236 |
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Pc_0_diaz = 0.01 _d -5 |
237 |
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lambda_0 = 0.19 _d 0 / secperday |
238 |
jmc |
1.7 |
chl_min = 1. _d -5 |
239 |
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alpha_photo = 0.7 _d -5 * 2.77 _d 18 / 6.022 _d 17 |
240 |
mmazloff |
1.1 |
theta_Fe_max_hi = 0.04 _d 0 |
241 |
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theta_Fe_max_lo = 0.01 _d 0 |
242 |
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gamma_irr_mem = 1. _d 0 / secperday |
243 |
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gamma_DON = 0.25 _d 0 / (365.25 _d 0 * secperday) |
244 |
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gamma_DOP = 0.5 _d 0 / (365.25 _d 0 * secperday) |
245 |
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gamma_POM = 0.12 _d 0 / secperday |
246 |
mmazloff |
1.10 |
k_Fe = 1.6 _d -10 / permil |
247 |
mmazloff |
1.1 |
k_Fe_diaz = 7. _d -10 / permil |
248 |
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k_O2 = 20. _d -6 / permil |
249 |
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k_NO3 = 2. _d -6 / permil |
250 |
mmazloff |
1.10 |
k_PO4 = 1. _d -8 / permil |
251 |
jmc |
1.7 |
k_PtoN = 1.5 _d -6 / permil |
252 |
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k_FetoN = 8. _d -10 / permil |
253 |
mmazloff |
1.1 |
PtoN_min = 1. / 28. |
254 |
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PtoN_max = 1. / 9. |
255 |
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FetoN_min = 2. _d -6 * 6.75 |
256 |
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FetoN_max = 25. _d -6 * 6.75 |
257 |
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FetoC_sed = 1. _d -4 |
258 |
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kFe_eq_lig_max = 8.0 _d 10 * permil |
259 |
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kFe_eq_lig_min = 8.0 _d 9 * permil |
260 |
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kFe_eq_lig_Femin = 0.05 _d -9 / permil |
261 |
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kFe_eq_lig_irr = 0.1 _d 0 |
262 |
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kFe_org = 0.5 _d 0 / secperday * permil**(0.58) |
263 |
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kFe_inorg = 1. _d 3 / secperday * permil**(0.5) |
264 |
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remin_min = 0.15 _d 0 |
265 |
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oxic_min = 1. _d -6 / permil |
266 |
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Ligand = 1. _d -9 / permil |
267 |
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kappa_eppley = 0.063 _d 0 |
268 |
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kappa_eppley_diaz = 0.18 _d 0 |
269 |
jmc |
1.7 |
kappa_remin = -0.032 _d 0 |
270 |
mmazloff |
1.1 |
ca_remin_depth = 1343. _d 0 |
271 |
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phi_DOM = 0.1 _d 0 |
272 |
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phi_sm = 0.18 _d 0 |
273 |
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phi_lg = 1. _d 0 |
274 |
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phi_dvm = 0.2 _d 0 |
275 |
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sigma_dvm = 40.0 _d 0 |
276 |
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wsink0z = 80. _d 0 |
277 |
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wsink0 = 16. _d 0 / secperday |
278 |
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wsinkacc = 0.05 _d 0 / secperday |
279 |
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parfrac = 0.4 _d 0 |
280 |
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alpfe = 0.01 _d 0 |
281 |
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k0 = 0.04 _d 0 |
282 |
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epsln = 1. _d -30 |
283 |
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284 |
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bling_windFile = ' ' |
285 |
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bling_atmospFile= ' ' |
286 |
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bling_iceFile = ' ' |
287 |
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bling_ironFile = ' ' |
288 |
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bling_silicaFile= ' ' |
289 |
mmazloff |
1.5 |
bling_psmFile = ' ' |
290 |
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bling_plgFile = ' ' |
291 |
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bling_pdiazFile = ' ' |
292 |
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bling_pCO2 = 278. _d -6 |
293 |
mmazloff |
1.1 |
DO k=1,8 |
294 |
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river_conc_trac(k) = 0. _d 0 |
295 |
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ENDDO |
296 |
mmazloff |
1.5 |
bling_Pc_2dFile = ' ' |
297 |
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bling_Pc_2d_diazFile = ' ' |
298 |
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bling_alpha_photo2dFile= ' ' |
