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revision 1.41 by heimbach, Wed Apr 18 19:54:06 2007 UTC revision 1.69 by jmc, Sun Aug 17 02:08:24 2008 UTC
# Line 36  C     == Global variables === Line 36  C     == Global variables ===
36  #include "SIZE.h"  #include "SIZE.h"
37  #include "EEPARAMS.h"  #include "EEPARAMS.h"
38  #include "PARAMS.h"  #include "PARAMS.h"
 #include "DYNVARS.h"  
39  #include "GRID.h"  #include "GRID.h"
40    #include "DYNVARS.h"
41  #ifdef ALLOW_TIMEAVE  #ifdef ALLOW_TIMEAVE
42  #include "TIMEAVE_STATV.h"  #include "TIMEAVE_STATV.h"
43  #endif  #endif
# Line 49  C     == Global variables === Line 49  C     == Global variables ===
49  # include "tamc.h"  # include "tamc.h"
50  # include "tamc_keys.h"  # include "tamc_keys.h"
51  # include "FFIELDS.h"  # include "FFIELDS.h"
52    # include "SURFACE.h"
53  # include "EOS.h"  # include "EOS.h"
54  # ifdef ALLOW_KPP  # ifdef ALLOW_KPP
55  #  include "KPP.h"  #  include "KPP.h"
# Line 59  C     == Global variables === Line 60  C     == Global variables ===
60  # ifdef ALLOW_EBM  # ifdef ALLOW_EBM
61  #  include "EBM.h"  #  include "EBM.h"
62  # endif  # endif
 # ifdef EXACT_CONSERV  
 #  include "SURFACE.h"  
 # endif  
63  # ifdef ALLOW_EXF  # ifdef ALLOW_EXF
64  #  include "ctrl.h"  #  include "ctrl.h"
65  #  include "EXF_FIELDS.h"  #  include "EXF_FIELDS.h"
# Line 85  C     myThid :: Thread number for this i Line 83  C     myThid :: Thread number for this i
83    
84  C     !LOCAL VARIABLES:  C     !LOCAL VARIABLES:
85  C     == Local variables  C     == Local variables
86  C     rhoK, rhoKM1  :: Density at current level, and level above  C     rhoK, rhoKm1  :: Density at current level, and level above
87  C     iMin, iMax    :: Ranges and sub-block indices on which calculations  C     iMin, iMax    :: Ranges and sub-block indices on which calculations
88  C     jMin, jMax       are applied.  C     jMin, jMax       are applied.
89  C     bi, bj        :: tile indices  C     bi, bj        :: tile indices
90  C     i,j,k         :: loop indices  C     i,j,k         :: loop indices
91        _RL rhokp1  (1-OLx:sNx+OLx,1-OLy:sNy+OLy)        _RL rhoKp1  (1-OLx:sNx+OLx,1-OLy:sNy+OLy)
92        _RL rhokm1  (1-OLx:sNx+OLx,1-OLy:sNy+OLy)        _RL rhoKm1  (1-OLx:sNx+OLx,1-OLy:sNy+OLy)
93        _RL rhok    (1-OLx:sNx+OLx,1-OLy:sNy+OLy)        _RL rhoK    (1-OLx:sNx+OLx,1-OLy:sNy+OLy)
94        _RL sigmaX  (1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)        _RL sigmaX  (1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)
95        _RL sigmaY  (1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)        _RL sigmaY  (1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)
96        _RL sigmaR  (1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)        _RL sigmaR  (1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)
# Line 105  C     i,j,k         :: loop indices Line 103  C     i,j,k         :: loop indices
103        LOGICAL  DIAGNOSTICS_IS_ON        LOGICAL  DIAGNOSTICS_IS_ON
104        EXTERNAL DIAGNOSTICS_IS_ON        EXTERNAL DIAGNOSTICS_IS_ON
105  #endif /* ALLOW_DIAGNOSTICS */  #endif /* ALLOW_DIAGNOSTICS */
106    #ifdef ALLOW_DOWN_SLOPE
107          _RL rhoInSitu(1-OLx:sNx+OLx,1-OLy:sNy+OLy,Nr)
108    #endif /* ALLOW_DOWN_SLOPE */
109    
110  CEOP  CEOP
111    
# Line 121  C--   dummy statement to end declaration Line 122  C--   dummy statement to end declaration
122        doDiagsRho = 0        doDiagsRho = 0
123  #ifdef ALLOW_DIAGNOSTICS  #ifdef ALLOW_DIAGNOSTICS
124        IF ( useDiagnostics .AND. fluidIsWater ) THEN        IF ( useDiagnostics .AND. fluidIsWater ) THEN
         IF ( DIAGNOSTICS_IS_ON('DRHODR  ',myThid) ) doDiagsRho = 1  
125          IF ( DIAGNOSTICS_IS_ON('RHOANOSQ',myThid) .OR.          IF ( DIAGNOSTICS_IS_ON('RHOANOSQ',myThid) .OR.
126       &       DIAGNOSTICS_IS_ON('URHOMASS',myThid) .OR.       &       DIAGNOSTICS_IS_ON('URHOMASS',myThid) .OR.
