| 7 |
C !AUTHORS: mitgcm developers ( support@mitgcm.org ) |
C !AUTHORS: mitgcm developers ( support@mitgcm.org ) |
| 8 |
C !AFFILIATION: Massachussetts Institute of Technology |
C !AFFILIATION: Massachussetts Institute of Technology |
| 9 |
C !DATE: |
C !DATE: |
| 10 |
C !INTRODUCTION: model/ subdirectory |
C !INTRODUCTION: Kernel dynamical routines |
| 11 |
C Routines in the subdirectories under model/ ( src/ and inc/ ) are most of |
C This document summarises MITgcm code under the model/ subdirectory. |
| 12 |
C the core routines for the baseline forms of the kernel equations in the |
C The code under model/ ( src/ and inc/ ) contains most of |
| 13 |
C MITgcm algorithm. |
C the driver routines for the baseline forms of the kernel equations in the |
| 14 |
C Code for auxilliary equations and alternate dicretizations of the fundamental |
C MITgcm algorithm. Numerical code for much of the baseline forms of |
| 15 |
C equations can be found in the pkg/ directory tree. |
C these equations is also under the model/ directory. Other numerical code |
| 16 |
|
C used for the kernel equations is contained in packages in the pkg/ |
| 17 |
|
C directory tree. |
| 18 |
|
C Code for auxilliary equations and alternate dicretizations of the kernel |
| 19 |
|
C equations and algorithm can also be found in the pkg/ directory tree. |
| 20 |
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C |
| 21 |
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C \subsection{Getting Help and Reporting Errors and Problems} |
| 22 |
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C If you have questions please e-mail support@mitgcm.org. We also welcome |
| 23 |
|
C reports of errors and inconsistencies in the code or in the accompanying |
| 24 |
|
C documentation. Please feel free to send these |
| 25 |
|
C to support@mitgcm.org. For further information and to review |
| 26 |
|
C problems reported to support@mitgcm.org please visit http://mitgcm.org. |
| 27 |
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C |
| 28 |
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C \subsection{MITgcm Kernel Code Calling Sequence} |
| 29 |
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C \bv |
| 30 |
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C |
| 31 |
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C Invocation from WRAPPER level... |
| 32 |
|
C : |
| 33 |
|
C : |
| 34 |
|
C | |
| 35 |
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C |-THE_MODEL_MAIN :: Primary driver for the MITgcm algorithm |
| 36 |
|
C | :: Called from WRAPPER level numerical |
| 37 |
|
C | :: code innvocation routine. On entry |
| 38 |
|
C | :: to THE_MODEL_MAIN separate thread and |
| 39 |
|
C | :: separate processes will have been established. |
| 40 |
|
C | :: Each thread and process will have a unique ID |
| 41 |
|
C | :: but as yet it will not be associated with a |
| 42 |
|
C | :: specific region in decomposed discrete space. |
| 43 |
|
C | |
| 44 |
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C |-INITIALISE_FIXED :: Set fixed model arrays such as topography, |
| 45 |
|
C | | :: grid, solver matrices etc.. |
| 46 |
|
C | | |
| 47 |
|
C | |-INI_PARMS :: Routine to set kernel model parameters. |
| 48 |
|
C | | :: By default kernel parameters are read from file |
| 49 |
|
C | | :: "data" in directory in which code executes. |
| 50 |
|
C | | |
| 51 |
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C | |-MON_INIT :: Initialises monitor pacakge ( see pkg/monitor ) |
| 52 |
|
C | | |
| 53 |
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C | |-INI_GRID :: Control grid array (vert. and hori.) initialisation. |
| 54 |
|
C | | | :: Grid arrays are held and described in GRID.h. |
| 55 |
|
C | | | |
| 56 |
|
C | | |-INI_VERTICAL_GRID :: Initialise vertical grid arrays. |
| 57 |
|
C | | | |
| 58 |
|
C | | |-INI_CARTESIAN_GRID :: Cartesian horiz. grid initialisation |
| 59 |
|
C | | | :: (calculate grid from kernel parameters). |
| 60 |
|
C | | | |
| 61 |
|
C | | |-INI_SPHERICAL_POLAR_GRID :: Spherical polar horiz. grid |
| 62 |
|
C | | | :: initialisation (calculate grid from |
| 63 |
|
C | | | :: kernel parameters). |
| 64 |
|
C | | | |