299 |
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bling_k_Fe2dFile = ' ' |
300 |
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bling_k_Fe_diaz2dFile = ' ' |
301 |
mmazloff |
1.6 |
bling_gamma_POM2dFile = ' ' |
302 |
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bling_wsink0_2dFile = ' ' |
303 |
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bling_phi_DOM2dFile = ' ' |
304 |
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bling_phi_sm2dFile = ' ' |
305 |
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bling_phi_lg2dFile = ' ' |
306 |
mmazloff |
1.1 |
|
307 |
mmazloff |
1.2 |
#ifdef USE_EXFCO2 |
308 |
|
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apco2startdate1 = 0 |
309 |
|
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apco2startdate2 = 0 |
310 |
jmc |
1.8 |
apco2StartTime = UNSET_RL |
311 |
mmazloff |
1.2 |
apco2period = 0.0 _d 0 |
312 |
jmc |
1.9 |
apco2RepCycle = repeatPeriod |
313 |
mmazloff |
1.2 |
apco2const = 0.0 _d 0 |
314 |
|
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apco2_exfremo_intercept = 0.0 _d 0 |
315 |
|
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apco2_exfremo_slope = 0.0 _d 0 |
316 |
jmc |
1.8 |
apco2file = ' ' |
317 |
|
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exf_inscal_apco2 = 1. _d 0 |
318 |
|
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exf_outscal_apco2 = 1. _d 0 |
319 |
mmazloff |
1.2 |
#ifdef USE_EXF_INTERPOLATION |
320 |
jmc |
1.8 |
C-- set default input location to match (in case of simple Lat-Long grid) |
321 |
mmazloff |
1.2 |
C model grid cell-center position (leading to trivial interpolation) |
322 |
|
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inp_lon0 = xgOrigin + delX(1)*exf_half |
323 |
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inp_lat0 = ygOrigin + delY(1)*exf_half |
324 |
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inp_dLon = delX(1) |
325 |
|
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inp_dLat = delY(1) |
326 |
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apco2_lon0 = inp_lon0 |
327 |
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apco2_lat0 = inp_lat0 |
328 |
|
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apco2_nlon = gridNx |
329 |
|
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apco2_nlat = gridNy |
330 |
|
|
apco2_lon_inc = inp_dLon |
331 |
|
|
DO j=1,MAX_LAT_INC |
332 |
|
|
IF (j.LT.gridNy) THEN |
333 |
|
|
inp_dLat = (delY(j) + delY(j+1))*exf_half |
334 |
|
|
ELSE |
335 |
|
|
inp_dLat = 0. |
336 |
|
|
ENDIF |
337 |
|
|
apco2_lat_inc(j) = inp_dLat |
338 |
|
|
ENDDO |
339 |
|
|
#endif /* USE_EXF_INTERPOLATION */ |
340 |
|
|
#endif |
341 |
mmazloff |
1.1 |
|
342 |
jmc |
1.7 |
C default periodic forcing to same as for physics |
343 |
mmazloff |
1.1 |
bling_forcingPeriod = externForcingPeriod |
344 |
|
|
bling_forcingCycle = externForcingCycle |
345 |
|
|
|
346 |
|
|
WRITE(msgBuf,'(A)') ' BLING_READPARMS: opening data.bling' |
347 |
|
|
CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
348 |
|
|
I SQUEEZE_RIGHT, myThid ) |
349 |
|
|
|
350 |
|
|
CALL OPEN_COPY_DATA_FILE( 'data.bling', 'BLING_READPARMS', |
351 |
|
|
O iUnit, myThid ) |
352 |
|
|
|
353 |
|
|
C-- Read parameters from open data file: |
354 |
|
|
|
355 |
|
|
C- Abiotic parameters |
356 |
|
|
READ(UNIT=iUnit,NML=ABIOTIC_PARMS) |
357 |
|
|
|
358 |
|
|
C- BLING parameters |
359 |
|
|
READ(UNIT=iUnit,NML=BIOTIC_PARMS) |
360 |
|
|
|
361 |
|
|
C- forcing filenames and parameters |
362 |
|
|
READ(UNIT=iUnit,NML=BLING_FORCING) |
363 |
|
|
|
364 |
|
|
WRITE(msgBuf,'(A)') |
365 |
|
|
& ' BLING_READPARMS: finished reading data.BLING' |
366 |
|
|
CALL PRINT_MESSAGE( msgBuf, standardMessageUnit, |
367 |
|
|
I SQUEEZE_RIGHT, myThid ) |
368 |
|
|
|
369 |
|
|
C-- Close the open data file |
370 |
mlosch |
1.11 |
#ifdef SINGLE_DISK_IO |
371 |
mmazloff |
1.1 |
CLOSE(iUnit) |
372 |
mlosch |
1.11 |
#else |
373 |
|
|
CLOSE(iUnit,STATUS='DELETE') |
374 |
|
|
#endif /* SINGLE_DISK_IO */ |
375 |
mmazloff |
1.1 |
|
376 |
|
|
C- derive other parameters: |
377 |
|
|
|
378 |
|
|
QSW_underice = .FALSE. |
379 |
|
|
#ifdef USE_QSW_UNDERICE |
380 |
|
|
QSW_underice = .TRUE. |
381 |
|
|
#elif (defined (USE_QSW)) |
382 |
|
|
C if using Qsw and seaice, then ice fraction is already |
383 |
|
|
C taken into account |
384 |
|
|
IF ( useSEAICE ) QSW_underice = .TRUE. |
385 |
|
|
IF ( useThSIce ) QSW_underice = .TRUE. |
386 |
|
|
#endif |
387 |
|
|
|
388 |
jmc |
1.8 |
IF ( errCount.GE.1 ) THEN |
389 |
|
|
WRITE(msgBuf,'(A,I3,A)') |
390 |
|
|
& 'BLING_READPARMS: detected', errCount,' fatal error(s)' |
391 |
|
|
CALL PRINT_ERROR( msgBuf, myThid ) |
392 |
|
|
CALL ALL_PROC_DIE( 0 ) |
393 |
|
|
STOP 'ABNORMAL END: S/R BLING_READPARMS' |
394 |
|
|
ENDIF |
395 |
|
|
|
396 |
mmazloff |
1.1 |
_END_MASTER(myThid) |
397 |
|
|
|
398 |
|
|
C-- Everyone else must wait for the parameters to be loaded |
399 |
|
|
_BARRIER |
400 |
|
|
|
401 |
|
|
#endif /* ALLOW_BLING */ |
402 |
|
|
|
403 |
|
|
RETURN |
404 |
|
|
END |