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Bringing comments up to data and formatting for document extraction.
Added a few re-initialisations for TAF.
o Added grdchk package handling o Added passive tracer handling
Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
AIM (Atmosphere Intermediate Physics) define as a standard package
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
file packages_init_variables.F was initially added on branch branch-atmos-merge.
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