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Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
AIM (Atmosphere Intermediate Physics) define as a standard package
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Package structure rearranged to comply with standard. Includes useKPP, useGMRedi. Tested for exp(0,2,4).
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