| 65 |
|
C | | |-INI_CURVILINEAR_GRID :: General orthogonal, structured horiz. |
| 66 |
|
C | | :: grid initialisations. ( input from raw |
| 67 |
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C | | :: grid files, LONC.bin, DXF.bin etc... ) |
| 68 |
|
C | | |
| 69 |
|
C | |-INI_DEPTHS :: Read (from "bathyFile") or set bathymetry/orgography. |
| 70 |
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C | | |
| 71 |
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C | |-INI_MASKS_ETC :: Derive horizontal and vertical cell fractions and |
| 72 |
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C | | :: land masking for solid-fluid boundaries. |
| 73 |
|
C | | |
| 74 |
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C | |-INI_LINEAR_PHSURF :: Set ref. surface Bo_surf |
| 75 |
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C | | |
| 76 |
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C | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane, |
| 77 |
|
C | | :: sphere optins are coded. |
| 78 |
|
C | | |
| 79 |
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C | |-PACAKGES_BOOT :: Start up the optional package environment. |
| 80 |
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C | | :: Runtime selection of active packages. |
| 81 |
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C | | |
| 82 |
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C | |-PACKAGES_READPARMS :: Call active package internal parameter load. |
| 83 |
|
C | | | |
| 84 |
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C | | |-GMREDI_READPARMS :: GM Package. see pkg/gmredi |
| 85 |
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C | | |-KPP_READPARMS :: KPP Package. see pkg/kpp |
| 86 |
|
C | | |-SHAP_FILT_READPARMS :: Shapiro filter package. see pkg/shap_filt |
| 87 |
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C | | |-OBCS_READPARMS :: Open bndy package. see pkg/obcs |
| 88 |
|
C | | |-AIM_READPARMS :: Intermediate Atmos. pacakage. see pkg/aim |
| 89 |
|
C | | |-COST_READPARMS :: Cost function package. see pkg/cost |
| 90 |
|
C | | |-CTRL_INIT :: Control vector support package. see pkg/ctrl |
| 91 |
|
C | | |-OPTIM_READPARMS :: Optimisation support package. see pkg/ctrl |
| 92 |
|
C | | |-GRDCHK_READPARMS :: Gradient check package. see pkg/grdchk |
| 93 |
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C | | |-ECCO_READPARMS :: ECCO Support Package. see pkg/ecco |
| 94 |
|
C | | |-PTRACERS_READPARMS :: multiple tracer package, see pkg/ptracers |
| 95 |
|
C | | |-GCHEM_READPARMS :: tracer interface package, see pkg/gchem |
| 96 |
|
C | | |
| 97 |
|
C | |-PACKAGES_CHECK |
| 98 |
|
C | | | |
| 99 |
|
C | | |-KPP_CHECK :: KPP Package. pkg/kpp |
| 100 |
|
C | | |-OBCS_CHECK :: Open bndy Pacakge. pkg/obcs |
| 101 |
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C | | |-GMREDI_CHECK :: GM Package. pkg/gmredi |
| 102 |
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C | | |
| 103 |
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C | |-PACKAGES_INIT_FIXED |
| 104 |
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C | | |-OBCS_INIT_FIXED :: Open bndy Package. see pkg/obcs |
| 105 |
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C | | |-FLT_INIT :: Floats Package. see pkg/flt |
| 106 |
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C | | |-GCHEM_INIT_FIXED :: tracer interface pachage, see pkg/gchem |
| 107 |
|
C | | |
| 108 |
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C | |-ZONAL_FILT_INIT :: FFT filter Package. see pkg/zonal_filt |
| 109 |
|
C | | |
| 110 |
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C | |-INI_CG2D :: 2d con. grad solver initialisation. |
| 111 |
|
C | | |
| 112 |
|
C | |-INI_CG3D :: 3d con. grad solver initialisation. |
| 113 |
|
C | | |
| 114 |
|
C | |-CONFIG_SUMMARY :: Provide synopsis of kernel setup. |
| 115 |
|
C | :: Includes annotated table of kernel |
| 116 |
|
C | :: parameter settings. |
| 117 |
|
C | |
| 118 |
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C |-CTRL_UNPACK :: Control vector support package. see pkg/ctrl |
| 119 |
|
C | |
| 120 |
|
C |-ADTHE_MAIN_LOOP :: Derivative evaluating form of main time stepping loop |