127       &       DIAGNOSTICS_IS_ON('VRHOMASS',myThid) .OR.       &       DIAGNOSTICS_IS_ON('VRHOMASS',myThid) .OR.
128       &       DIAGNOSTICS_IS_ON('WRHOMASS',myThid) .OR.       &       DIAGNOSTICS_IS_ON('WRHOMASS',myThid) .OR.
129       &       DIAGNOSTICS_IS_ON('WRHOMASS',myThid) ) doDiagsRho = 2       &       DIAGNOSTICS_IS_ON('WRHOMASS',myThid) ) doDiagsRho = 2
130            IF ( doDiagsRho.EQ.0 .AND.
131         &       DIAGNOSTICS_IS_ON('MXLDEPTH',myThid) ) doDiagsRho = 1
132            IF ( doDiagsRho.EQ.0 .AND.
133         &       DIAGNOSTICS_IS_ON('DRHODR  ',myThid) ) doDiagsRho = 1
134        ENDIF        ENDIF
135  #endif /* ALLOW_DIAGNOSTICS */  #endif /* ALLOW_DIAGNOSTICS */
136    
137    
138  #ifdef ALLOW_SEAICE  #ifdef ALLOW_SEAICE
 C--   Call sea ice model to compute forcing/external data fields.  In  
 C     addition to computing prognostic sea-ice variables and diagnosing the  
 C     forcing/external data fields that drive the ocean model, SEAICE_MODEL  
 C     also sets theta to the freezing point under sea-ice.  The implied  
 C     surface heat flux is then stored in variable surfaceTendencyTice,  
 C     which is needed by KPP package (kpp_calc.F and kpp_transport_t.F)  
 C     to diagnose surface buoyancy fluxes and for the non-local transport  
 C     term.  Because this call precedes model thermodynamics, temperature  
 C     under sea-ice may not be "exactly" at the freezing point by the time  
 C     theta is dumped or time-averaged.  
139        IF ( useSEAICE ) THEN        IF ( useSEAICE ) THEN
140  #ifdef ALLOW_AUTODIFF_TAMC  # ifdef ALLOW_AUTODIFF_TAMC
141    cph-adj-test(
142    CADJ STORE area,empmr,qsw,theta   = comlev1, key = ikey_dynamics
143    cph-adj-test)
144  CADJ STORE atemp,aqh,precip    = comlev1, key = ikey_dynamics  CADJ STORE atemp,aqh,precip    = comlev1, key = ikey_dynamics
145  CADJ STORE swdown,lwdown       = comlev1, key = ikey_dynamics  CADJ STORE swdown,lwdown       = comlev1, key = ikey_dynamics
 CADJ STORE theta               = comlev1, key = ikey_dynamics  
146  cph# ifdef EXF_READ_EVAP  cph# ifdef EXF_READ_EVAP
147  CADJ STORE evap                = comlev1, key = ikey_dynamics  CADJ STORE evap                = comlev1, key = ikey_dynamics
148  cph# endif  cph# endif
 cph# ifdef SEAICE_ALLOW_DYNAMICS  
149  CADJ STORE uvel,vvel           = comlev1, key = ikey_dynamics  CADJ STORE uvel,vvel           = comlev1, key = ikey_dynamics
150  cph# endif  #  ifdef SEAICE_ALLOW_DYNAMICS
151  # ifdef SEAICE_CGRID  CADJ STORE uice                = comlev1, key = ikey_dynamics
152  CADJ STORE fu, fv              = comlev1, key = ikey_dynamics  CADJ STORE vice                = comlev1, key = ikey_dynamics
153  CADJ STORE seaicemasku         = comlev1, key = ikey_dynamics  #   ifdef SEAICE_ALLOW_EVP
154  CADJ STORE seaicemaskv         = comlev1, key = ikey_dynamics  CADJ STORE seaice_sigma1       = comlev1, key = ikey_dynamics
155    CADJ STORE seaice_sigma2       = comlev1, key = ikey_dynamics
156    CADJ STORE seaice_sigma12      = comlev1, key = ikey_dynamics
157    #   endif
158    #  endif
159    #  ifdef SEAICE_SALINITY
160    CADJ STORE salt                = comlev1, key = ikey_dynamics
161    #  endif
162  #  ifdef ATMOSPHERIC_LOADING  #  ifdef ATMOSPHERIC_LOADING
163    CADJ STORE pload               = comlev1, key = ikey_dynamics
164  CADJ STORE siceload            = comlev1, key = ikey_dynamics  CADJ STORE siceload            = comlev1, key = ikey_dynamics
