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Merge changes from main trunk: o changed param. list for call obcs_calc in thermodynamics o flow directives in the_correction_step not needed anymore Remove forward_step for ecco-branch
Updating ecco-branch-mod1 to checkpoint44. Will be tagged ecco-branch-mod2.
Fixed AD-related problems: o Store directives up-to-date with re-arranged Adams-Bashforth (mainly thermodynamics.F) o New store directives for multi-dim. advection schemes * new CPP flag ALLOW_MULTI_DIM_ADVECTION * new common block and key passkey (mainly gad_advection.F) o Modified store directives for split of dynamics/thermodynamics for the case ALLOW_KPP o Cleaned argument list for timestep_tracer.F
Bringing comments up to data and formatting for document extraction.
"Volume exact-Conservation" modified for non-linear free-surface + Crank-Nickelson
Added CPP option ALLOW_PASSIVE_TRACER for TR1.h related fields.
o Added grdchk package handling o Added passive tracer handling
the default is now to call the filter after solve_for_pressure
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
Modifications/fixes to support TAMC differentiability (mostly missing or wrong directives).
Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
calc_grad_phi_surf (replace calc_grad_eta_surf) to get directly gradient of Phi_Surf
change in calling Time-Average routine (new package) ; and add etaN as argument of calc_grad_eta_surf
recover (after checkpoint35) time average output
Added conditional for calling CORRECTION_STEP() to facilitate fixed flow, passive trac expts.
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
file the_correction_step.F was initially added on branch branch-atmos-merge.
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