Parent Directory
| 
Revision Log
| 
Revision Graph
| Links to HEAD: | (view) (download) (annotate) |
| Links to checkpoint63a: | (view) (download) (annotate) |
| Sticky Tag: |
Add parameters that allow to turn of parts of the adjoint code at run time. For now, there are only useKPPinAdMode, useGMrediInAdMode, and useSEAICEinAdMode. These parameters are set in data.pkg. This is the lazy coward's version of doing this, but is still useful for debugging. In order to do it right, everything needs to be moved to pkg/autodiff.
Pieces that are needed to use model/src/forward_step.F and model/src/forward_step.F along with pkg/ecco. This capability is still in testing phase.
move "useOASIS" from PARAMS.h to EEPARAMS.h and read it from "eedata"
add hooks for new packages OASIS, the package will follow (hooks exclude the seaice pkg for now)
initialise variable "useEMBED_FILES"
Adding the shell of, and the hooks to, a new package that will be used to model melting and freezing of vertical glacier ice fronts: Modified Files: doc/tag-index model/inc/PARAMS.h model/src/do_oceanic_phys.F model/src/external_forcing.F model/src/packages_boot.F model/src/packages_check.F model/src/packages_init_fixed.F model/src/packages_init_variables.F model/src/packages_readparms.F Added Files: pkg/icefront/ICEFRONT.h pkg/icefront/ICEFRONT_OPTIONS.h pkg/icefront/icefront_check.F pkg/icefront/icefront_description.tex pkg/icefront/icefront_diagnostics_init.F pkg/icefront/icefront_init_fixed.F pkg/icefront/icefront_init_varia.F pkg/icefront/icefront_readparms.F pkg/icefront/icefront_tendency_apply.F pkg/icefront/icefront_thermodynamics.F
useSMOOTH hard-coded (T when ALLOW_SMOOTH is defined)
Added calls to layers package
new pkg "down_slope".
From Nicolas: add package cheapaml
added check, readparms, and more diagnostice to pkg/salt_plume also changed package flag from useSaltPlume to useSALT_PLUME
added pkg/salt_plume by gathering code, which were previously spread around various files in model/inc and model/src results remain numerically identical to before, as a first step towards adding more options, etc., to this package
Fix a bug reported by An Nguyen: calc_salt_plume_depth requires that sigmaR be available. Bug fixed by adding flag "usePLUME", which is also a first step for addition of pkg/plume
dependencies: pkg/profiles requires pkg/cal
useCAL now set to .T. if useEXF=.T.
Make useEXF a runtime flag.
add flag "useGAD" (turned on from temp,saltStepping & usePtracers)
clean-up multi-threaded problems (reported by debugger tcheck on ACES).
add hooks for atm2d package
add the regrid package hooks
Adding template package MYPACKAGE to serve as reference. Does nothing.
move calendarDumps from "data" to "data.cal" and clean-up the code with a simple call to pkg/cal S/R: CAL_TIME2WRITE (the former piece of code started to spread over newly checked-in S/R) add useEXF & useCAL flags (for now, set in hard-coded way)
add on/off flag for package OFFLINE
o add hooks for new package shelfice, painless
make embed_files act more like a normal package per JMC's suggestions
o add hooks for new package rbcs
New package for controlling termination of the model based on the wall clock:
This is handy for those of us who keep losing 5000 cpuhours because the model
took 5 minutes longer than it did the day before.
To use:
In package.conf, add runclock
In data.pkg, add useRunClock=.TRUE.
Add data.runclock to read
&RUNCLOCK
RC_maxtime_hr=2,
RC_maxtime_mi=30,
RC_maxtime_sc=0,
&
The package also write the delta Wall Clock between each model step.
Who can explain a 30% slow down after 60 iterations? Who even knew about it?
Now you can find out lots of dark secrets about the EM EYE TEE GEE SEE EM...
Added support for pkg/matrix
GCHEM: introduced a useGCHEM runtime flag
o do package initialization earlier in the boot-up sequence - make MNC follow the package guidelines
o prepare addition of new packages GGL90 and OPPS - new parameters useGGL90 and useOPPS - include call to the new routines at the (hopefully) right places
o add calls for two new packages
- pp81 (Packanowski and Philander, 1981), Richardson number and
stratification dependent mixing
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme
Commiting new energy balance model to repository o package is pkg/ebm o verif. is verification/global_ocean_ebm o references are in ebm_driver.F Will need long integration testing.
