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Bug fix for lower boundaries over topography of non-zero height. Thanks to CAE for spotting it.
Changed 2d intermediate fields to 3d to reduce TAMC storage.
Added store directives for TAMC. Tested for exp(0,2,4).
Split up loops and added store directives for TAMC compatibility. (P.H.)
Modifications to include TAMC directives, tape key computations and initialisations to make code TAMC compatible. Routines the_model_main.F and initialise_fixed.F are left unchanged for the moment. (P.H.)
Modifications/additions for KPP mixing scheme. Instigated by Dimitri.
Changes to allow for atmospheric integration builds of the code
Isomorphism consistency changes
Isomorphism consistency changes
E-implemented the theta* and salt* time-stepping scheme. We did this so that theta/salt/u/v would all be at the same time-level at the end of dynamics() to make I/O easier.
Added code to bring "salt" up-to-date with "theta". One caveat is that implicit diffusion of salt is done with the diffusivity of theta. We'll sort this out later. In explicit mode, diffKzS is used.
Changes to support topography, hydrography and forcing from files
Implemented implicit vertical diffusion (tracers only). Involved introducing a "total" diffusivity array (local 3D) calculated by calc_diffusivity(). Made some small changes to time-stepping algorithm. Switched on by setting implicitZdiffusion. (note: *Not* fully tested with topography. But when switched off this does produce identical results)
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