165  #  endif  #  endif
166    #  ifdef NONLIN_FRSURF
167    CADJ STORE recip_hfacc         = comlev1, key = ikey_dynamics
168    #  endif
169  # endif  # endif
170  #endif  # ifdef ALLOW_DEBUG
 #ifdef ALLOW_DEBUG  
171          IF ( debugLevel .GE. debLevB )          IF ( debugLevel .GE. debLevB )
172       &    CALL DEBUG_CALL('SEAICE_MODEL',myThid)       &    CALL DEBUG_CALL('SEAICE_MODEL',myThid)
173  #endif  # endif
174          CALL TIMER_START('SEAICE_MODEL    [DO_OCEANIC_PHYS]', myThid)          CALL TIMER_START('SEAICE_MODEL    [DO_OCEANIC_PHYS]', myThid)
175          CALL SEAICE_MODEL( myTime, myIter, myThid )          CALL SEAICE_MODEL( myTime, myIter, myThid )
176          CALL TIMER_STOP ('SEAICE_MODEL    [DO_OCEANIC_PHYS]', myThid)          CALL TIMER_STOP ('SEAICE_MODEL    [DO_OCEANIC_PHYS]', myThid)
177  #ifdef ALLOW_COST_ICE  # ifdef ALLOW_COST
178          CALL COST_ICE_TEST ( myTime, myIter, myThid )          CALL SEAICE_COST_SENSI ( myTime, myIter, myThid )
179  #endif  # endif
180        ENDIF        ENDIF
181  #endif /* ALLOW_SEAICE */  #endif /* ALLOW_SEAICE */
182    
183    #ifdef ALLOW_AUTODIFF_TAMC
184    CADJ STORE sst, sss           = comlev1, key = ikey_dynamics
185    CADJ STORE qsw                = comlev1, key = ikey_dynamics
186    # ifdef ALLOW_SEAICE
187    CADJ STORE area               = comlev1, key = ikey_dynamics
188    # endif
189    #endif
190    
191  #if (defined ALLOW_THSICE) && !(defined ALLOW_ATM2D)  #if (defined ALLOW_THSICE) && !(defined ALLOW_ATM2D)
192        IF ( useThSIce .AND. fluidIsWater ) THEN        IF ( useThSIce .AND. fluidIsWater ) THEN
193  #ifdef ALLOW_DEBUG  #ifdef ALLOW_DEBUG
# Line 194  C       and modify forcing terms includi Line 208  C       and modify forcing terms includi
208          IF ( debugLevel .GE. debLevB )          IF ( debugLevel .GE. debLevB )
209       &    CALL DEBUG_CALL('SHELFICE_THERMODYNAMICS',myThid)       &    CALL DEBUG_CALL('SHELFICE_THERMODYNAMICS',myThid)
210  #endif  #endif
211  C     compute temperature and (virtual) salt flux at the  C     compute temperature and (virtual) salt flux at the
212  C     shelf-ice ocean interface  C     shelf-ice ocean interface
213         CALL TIMER_START('SHELFICE_THERMODYNAMICS [DO_OCEANIC_PHYS]',         CALL TIMER_START('SHELFICE_THERMODYNAMICS [DO_OCEANIC_PHYS]',
214       &       myThid)       &       myThid)
# Line 255  CHPF$ INDEPENDENT Line 269  CHPF$ INDEPENDENT
269       &                      + act3*max1*max2       &                      + act3*max1*max2
270       &                      + act4*max1*max2*max3       &                      + act4*max1*max2*max3
271  #else  /* ALLOW_AUTODIFF_TAMC */  #else  /* ALLOW_AUTODIFF_TAMC */
272  C     if fluid is not water, by-pass find_rho, gmredi, surfaceForcing  C     if fluid is not water, by-pass find_rho, gmredi, surfaceForcing
273  C     and all vertical mixing schemes, but keep OBCS_CALC  C     and all vertical mixing schemes, but keep OBCS_CALC
274          IF ( fluidIsWater ) THEN          IF ( fluidIsWater ) THEN
275  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
# Line 266  C     just ensure that all memory refere Line 280  C     just ensure that all memory refere
280  C     point numbers. This prevents spurious hardware signals due to  C     point numbers. This prevents spurious hardware signals due to