o read the MNC run-time params at the eeboot stage - mnc will be gracefully disabled if the data.mnc file does not exist o add look-up tables for AJA's unlimited-dim interface
o add "useMNC" flag for run-time selection of MNC
Add use parameter for diagnostics package
Namelist gridalt and fizhi flags
remove comments
use the new thermodynamic Sea-Ice pkg: thSIce
add new package "land" ; move CALL AIM_INITIALISE from packages_readparms.F to packages_init_fixed.F
Merging from release1_p12: o Modifications for using pkg/exf with pkg/seaice - improved description of the various forcing configurations - added basic radiation bulk formulae to pkg/exf - units/sign fix for evap computation in exf_getffields.F - updated verification/global_with_exf/results/output.txt o Added pkg/sbo for computing IERS Special Bureau for the Oceans (SBO) core products, including oceanic mass, center-of-mass, angular, and bottom pressure (see pkg/sbo/README.sbo). o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F to avoid negative values in shallow regions. - updated verification/natl_box/results/output.txt - updated verification/lab_sea/results/output.txt o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F o Added useSingleCpuIO option (see PARAMS.h). o Updated useSingleCpuIO option in mdsio_writefield.F to work with multi-field files, e.g., for single-file pickup. o pkg/seaice: - bug fix in growth.F: QNET for no shortwave case - added HeffFile for specifying initial sea-ice thickness - changed SEAICE_EXTERNAL_FLUXES wind stress implementation o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, kpp_transport_t.F, forward_step.F, and the_main_loop.F o pkg/seaice: - adjoint-friendly modifications - added a SEAICE_WRITE_PICKUP at end of the_model_main.F
checkpoint47f_post
Merging from release1_p10:
o modifications for using pkg/exf with pkg/seaice
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING
and SEAICE_EXTERNAL_FLUXES
- pkg/exf CPP options EXF_READ_EVAP and
EXF_NO_BULK_COMPUTATIONS
- usage examples are Experiments 8 and 9 in
verification/lab_sea/README
- verification/lab_sea default experiment now uses
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf
Two packages: bulk_force (Bulk forcing) and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 Earlier integration from Stephaine Dutkiewicz and Patrick Heimbach. Two ifdef statements for compile time, ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE Two switches in data.pkg to turn on at run-time: cat data.pkg # Packages &PACKAGES useBulkForce=.TRUE., useThermSeaIce=.TRUE., & WARNING: useSEAICE and useThermSEAICE are mutually exclusive. The bulk package requires an additional parameter file with two namelists, data.ice and data.blk. c ADAPTED FROM: c LANL CICE.v2.0.2 c----------------------------------------------------------------------- c.. thermodynamics (vertical physics) based on M. Winton 3-layer model c.. See Bitz, C. M. and W. H. Lipscomb, 1999: "An energy-conserving c.. thermodynamic sea ice model for climate study." J. Geophys. c.. Res., 104, 15669 - 15677. c.. Winton, M., 1999: "A reformulated three-layer sea ice model." c.. Submitted to J. Atmos. Ocean. Technol. c.. authors Elizabeth C. Hunke and William Lipscomb c.. Fluid Dynamics Group, Los Alamos National Laboratory c-----------------------------------------------------------------------
Two packages: bulk_forcing (Bulk forcing) and thermodynamic_seaice (adapted from LANL CICE.v2.0.2) Earlier integration from Stephaine Dutkiewicz and Patrick Heimbach. Two ifdef statements for compile time, ALLOW_TSEAICE and ALLOW_BULKFORMULA Two switches in data.pkg to turn on at run-time: cat data.pkg # Packages &PACKAGES useBulkf=.TRUE., useTSeaIce=.TRUE., & The bulk package requires an additional parameter file with two namelists. cat data.blk &BULKF_PARM01 RainFile= 'ncep_precip_m_cubed.bin', SolarFile= 'ncep_downsolr_cubed.bin', AirTempFile= 'ncep_tair_cubed.bin', AirhumidityFile='ncep_qair_g_cubed.bin', LongwaveFile= 'ncep_netlw_cubed.bin', UWindFile= 'ncep_uwind_cubed.bin', VWindFile= 'ncep_vwind_cubed.bin', WspeedFile= ' ', RunoffFile= ' ', QnetFile= ' ', EmPFile= 'ncep_emp_calc_cubed.bin', CloudFile= 'ncep_totalcloud_cubed.bin', & &BULKF_PARM02 qnet_off=0.0, empmr_off=0.0, conservcycle=311040000., & c ADAPTED FROM: c LANL CICE.v2.0.2 c----------------------------------------------------------------------- c.. thermodynamics (vertical physics) based on M. Winton 3-layer model c.. See Bitz, C. M. and W. H. Lipscomb, 1999: "An energy-conserving c.. thermodynamic sea ice model for climate study." J. Geophys. c.. Res., 104, 15669 - 15677. c.. Winton, M., 1999: "A reformulated three-layer sea ice model." c.. Submitted to J. Atmos. Ocean. Technol. c.. authors Elizabeth C. Hunke and William Lipscomb c.. Fluid Dynamics Group, Los Alamos National Laboratory c----------------------------------------------------------------------- WARNING: useSEAICE and useTSEAICE are mutually exclusive. todo: thermodynamic.F should be reviewed and cleaned up a bit.
Merging from release1_p8 branch: Adding package parameters and hooks for new seaice package.
Added PTRACERS package
This allows an arbitrary number of passive tracers to be integrated
forward simultaneously with the dynamicaly model.
+ Implemented so far:
- basic forward algorithm (time-stepping, advection, diffusion, convection)
- I/O and checkpointing
- GM/Redi *but* using the GM/Redi coefficient of Salt
+ Not implemented so far:
- KPP
- OBCS
+ No specific example supplied (yet) but global_ocean.90x40x15 has the
necessary data.ptracer file. Simply use -enable=ptracers and uncomment
line in data.pkg. PTRACER01 then reproduces Salt exactly.
+ This package is disabled by default since it increases storage.
zonal_filt parameters are now in a specific data file (data.zonfilt)
Bringing comments up to data and formatting for document extraction.
Added package "flt". o pkg/flt o verification/flt_example o visualization of trajectories supplied o works but output not available to testscript
o Added grdchk package handling o Added passive tracer handling
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
AIM (Atmosphere Intermediate Physics) define as a standard package
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Package structure rearranged to comply with standard. Includes useKPP, useGMRedi. Tested for exp(0,2,4).
This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, select a symbolic revision name using the selection box, or choose 'Use Text Field' and enter a numeric revision.
| ViewVC Help | |
| Powered by ViewVC 1.1.22 |