| 121 |
|
C ! :: Auotmatically gerenrated by TAMC/TAF. |
| 122 |
|
C | |
| 123 |
|
C |-CTRL_PACK :: Control vector support package. see pkg/ctrl |
| 124 |
|
C | |
| 125 |
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C |-GRDCHK_MAIN :: Gradient check package. see pkg/grdchk |
| 126 |
|
C | |
| 127 |
|
C |-THE_MAIN_LOOP :: Main timestepping loop routine. |
| 128 |
|
C | | |
| 129 |
|
C | |-INITIALISE_VARIA :: Set the initial conditions for time evolving |
| 130 |
|
C | | | :: variables |
| 131 |
|
C | | | |
| 132 |
|
C | | |-INI_LINEAR_PHISURF :: Set ref. surface Bo_surf |
| 133 |
|
C | | | |
| 134 |
|
C | | |-INI_CORI :: Set coriolis term. zero, f-plane, beta-plane, |
| 135 |
|
C | | | :: sphere optins are coded. |
| 136 |
|
C | | | |
| 137 |
|
C | | |-INI_CG2D :: 2d con. grad solver initialisation. |
| 138 |
|
C | | |-INI_CG3D :: 3d con. grad solver initialisation. |
| 139 |
|
C | | |-INI_MIXING :: Initialise diapycnal diffusivity. |
| 140 |
|
C | | |-INI_DYNVARS :: Initialise to zero all DYNVARS.h arrays (dynamical |
| 141 |
|
C | | | :: fields). |
| 142 |
|
C | | | |
| 143 |
|
C | | |-INI_FIELDS :: Control initialising model fields to non-zero |
| 144 |
|
C | | | |-INI_VEL :: Initialize 3D flow field. |
| 145 |
|
C | | | |-INI_THETA :: Set model initial temperature field. |
| 146 |
|
C | | | |-INI_SALT :: Set model initial salinity field. |
| 147 |
|
C | | | |-INI_PSURF :: Set model initial free-surface height/pressure. |
| 148 |
|
C | | | |-INI_PRESSURE :: Compute model initial hydrostatic pressure |
| 149 |
|
C | | | |
| 150 |
|
C | | |-INI_TR1 :: Set initial tracer 1 distribution. |
| 151 |
|
C | | | |
| 152 |
|
C | | |-THE_CORRECTION_STEP :: Step forward to next time step. |
| 153 |
|
C | | | | :: Here applied to move restart conditions |
| 154 |
|
C | | | | :: (saved in mid timestep) to correct level in |
| 155 |
|
C | | | | :: time (only used for pre-c35). |
| 156 |
|
C | | | | |
| 157 |
|
C | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure |
| 158 |
|
C | | | |-CORRECTION_STEP :: Pressure correction to momentum |
| 159 |
|
C | | | |-CYCLE_TRACER :: Move tracers forward in time. |
| 160 |
|
C | | | |-OBCS_APPLY :: Open bndy package. see pkg/obcs |
| 161 |
|
C | | | |-SHAP_FILT_APPLY :: Shapiro filter package. see pkg/shap_filt |
| 162 |
|
C | | | |-ZONAL_FILT_APPLY :: FFT filter package. see pkg/zonal_filt |
| 163 |
|
C | | | |-CONVECTIVE_ADJUSTMENT :: Control static instability mixing. |
| 164 |
|
C | | | | |-FIND_RHO :: Find adjacent densities. |
| 165 |
|
C | | | | |-CONVECT :: Mix static instability. |
| 166 |
|
C | | | | |-TIMEAVE_CUMULATE :: Update convection statistics. |
| 167 |
|
C | | | | |
| 168 |
|
C | | | |-CALC_EXACT_ETA :: Change SSH to flow divergence. |
| 169 |
|
C | | | |
| 170 |
|
C | | |-CONVECTIVE_ADJUSTMENT_INI :: Control static instability mixing |
| 171 |
|
C | | | | :: Extra time history interactions. |
| 172 |
|
C | | | | |
| 173 |
|
C | | | |-FIND_RHO :: Find adjacent densities. |
| 174 |
|
C | | | |-CONVECT :: Mix static instability. |
| 175 |
|
C | | | |-TIMEAVE_CUMULATE :: Update convection statistics. |
| 176 |
|
C | | | |
| 177 |
|
C | | |-PACKAGES_INIT_VARIABLES :: Does initialisation of time evolving |
| 178 |
|
C | | | | :: package data. |
| 179 |
|
C | | | | |
| 180 |
|
C | | | |-GMREDI_INIT :: GM package. ( see pkg/gmredi ) |
| 181 |
|
C | | | |-KPP_INIT :: KPP package. ( see pkg/kpp ) |
| 182 |
|
C | | | |-KPP_OPEN_DIAGS |
| 183 |
|
C | | | |-OBCS_INIT_VARIABLES :: Open bndy. package. ( see pkg/obcs ) |
| 184 |
|
C | | | |-PTRACERS_INIT :: multi. tracer package,(see pkg/ptracers) |
| 185 |
|
C | | | |-GCHEM_INIT : : tracer interface pkg (see pkh/gchem) |
| 186 |
|
C | | | |-AIM_INIT :: Interm. atmos package. ( see pkg/aim ) |
| 187 |
|
C | | | |-CTRL_MAP_INI :: Control vector package.( see pkg/ctrl ) |
| 188 |
|
C | | | |-COST_INIT :: Cost function package. ( see pkg/cost ) |
| 189 |
|
C | | | |-ECCO_INIT :: ECCO support package. ( see pkg/ecco ) |
| 190 |
|
C | | | |-INI_FORCING :: Set model initial forcing fields. |
| 191 |
|
C | | | | :: Either set in-line or from file as shown. |
| 192 |
|
C | | | |-READ_FLD_XY_RS(zonalWindFile) |
| 193 |
