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implement real fresh water flux with non-linear free-surface
o add include FFIELDS.h (needed for USE_NATURAL_OBC) o IF(nonHydrostatic) was missing in an ALLOW_NONHYDROSTATIC bloc o add argument myIter & myTime to S/R routine solve_for_pressure
Bringing comments up to data and formatting for document extraction.
"Volume exact-Conservation" modified for non-linear free-surface + Crank-Nickelson
Moved cg3d_x into DYNVARS.h and renamed it to phi_nh. - cg3d and cg2d now look more similar - output formatted to fit Chris's tastes (I think)
Missed the IF(debugMode) around DEBUG stuff.
Added a debugMode that uses same statistics stuff as monitor.F Can be disabled with -DEXCLUDE_DEBUGMODE. Turn on at run-time with debugMode=.true. Default is enabled but off.
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
See doc/tag-index and doc/notes_c37_adj.txt Preparation for stand-alone autodifferentiability.
Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
Superficial change: moved the printing of residual and iterations up from cg2d() to solve_for_pressure(). This is in preparation for more useful/complete daignostics from the model as a whole.
all potentials (cg2d_x, cg3d_x, phiHyd) have units of P/rho in ocean AND atmos affects 2D and 3D solver (Matrix divided by g) for both atmos and ocean.
separate the state variable "eta" from the 2D solver solution cg2d_x
remove unused CPP_kee
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Removed inclusion of cg3d_x in cg2d_b. No change to solution.
Various updates for OBCs and Non-hydrostatic routines. o OBCs now fits into time-stepping properly o div.G has been moved to solve_for_pressure()
Added CPP macro ALLOW_OBCS to include/exclude open boundary code.
Moved the final exchange of pressure (cg2d_x or cg3d_x) from the solve to solve_for_pressure.F so that the adjoint knows whats going on.
Modifications for non-hydrostatic ability + updates for open-boundaries.
Added IMPLICIT NONE in a lot of subroutines. Also corrected the recip_Rhonil bug: we didn't set it in ini_parms.F
Changes to allow for atmospheric integration builds of the code
Changes to support - g77 compilation under Linux - LR(1) form of 64-bit is D or E for constants - Modified adjoint of exch with adjoint variables acuumulated.
Various corrections: o do_gterm_blocking..() is fixed to work with new time-stepping o CPP_OPTIONS.h now contains #define ALLOW_CD
Merge of GM Redi and spherical polar and inplicit diffusion and CD. Everything for a global run is now included, however, still some discrepancies with GM Redi.
$Id to $Header changes
Further $Id to $Header conversions
Initial revision
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