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small changes associated with NonLin_FreeSurf option : * initialization (ini_psurf.F); * dump hFac fields (write_state.F); * avoid unnecessary re-computation (forward_step.F initialise_varia.F calc_surf_dr.F);
Preparing adjoint of Held-Suarez: - bugfix for storing in absence of CD code - adding EXACT_CONSERV to AD list - new routine ini_autodiff to add TAMC-specific initialisations - adding Shapiro filter to AD list
Bringing comments up to data and formatting for document extraction.
"Volume exact-Conservation" modified for non-linear free-surface + Crank-Nickelson
Include initialisation of gTracer fields to break dependency for TAF.
modified to incorporate NonLin-FreeSurf
Added diapycnal (diffkr) and isopycanl (kapgm) diffusion to set of control variables.
Added a few re-initialisations for TAF.
o Extracted core part of the_main_loop and re-created forward_step
N.B.: Time-dependent part of cost function should remain in
the_main_loop (or contributions must be stored)
o Added some parameter recomputations of nIter0
o Added grdchk package handling o Added passive tracer handling
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
See doc/tag-index and doc/notes_c37_adj.txt Preparation for stand-alone autodifferentiability.
Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
change Time-Average routine names (new package)
allow to restart from an older(<ckp35) pickup_file by removing a Commented CALL
recover (after checkpoint35) time average output
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Rescaling of forcing fields done immediately after reading fields.
Rearranged for packages routines; calls to packages_readparms initialise_fixed.F packages_init initialise_varia.F Tested for exp(0,2,4)
Inserted calls to GMREDI_init and KPP_init as part of packaging effort.
Restructered the calling tree between THE_MODEL_MAIN()
and DYNAMICS(). Two calling levels have been inserted
to better split the "fixed" initialization phase from
the main time-loop for easier connectivity with the adjoint
infrastructure.
The calling tree now looks like:
the_model_main:
initialise_fixed()
the_main_loop()
the_main_loop:
initialise_varia()
do i=1,nIters
forward_step()
enddo
forward_step()
forward_step:
load_external_fields()
dynamics()
do_the_model_io()
solve_for_pressure()
do_gterm_blocking_exchanges()
write_checkpoint()
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