|
C | | | |-READ_FLD_XY_RS(meridWindFile) |
| 194 |
|
C | | | |-READ_FLD_XY_RS(surfQFile) |
| 195 |
|
C | | | |-READ_FLD_XY_RS(EmPmRfile) |
| 196 |
|
C | | | |-READ_FLD_XY_RS(thetaClimFile) |
| 197 |
|
C | | | |-READ_FLD_XY_RS(saltClimFile) |
| 198 |
|
C | | | |-READ_FLD_XY_RS(surfQswFile) |
| 199 |
|
C | | | |
| 200 |
|
C | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
| 201 |
|
C | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
| 202 |
|
C | | |-UPDATE_CG2D :: Update 2d conjugate grad. for Free-Surf. |
| 203 |
|
C | | |-STATE_SUMMARY :: Summarize model prognostic variables. |
| 204 |
|
C | | |-TIMEAVE_STATVARS :: Time averaging package ( see pkg/timeave ). |
| 205 |
|
C | | |
| 206 |
|
C | |-WRITE_STATE :: Controlling routine for IO to dump model state. |
| 207 |
|
C | | |-WRITE_REC_XYZ_RL :: Single file I/O |
| 208 |
|
C | | |-WRITE_FLD_XYZ_RL :: Multi-file I/O |
| 209 |
|
C | | |
| 210 |
|
C | |-MONITOR :: Monitor state ( see pkg/monitor ) |
| 211 |
|
C | |-CTRL_MAP_FORCING :: Control vector support package. ( see pkg/ctrl ) |
| 212 |
|
C====|>| |
| 213 |
|
C====|>| **************************** |
| 214 |
|
C====|>| BEGIN MAIN TIMESTEPPING LOOP |
| 215 |
|
C====|>| **************************** |
| 216 |
|
C====|>| |
| 217 |
|
C/\ | |-FORWARD_STEP :: Step forward a time-step ( AT LAST !!! ) |
| 218 |
|
C/\ | | | |
| 219 |
|
C/\ | | |-DUMMY_IN_STEPPING :: autodiff package ( pkg/autoduff ). |
| 220 |
|
C/\ | | |-CALC_EXACT_ETA :: Change SSH to flow divergence. |
| 221 |
|
C/\ | | |-CALC_SURF_DR :: Calculate the new surface level thickness. |
| 222 |
|
C/\ | | |-EXF_GETFORCING :: External forcing package. ( pkg/exf ) |
| 223 |
|
C/\ | | |-EXTERNAL_FIELDS_LOAD :: Control loading time dep. external data. |
| 224 |
|
C/\ | | | | :: Simple interpolcation between end-points |
| 225 |
|
C/\ | | | | :: for forcing datasets. |
| 226 |
|
C/\ | | | | |
| 227 |
|
C/\ | | | |-EXCH :: Sync forcing. in overlap regions. |
| 228 |
|
C/\ | | |-SEAICE_MODEL :: Compute sea-ice terms. ( pkg/seaice ) |
| 229 |
|
C/\ | | |-FREEZE :: Limit surface temperature. |
| 230 |
|
C/\ | | |-GCHEM_FIELD_LOAD :: load tracer forcing fields (pkg/gchem) |
| 231 |
|
C/\ | | | |
| 232 |
|
C/\ | | |-THERMODYNAMICS :: theta, salt + tracer equations driver. |
| 233 |
|
C/\ | | | | |
| 234 |
|
C/\ | | | |-INTEGRATE_FOR_W :: Integrate for vertical velocity. |
| 235 |
|
C/\ | | | |-OBCS_APPLY_W :: Open bndy. package ( see pkg/obcs ). |
| 236 |
|
C/\ | | | |-FIND_RHO :: Calculates [rho(S,T,z)-RhoConst] of a slice |
| 237 |
|
C/\ | | | |-GRAD_SIGMA :: Calculate isoneutral gradients |
| 238 |
|
C/\ | | | |-CALC_IVDC :: Set Implicit Vertical Diffusivity for Convection |
| 239 |
|
C/\ | | | | |
| 240 |
|
C/\ | | | |-OBCS_CALC :: Open bndy. package ( see pkg/obcs ). |
| 241 |
|
C/\ | | | |-EXTERNAL_FORCING_SURF:: Accumulates appropriately dimensioned |
| 242 |
|
C/\ | | | | | :: forcing terms. |
| 243 |
|
C/\ | | | | |-PTRACERS_FORCING_SURF :: Tracer package ( see pkg/ptracers ). |
| 244 |
|
C/\ | | | | |
| 245 |
|
C/\ | | | |-GMREDI_CALC_TENSOR :: GM package ( see pkg/gmredi ). |
| 246 |
|
C/\ | | | |-GMREDI_CALC_TENSOR_DUMMY :: GM package ( see pkg/gmredi ). |
| 247 |
|
C/\ | | | |-KPP_CALC :: KPP package ( see pkg/kpp ). |
| 248 |
|
C/\ | | | |-KPP_CALC_DUMMY :: KPP package ( see pkg/kpp ). |
| 249 |
|
C/\ | | | |-AIM_DO_ATMOS_PHYSICS :: Intermed. atmos package ( see pkg/aim ). |
| 250 |
|
C/\ | | | |-GAD_ADVECTION :: Generalised advection driver (multi-dim |
| 251 |
|
C/\ | | | | advection case) (see pkg/gad). |
| 252 |
|
C/\ | | | |-CALC_COMMON_FACTORS :: Calculate common data (such as volume flux) |
| 253 |
|
C/\ | | | |-CALC_DIFFUSIVITY :: Calculate net vertical diffusivity |
| 254 |
|
C/\ | | | | | |
| 255 |
|
C/\ | | | | |-GMREDI_CALC_DIFF :: GM package ( see pkg/gmredi ). |
| 256 |
|
C/\ | | | | |-KPP_CALC_DIFF :: KPP package ( see pkg/kpp ). |
| 257 |
|
C/\ | | | | |
| 258 |
|
C/\ | | | |-CALC_GT :: Calculate the temperature tendency terms |
| 259 |
|
C/\ | | | | | |
| 260 |
|
C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
| 261 |
|
C/\ | | | | | | :: ( see pkg/gad ) |
| 262 |
|
C/\ | | | | | |-KPP_TRANSPORT_T :: KPP non-local transport ( see pkg/kpp ). |
