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release1_p14 o Added interpolation routine pkg/exf/new_interp.F for on-the-fly interpolation. Enable with USE_EXF_INTERPOLATION and specify input grids in data.exf o Added direct pressure solver pkg/solver. See pkg/solver/README.directSolver for instructions.
o solve_for_pressure : set cg2d_x to zero where OBCS are applied (corresponds to checkpoint45a_post in MAIN branch)
Changes encapsulated by checkpoint43a-release1mods and chkpt44d_post
on the main trunk.
These are:
o added missing EXCLUDE_MONITOR flags
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi
(incompatible typ in MIN/MAX expressions caused problems
on IBM SP3)
o in genmake added variable MAKEDEPEND
plus resetting for case SunOS
o added timer_stats.c routine for IBM SP3
o removed variables in dynamics
o real fresh water flux implemented with non-linear free-surface.
o few fix (mask in shap_s2, EmPmR in external_field_load,
USE_NATURAL_BCS in solve_for_P);
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P
o merge of relevant stuff from the ecco-branch:
- genmake: removed $S64 overwrite for case SunOS
- pkg/exf: update and corrections for field swapping and obcs
- pkg/ecco: parameter lists for the_model_main, the_main_loop
harmonized between ECCO and MITgcm
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice
updated checkpointing_lev... lists for obcs
- model/src: minor changes in forward_step, plot_field
added directive for divided adjoint in the_main_loop
- pkg/mdsio: added mdsio_gl_slice
o check parameters & config (chkpt44a_pre,post)
o OBC and NonLin_FrSurf.
o fix bug in mom_vi_del2uv
o select when filters are applied ; add options to zonal_filter (data.zonfilt)
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection)
o update AIM experiments (NCEP input files)
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf)
o added some stuff for AD
These were merged with
cvs co -r release1 -P MITgcm
cd MITgcm
cvs update -kk
cvs update -j checkpoint43a-release1mods -j chkpt44d_post -d -P -kk
Bringing comments up to data and formatting for document extraction.
"Volume exact-Conservation" modified for non-linear free-surface + Crank-Nickelson
Moved cg3d_x into DYNVARS.h and renamed it to phi_nh. - cg3d and cg2d now look more similar - output formatted to fit Chris's tastes (I think)
Missed the IF(debugMode) around DEBUG stuff.
Added a debugMode that uses same statistics stuff as monitor.F Can be disabled with -DEXCLUDE_DEBUGMODE. Turn on at run-time with debugMode=.true. Default is enabled but off.
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
See doc/tag-index and doc/notes_c37_adj.txt Preparation for stand-alone autodifferentiability.
Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
Superficial change: moved the printing of residual and iterations up from cg2d() to solve_for_pressure(). This is in preparation for more useful/complete daignostics from the model as a whole.
all potentials (cg2d_x, cg3d_x, phiHyd) have units of P/rho in ocean AND atmos affects 2D and 3D solver (Matrix divided by g) for both atmos and ocean.
separate the state variable "eta" from the 2D solver solution cg2d_x
remove unused CPP_kee
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Removed inclusion of cg3d_x in cg2d_b. No change to solution.
Various updates for OBCs and Non-hydrostatic routines. o OBCs now fits into time-stepping properly o div.G has been moved to solve_for_pressure()
Added CPP macro ALLOW_OBCS to include/exclude open boundary code.
Moved the final exchange of pressure (cg2d_x or cg3d_x) from the solve to solve_for_pressure.F so that the adjoint knows whats going on.
Modifications for non-hydrostatic ability + updates for open-boundaries.
Added IMPLICIT NONE in a lot of subroutines. Also corrected the recip_Rhonil bug: we didn't set it in ini_parms.F
Changes to allow for atmospheric integration builds of the code
Changes to support - g77 compilation under Linux - LR(1) form of 64-bit is D or E for constants - Modified adjoint of exch with adjoint variables acuumulated.
Various corrections: o do_gterm_blocking..() is fixed to work with new time-stepping o CPP_OPTIONS.h now contains #define ALLOW_CD
Merge of GM Redi and spherical polar and inplicit diffusion and CD. Everything for a global run is now included, however, still some discrepancies with GM Redi.
$Id to $Header changes
Further $Id to $Header conversions
Initial revision
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