| 263 |
|
C/\ | | | | | |
| 264 |
|
C/\ | | | | |-EXTERNAL_FORCING_T :: Problem specific forcing for temperature. |
| 265 |
|
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
| 266 |
|
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gt for free-surface height. |
| 267 |
|
C/\ | | | | |
| 268 |
|
C/\ | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
| 269 |
|
C/\ | | | | |
| 270 |
|
C/\ | | | |-CALC_GS :: Calculate the salinity tendency terms |
| 271 |
|
C/\ | | | | | |
| 272 |
|
C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
| 273 |
|
C/\ | | | | | | :: ( see pkg/gad ) |
| 274 |
|
C/\ | | | | | |-KPP_TRANSPORT_S :: KPP non-local transport ( see pkg/kpp ). |
| 275 |
|
C/\ | | | | | |
| 276 |
|
C/\ | | | | |-EXTERNAL_FORCING_S :: Problem specific forcing for salt. |
| 277 |
|
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
| 278 |
|
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gs for free-surface height. |
| 279 |
|
C/\ | | | | |
| 280 |
|
C/\ | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
| 281 |
|
C/\ | | | | |
| 282 |
|
C/\ | | | |-CALC_GTR1 :: Calculate other tracer(s) tendency terms |
| 283 |
|
C/\ | | | | | |
| 284 |
|
C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
| 285 |
|
C/\ | | | | | :: ( see pkg/gad ) |
| 286 |
|
C/\ | | | | | |
| 287 |
|
C/\ | | | | |-EXTERNAL_FORCING_TR:: Problem specific forcing for tracer. |
| 288 |
|
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
| 289 |
|
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gs for free-surface height. |
| 290 |
|
C/\ | | | | |
| 291 |
|
C/\ | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
| 292 |
|
C/\ | | | | |
| 293 |
|
C/\ | | | |-PTRACERS_INTEGRATE :: Integrate other tracer(s) ( see pkg/ptracers ). |
| 294 |
|
C/\ | | | | | |
| 295 |
|
C/\ | | | | |-GAD_CALC_RHS :: Generalised advection package |
| 296 |
|
C/\ | | | | | | :: ( see pkg/gad ) |
| 297 |
|
C/\ | | | | | |-KPP_TRANSPORT_PTR:: KPP non-local transport ( see pkg/kpp ). |
| 298 |
|
C/\ | | | | | |
| 299 |
|
C/\ | | | | |-PTRACERS_FORCING :: Problem specific forcing for tracer. |
| 300 |
|
C/\ | | | | |-GCHEM_FORCING_INT :: tracer forcing for gchem pkg (if all |
| 301 |
|
C/\ | | | | | tendancy terms calcualted together) |
| 302 |
|
C/\ | | | | |-ADAMS_BASHFORTH2 :: Extrapolate tendencies forward in time. |
| 303 |
|
C/\ | | | | |-FREESURF_RESCALE_G :: Re-scale Gs for free-surface height. |
| 304 |
|
C/\ | | | | |-TIMESTEP_TRACER :: Step tracer field forward in time |
| 305 |
|
C/\ | | | | |
| 306 |
|
C/\ | | | |-OBCS_APPLY_TS :: Open bndy. package (see pkg/obcs ). |
| 307 |
|
C/\ | | | | |
| 308 |
|
C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
| 309 |
|
C/\ | | | |-OBCS_APPLY_TS :: Open bndy. package (see pkg/obcs ). |
| 310 |
|
C/\ | | | | |
| 311 |
|
C/\ | | | |-AIM_AIM2DYN_EXCHANGES :: Inetermed. atmos (see pkg/aim). |
| 312 |
|
C/\ | | | |-EXCH :: Update overlaps |
| 313 |
|
C/\ | | | |
| 314 |
|
C/\ | | |-DYNAMICS :: Momentum equations driver. |
| 315 |
|
C/\ | | | | |
| 316 |
|
C/\ | | | |-CALC_GRAD_PHI_SURF :: Calculate the gradient of the surface |
| 317 |
|
C/\ | | | | Potential anomaly. |
| 318 |
|
C/\ | | | |-CALC_VISCOSITY :: Calculate net vertical viscosity |
| 319 |
|
C/\ | | | | |-KPP_CALC_VISC :: KPP package ( see pkg/kpp ). |
| 320 |
|
C/\ | | | | |
| 321 |
|
C/\ | | | |-CALC_PHI_HYD :: Integrate the hydrostatic relation. |
| 322 |
|
C/\ | | | |-MOM_FLUXFORM :: Flux form mom eqn. package ( see |
| 323 |
|
C/\ | | | | pkg/mom_fluxform ). |
| 324 |
|
C/\ | | | |-MOM_VECINV :: Vector invariant form mom eqn. package ( see |
| 325 |
|
C/\ | | | | pkg/mom_vecinv ). |
| 326 |
|
C/\ | | | |-TIMESTEP :: Step momentum fields forward in time |
| 327 |
|
C/\ | | | |-OBCS_APPLY_UV :: Open bndy. package (see pkg/obcs ). |
| 328 |
|
C/\ | | | | |
| 329 |
|
C/\ | | | |-IMPLDIFF :: Solve vertical implicit diffusion equation. |
| 330 |
|
C/\ | | | |-OBCS_APPLY_UV :: Open bndy. package (see pkg/obcs ). |
| 331 |
|
C/\ | | | | |
| 332 |
|
C/\ | | | |-TIMEAVE_CUMUL_1T :: Time averaging package ( see pkg/timeave ). |
| 333 |
|
C/\ | | | |-TIMEAVE_CUMUATE :: Time averaging package ( see pkg/timeave ). |
| 334 |
|
C/\ | | | |-DEBUG_STATS_RL :: Quick debug package ( see pkg/debug ). |
| 335 |
|
C/\ | | | |
| 336 |
|
C/\ | | |-CALC_GW :: vert. momentum tendency terms ( NH, QH only ). |
| 337 |
|
C/\ | | | |
| 338 |
|
C/\ | | |-UPDATE_SURF_DR :: Update the surface-level thickness fraction. |
| 339 |
|
C/\ | | | |
| 340 |
|
C/\ | | |-UPDATE_CG2D :: Update 2d conjugate grad. for Free-Surf. |
| 341 |
|
C/\ | | | |
| 342 |
|
C/\ | | |-SOLVE_FOR_PRESSURE :: Find surface pressure. |
| 343 |
|
C/\ | | | |-CALC_DIV_GHAT :: Form the RHS of the surface pressure eqn. |
| 344 |
|
C/\ | | | |-CG2D :: Two-dim pre-con. conjugate-gradient. |
| 345 |
|
C/\ | | | |-CG3D :: Three-dim pre-con. conjugate-gradient solver. |
| 346 |
|
C/\ | | | |
| 347 |
|
C/\ | | |-THE_CORRECTION_STEP :: Step forward to next time step. |
| 348 |
|
C/\ | | | | |
| 349 |
|
C/\ | | | |-CALC_GRAD_PHI_SURF :: Return DDx and DDy of surface pressure |
| 350 |
|
C/\ | | | |-CORRECTION_STEP :: Pressure correction to momentum |
| 351 |
|
C/\ | | | |-CYCLE_TRACER :: Move tracers forward in time. |
| 352 |
|
C/\ | | | |-OBCS_APPLY :: Open bndy package. see pkg/obcs |
| 353 |
|
C/\ | | | |-SHAP_FILT_APPLY :: Shapiro filter package. see pkg/shap_filt |
| 354 |
|
C/\ | | | |-ZONAL_FILT_APPLY :: FFT filter package. see pkg/zonal_filt |
| 355 |
|
C/\ | | | |-CONVECTIVE_ADJUSTMENT :: Control static instability mixing. |
| 356 |
|
C/\ | | | | |-FIND_RHO :: Find adjacent densities. |
| 357 |
|
C/\ | | | | |-CONVECT :: Mix static instability. |
| 358 |
|
C/\ | | | | |-TIMEAVE_CUMULATE :: Update convection statistics. |
| 359 |
|
C/\ | | | | |
| 360 |
|
C/\ | | | |-CALC_EXACT_ETA :: Change SSH to flow divergence. |
| 361 |
|
C/\ | | | |
| 362 |
|
C/\ | | |-DO_FIELDS_BLOCKING_EXCHANGES :: Sync up overlap regions. |
| 363 |
|
C/\ | | | |-EXCH |
| 364 |
|
C/\ | | | |
| 365 |
|
C/\ | | |-GCHEM_FORCING_SEP :: tracer forcing for gchem pkg (if |
| 366 |
|
C/\ | | | tracer dependent tendencies calculated |
| 367 |
|
C/\ | | | separatly) |
| 368 |
|
C/\ | | | |
| 369 |
|
C/\ | | |-FLT_MAIN :: Float package ( pkg/flt ). |
| 370 |
|
C/\ | | | |
| 371 |
|
C/\ | | |-MONITOR :: Monitor package ( pkg/monitor ). |
| 372 |
|
C/\ | | | |
| 373 |
|
C/\ | | |-DO_THE_MODEL_IO :: Standard diagnostic I/O. |
| 374 |
|
C/\ | | | |-WRITE_STATE :: Core state I/O |
| 375 |
|
C/\ | | | |-TIMEAVE_STATV_WRITE :: Time averages. see pkg/timeave |
| 376 |
|
C/\ | | | |-AIM_WRITE_DIAGS :: Intermed. atmos diags. see pkg/aim |
| 377 |
|
C/\ | | | |-GMREDI_DIAGS :: GM diags. see pkg/gmredi |
| 378 |
|
C/\ | | | |-KPP_DO_DIAGS :: KPP diags. see pkg/kpp |
| 379 |
|
C/\ | | | |-SBO_CALC :: SBO diags. see pkg/sbo |
| 380 |
|
C/\ | | | |-SBO_DIAGS :: SBO diags. see pkg/sbo |
| 381 |
|
C/\ | | | |-GCHEM_DIAGS :: gchem diags. see pkg/gchem |
| 382 |
|
C/\ | | | |
| 383 |
|
C/\ | | |-WRITE_CHECKPOINT :: Do I/O for restart files. |
| 384 |
|
C/\ | | |
| 385 |
|
C/\ | |-COST_TILE :: Cost function package. ( see pkg/cost ) |
| 386 |
|
C<===|=| |
| 387 |
|
C<===|=| ************************** |
| 388 |
|
C<===|=| END MAIN TIMESTEPPING LOOP |
| 389 |
|
C<===|=| ************************** |
| 390 |
|
C<===|=| |
| 391 |
|
C | |-COST_FINAL :: Cost function package. ( see pkg/cost ) |
| 392 |
|
C | |
| 393 |
|
C |-WRITE_CHECKPOINT :: Final state storage, for restart. |
| 394 |
|
C | |
| 395 |
|
C |-TIMER_PRINTALL :: Computational timing summary |
| 396 |
|
C | |
| 397 |
|
C |-COMM_STATS :: Summarise inter-proc and inter-thread communication |
| 398 |
|
C :: events. |
| 399 |
|
C \ev |
| 400 |
|
C |
| 401 |
C |
C |
| 402 |
CEOI |
CEOI |
| 403 |
|
|
| 404 |
|
|
| 405 |
|
#include "AD_CONFIG.h" |
| 406 |
|
#include "PACKAGES_CONFIG.h" |
| 407 |
#include "CPP_OPTIONS.h" |
#include "CPP_OPTIONS.h" |
| 408 |
|
|
| 409 |
CBOP |
CBOP |
| 469 |
#include "PARAMS.h" |
#include "PARAMS.h" |
| 470 |
#include "DYNVARS.h" |
#include "DYNVARS.h" |
| 471 |
#ifdef ALLOW_NONHYDROSTATIC |
#ifdef ALLOW_NONHYDROSTATIC |
| 472 |
#include "CG3D.h" |
# include "CG3D.h" |
| 473 |
#endif |
#endif |
| 474 |
|
|
| 475 |
|
#ifdef ALLOW_ECCO_OPTIMIZATION |
| 476 |
|
# include "optim.h" |
| 477 |
|
#endif |
| 478 |
#ifdef ALLOW_AUTODIFF_TAMC |
#ifdef ALLOW_AUTODIFF_TAMC |
| 479 |
#include "tamc.h" |
# include "tamc.h" |
|
#include "cost.h" |
|
|
#include "adcost.h" |
|
| 480 |
#endif |
#endif |
| 481 |
|
|
| 482 |
C !INPUT/OUTPUT PARAMETERS: |
C !INPUT/OUTPUT PARAMETERS: |
| 495 |
C myCurrentIter - Iteration counter for this thread |
C myCurrentIter - Iteration counter for this thread |
| 496 |
INTEGER myCurrentIter |
INTEGER myCurrentIter |
| 497 |
_RL myCurrentTime |
_RL myCurrentTime |
| 498 |
|
logical exst |
| 499 |
|
logical lastdiva |
| 500 |
|
#ifndef ALLOW_ECCO_OPTIMIZATION |
| 501 |
|
integer optimcycle |
| 502 |
|
#endif |
| 503 |
CEOP |
CEOP |
| 504 |
|
c-- set default: |
| 505 |
|
#ifndef ALLOW_ECCO_OPTIMIZATION |
| 506 |
|
optimcycle = 0 |
| 507 |
|
#endif |
| 508 |
|
lastdiva = .TRUE. |
| 509 |
|
|
| 510 |
|
#ifdef ALLOW_DEBUG |
| 511 |
|
IF (debugMode) CALL DEBUG_ENTER('THE_MODEL_MAIN',myThid) |
| 512 |
|
#endif |
| 513 |
|
|
| 514 |
C-- This timer encompasses the whole code |
C-- This timer encompasses the whole code |
| 515 |
CALL TIMER_START('ALL [THE_MODEL_MAIN]',myThid) |
CALL TIMER_START('ALL [THE_MODEL_MAIN]',myThid) |
| 516 |
|
|
| 517 |
|
#ifdef ALLOW_DEBUG |
| 518 |
|
IF (debugMode) CALL DEBUG_CALL('INITIALISE_FIXED',myThid) |
| 519 |
|
#endif |
| 520 |
|
|
| 521 |
C-- Set model configuration (fixed arrays) |
C-- Set model configuration (fixed arrays) |
| 522 |
CALL TIMER_START('INITIALISE_FIXED [THE_MODEL_MAIN]',myThid) |
CALL TIMER_START('INITIALISE_FIXED [THE_MODEL_MAIN]',myThid) |
| 523 |
CALL INITIALISE_FIXED( myThid ) |
CALL INITIALISE_FIXED( myThid ) |
| 524 |
CALL TIMER_STOP ('INITIALISE_FIXED [THE_MODEL_MAIN]',myThid) |
CALL TIMER_STOP ('INITIALISE_FIXED [THE_MODEL_MAIN]',myThid) |
| 525 |
|
|
| 526 |
myCurrentTime = startTime |
myCurrentTime = startTime |
| 527 |
myCurrentIter = nIter0 |
myCurrentIter = nIter0 |
| 528 |
|
|
| 529 |
#if ( defined (ALLOW_ADJOINT_RUN) || \ |
#if ( defined (ALLOW_ADMTLM) ) |
| 530 |
defined (ALLOW_GRADIENT_CHECK) || \ |
c |
| 531 |
defined (ALLOW_ECCO_OPTIMIZATION) ) |
CALL TIMER_START('ADMTLM_DRIVER [THE_MODEL_MAIN]',mythid) |
| 532 |
|
CALL ADMTLM_DRIVER ( myThid ) |
| 533 |
|
CALL TIMER_STOP ('ADMTLM_DRIVER [THE_MODEL_MAIN]',mythid) |
| 534 |
|
c |
| 535 |
|
#elif ( defined (ALLOW_AUTODIFF)) |
| 536 |
|
|
| 537 |
|
# ifndef EXCLUDE_CTRL_PACK |
| 538 |
_BEGIN_MASTER( mythid ) |
_BEGIN_MASTER( mythid ) |
| 539 |
IF (myProcId .eq. 0) THEN |
IF (myProcId .eq. 0) THEN |
| 540 |
CALL CTRL_UNPACK( mycurrentiter, mycurrenttime, mythid ) |
inquire( file='costfinal', exist=exst ) |
| 541 |
|
IF ( .NOT. exst .AND. niter0 .EQ. 0 ) THEN |
| 542 |
|
CALL TIMER_START('CTRL_UNPACK [THE_MODEL_MAIN]',mythid) |
| 543 |
|
CALL CTRL_UNPACK( .TRUE. , mythid ) |
| 544 |
|
CALL TIMER_STOP ('CTRL_UNPACK [THE_MODEL_MAIN]',mythid) |
| 545 |
|
IF ( optimcycle.EQ.0 .AND. mycurrentiter.EQ.niter0 ) THEN |
| 546 |
|
CALL TIMER_START('CTRL_PACK [THE_MODEL_MAIN]',mythid) |
| 547 |
|
CALL CTRL_PACK( .TRUE. , mythid ) |
| 548 |
|
CALL TIMER_STOP ('CTRL_PACK [THE_MODEL_MAIN]',mythid) |
| 549 |
|
ENDIF |
| 550 |
|
ENDIF |
| 551 |
ENDIF |
ENDIF |
| 552 |
_END_MASTER( mythid ) |
_END_MASTER( mythid ) |
| 553 |
_BARRIER |
_BARRIER |
| 554 |
|
# endif /* EXCLUDE_CTRL_PACK */ |
| 555 |
|
|
| 556 |
fc = 0.0 |
CALL COST_DEPENDENT_INIT ( mythid ) |
| 557 |
adfc = 1.0 |
_BARRIER |
| 558 |
|
|
| 559 |
|
# if ( defined (ALLOW_TANGENTLINEAR_RUN) ) |
| 560 |
|
c |
| 561 |
|
CALL TIMER_START('G_THE_MAIN_LOOP [TANGENT RUN]',mythid) |
| 562 |
|
CALL G_THE_MAIN_LOOP ( myCurrentTime, myCurrentIter, myThid ) |
| 563 |
|
CALL TIMER_STOP ('G_THE_MAIN_LOOP [TANGENT RUN]',mythid) |
| 564 |
|
c |
| 565 |
|
# elif ( defined (ALLOW_ADJOINT_RUN) || \ |
| 566 |
|
defined (ALLOW_ECCO_OPTIMIZATION) ) |
| 567 |
|
c |
| 568 |
|
# ifdef ALLOW_DIVIDED_ADJOINT |
| 569 |
|
c-- The following assumes the TAF option '-pure' |
| 570 |
|
inquire( file='costfinal', exist=exst ) |
| 571 |
|
IF ( .NOT. exst) THEN |
| 572 |
|
CALL TIMER_START('MDTHE_MAIN_LOOP [MD RUN]', mythid) |
| 573 |
|
CALL MDTHE_MAIN_LOOP ( myCurrentTime, myCurrentIter, mythid ) |
| 574 |
|
CALL TIMER_STOP ('MDTHE_MAIN_LOOP [MD RUN]', mythid) |
| 575 |
|
CALL COST_FINAL_STORE ( mythid, lastdiva ) |
| 576 |
|
ELSE |
| 577 |
|
CALL TIMER_START('ADTHE_MAIN_LOOP [ADJOINT RUN]', mythid) |
| 578 |
|
CALL ADTHE_MAIN_LOOP ( mythid ) |
| 579 |
|
CALL TIMER_STOP ('ADTHE_MAIN_LOOP [ADJOINT RUN]', mythid) |
| 580 |
|
CALL COST_FINAL_RESTORE ( mythid, lastdiva ) |
| 581 |
|
ENDIF |
| 582 |
|
c-- |
| 583 |
|
# else /* ALLOW_DIVIDED_ADJOINT undef */ |
| 584 |
CALL TIMER_START('ADTHE_MAIN_LOOP [ADJOINT RUN]', mythid) |
CALL TIMER_START('ADTHE_MAIN_LOOP [ADJOINT RUN]', mythid) |
| 585 |
CALL ADTHE_MAIN_LOOP ( mythid ) |
CALL ADTHE_MAIN_LOOP ( mythid ) |
| 586 |
CALL TIMER_STOP ('ADTHE_MAIN_LOOP [ADJOINT RUN]', mythid) |
CALL TIMER_STOP ('ADTHE_MAIN_LOOP [ADJOINT RUN]', mythid) |
| 587 |
_BARRIER |
# endif /* ALLOW_DIVIDED_ADJOINT */ |
| 588 |
|
c |
| 589 |
|
# endif |
| 590 |
|
|
| 591 |
|
# ifndef EXCLUDE_CTRL_PACK |
| 592 |
_BEGIN_MASTER( mythid ) |
_BEGIN_MASTER( mythid ) |
| 593 |
IF (myProcId .eq. 0) THEN |
IF ( myProcId .eq. 0 .AND. lastdiva ) THEN |
| 594 |
call CTRL_PACK( mycurrentiter, mycurrenttime, mythid ) |
CALL TIMER_START('CTRL_PACK [THE_MODEL_MAIN]',mythid) |
| 595 |
|
call CTRL_PACK( .FALSE. , mythid ) |
| 596 |
|
CALL TIMER_STOP ('CTRL_PACK [THE_MODEL_MAIN]',mythid) |
| 597 |
ENDIF |
ENDIF |
| 598 |
_END_MASTER( mythid ) |
_END_MASTER( mythid ) |
| 599 |
_BARRIER |
_BARRIER |
| 600 |
|
# endif /* EXCLUDE_CTRL_PACK */ |
| 601 |
|
|
| 602 |
|
|
| 603 |
#ifdef ALLOW_GRADIENT_CHECK |
# ifdef ALLOW_GRDCHK |
| 604 |
if (useGrdchk) then |
IF ( useGrdchk .AND. lastdiva ) THEN |
| 605 |
CALL TIMER_START('GRDCHK_MAIN [ADJOINT RUN]', mythid) |
CALL TIMER_START('GRDCHK_MAIN [THE_MODEL_MAIN]',mythid) |
| 606 |
CALL GRDCHK_MAIN( mythid ) |
CALL GRDCHK_MAIN( mythid ) |
| 607 |
CALL TIMER_STOP ('GRDCHK_MAIN [ADJOINT RUN]', mythid) |
CALL TIMER_STOP ('GRDCHK_MAIN [THE_MODEL_MAIN]',mythid) |
| 608 |
_BARRIER |
_BARRIER |
| 609 |
end if |
ENDIF |
| 610 |
#endif |
# endif |
|
|
|
|
#else /* ALLOW_ADJOINT_RUN undef */ |
|
| 611 |
|
|
| 612 |
C-- Call time stepping loop of full model |
#else /* ALL AD-related undef */ |
|
CALL TIMER_START('THE_MAIN_LOOP [THE_MODEL_MAIN]',myThid) |
|
|
CALL THE_MAIN_LOOP(myCurrentTime, myCurrentIter, myThid ) |
|
|
CALL TIMER_STOP ('THE_MAIN_LOOP [THE_MODEL_MAIN]',myThid) |
|
| 613 |
|
|
| 614 |
#endif /* ALLOW_ADJOINT_RUN */ |
#ifdef ALLOW_DEBUG |
| 615 |
|
IF (debugMode) CALL DEBUG_CALL('THE_MAIN_LOOP',myThid) |
| 616 |
|
#endif |
| 617 |
|
|
| 618 |
C-- Final checkpoint (incase the in-loop checkpoint was missed) |
C-- Call time stepping loop of full model |
| 619 |
CALL TIMER_START('WRITE_CHECKPOINT [THE_MODEL_MAIN]',myThid) |
CALL TIMER_START('THE_MAIN_LOOP [THE_MODEL_MAIN]',myThid) |
| 620 |
|
CALL THE_MAIN_LOOP( myCurrentTime, myCurrentIter, myThid ) |
| 621 |
|
CALL TIMER_STOP ('THE_MAIN_LOOP [THE_MODEL_MAIN]',myThid) |
| 622 |
|
|
| 623 |
|
#endif /* ALLOW_TANGENTLINEAR_RUN ALLOW_ADJOINT_RUN ALLOW_ADMTLM_RUN */ |
| 624 |
|
|
| 625 |
|
C-- Final checkpoint (in case the in-loop checkpoint was missed) |
| 626 |
|
CALL TIMER_START('WRITE_CHECKPOINT [THE_MODEL_MAIN]',myThid) |
| 627 |
|
CALL PACKAGES_WRITE_PICKUP( |
| 628 |
|
I .TRUE., myCurrentTime, myCurrentIter, myThid ) |
| 629 |
CALL WRITE_CHECKPOINT( |
CALL WRITE_CHECKPOINT( |
| 630 |
& .TRUE., myCurrentTime, myCurrentIter, myThid ) |
I .TRUE., myCurrentTime, myCurrentIter, myThid ) |
| 631 |
CALL TIMER_STOP ('WRITE_CHECKPOINT [THE_MODEL_MAIN]',myThid) |
CALL TIMER_STOP ('WRITE_CHECKPOINT [THE_MODEL_MAIN]',myThid) |
| 632 |
|
|
| 633 |
CALL TIMER_STOP ('ALL [THE_MODEL_MAIN]',myThid) |
CALL TIMER_STOP ('ALL [THE_MODEL_MAIN]',myThid) |
| 634 |
|
|
| 635 |
|
#ifdef ALLOW_MNC |
| 636 |
|
C Close all open NetCDF files |
| 637 |
|
_BEGIN_MASTER( mythid ) |
| 638 |
|
CALL MNC_FILE_CLOSE_ALL() |
| 639 |
|
_END_MASTER( mythid ) |
| 640 |
|
#endif |
| 641 |
|
|
| 642 |
C-- Write timer statistics |
C-- Write timer statistics |
| 643 |
IF ( myThid .EQ. 1 ) THEN |
IF ( myThid .EQ. 1 ) THEN |
| 645 |
CALL COMM_STATS |
CALL COMM_STATS |
| 646 |
ENDIF |
ENDIF |
| 647 |
|
|
| 648 |
|
#ifdef ALLOW_DEBUG |
| 649 |
|
IF (debugMode) CALL DEBUG_LEAVE('THE_MODEL_MAIN',myThid) |
| 650 |
|
#endif |
| 651 |
|
|
| 652 |
RETURN |
RETURN |
| 653 |
END |
END |
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