281  C     uninitialised but inert locations.  C     uninitialised but inert locations.
282    
283    #ifdef ALLOW_AUTODIFF_TAMC
284          DO j=1-OLy,sNy+OLy          DO j=1-OLy,sNy+OLy
285           DO i=1-OLx,sNx+OLx           DO i=1-OLx,sNx+OLx
286            rhok   (i,j)   = 0. _d 0            rhoKm1 (i,j)   = 0. _d 0
287            rhoKM1 (i,j)   = 0. _d 0            rhoK   (i,j)   = 0. _d 0
288            rhoKP1 (i,j)   = 0. _d 0            rhoKp1 (i,j)   = 0. _d 0
289           ENDDO           ENDDO
290          ENDDO          ENDDO
291    #endif /* ALLOW_AUTODIFF_TAMC */
292    
293          DO k=1,Nr          DO k=1,Nr
294           DO j=1-OLy,sNy+OLy           DO j=1-OLy,sNy+OLy
295            DO i=1-OLx,sNx+OLx            DO i=1-OLx,sNx+OLx
296  C This is currently also used by IVDC and Diagnostics  C This is currently used by GMRedi, IVDC, MXL-depth  and Diagnostics
297             sigmaX(i,j,k) = 0. _d 0             sigmaX(i,j,k) = 0. _d 0
298             sigmaY(i,j,k) = 0. _d 0             sigmaY(i,j,k) = 0. _d 0
299             sigmaR(i,j,k) = 0. _d 0             sigmaR(i,j,k) = 0. _d 0
# Line 305  cph although some of these are re-initia Line 321  cph although some of these are re-initia
321             VisbeckK(i,j,bi,bj)   = 0. _d 0             VisbeckK(i,j,bi,bj)   = 0. _d 0
322  #  endif  #  endif
323  # endif /* ALLOW_GMREDI */  # endif /* ALLOW_GMREDI */
324    # ifdef ALLOW_KPP
325               KPPdiffKzS(i,j,k,bi,bj)  = 0. _d 0
326               KPPdiffKzT(i,j,k,bi,bj)  = 0. _d 0
327    # endif /* ALLOW_KPP */
328  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
329            ENDDO            ENDDO
330           ENDDO           ENDDO
# Line 337  C--     Start of diagnostic loop Line 357  C--     Start of diagnostic loop
357  #ifdef ALLOW_AUTODIFF_TAMC  #ifdef ALLOW_AUTODIFF_TAMC
358  C? Patrick, is this formula correct now that we change the loop range?  C? Patrick, is this formula correct now that we change the loop range?
359  C? Do we still need this?  C? Do we still need this?
360  cph kkey formula corrected.  cph kkey formula corrected.
361  cph Needed for rhok, rhokm1, in the case useGMREDI.  cph Needed for rhoK, rhoKm1, in the case useGMREDI.
362           kkey = (itdkey-1)*Nr + k           kkey = (itdkey-1)*Nr + k
363  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
364    
365    #ifdef ALLOW_DOWN_SLOPE
366              IF ( useDOWN_SLOPE ) THEN
367                CALL DWNSLP_CALC_RHO(
368         I                  theta, salt,
369         O                  rhoK, rhoInSitu,
370         I                  k, bi, bj, myTime, myIter, myThid )
371              ENDIF
372    #endif /* ALLOW_DOWN_SLOPE */
373    
374  C--       Calculate gradients of potential density for isoneutral  C--       Calculate gradients of potential density for isoneutral
375  C         slope terms (e.g. GM/Redi tensor or IVDC diffusivity)  C         slope terms (e.g. GM/Redi tensor or IVDC diffusivity)
376            IF ( useGMRedi .OR. (k.GT.1 .AND. ivdc_kappa.NE.0.)            IF ( useGMRedi .OR. (k.GT.1 .AND. ivdc_kappa.NE.0.)
377       &                   .OR. doDiagsRho.GE.1 ) THEN       &         .OR. useSALT_PLUME .OR. doDiagsRho.GE.1 ) THEN
378  #ifdef ALLOW_DEBUG  #ifdef ALLOW_DEBUG
379              IF ( debugLevel .GE. debLevB )              IF ( debugLevel .GE. debLevB )
380       &       CALL DEBUG_CALL('FIND_RHO',myThid)       &       CALL DEBUG_CALL('FIND_RHO_2D',myThid)
381  #endif  #endif
382                IF ( .NOT.useDOWN_SLOPE ) THEN
383  #ifdef ALLOW_AUTODIFF_TAMC  #ifdef ALLOW_AUTODIFF_TAMC
384  CADJ STORE theta(:,:,k,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte  CADJ STORE theta(:,:,k,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte
385  CADJ STORE salt (:,:,k,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte  CADJ STORE salt (:,:,k,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte
386  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
387              CALL FIND_RHO(               CALL FIND_RHO_2D(
388       I        bi, bj, iMin, iMax, jMin, jMax, k, k,       I                 iMin, iMax, jMin, jMax, k,
389       I        theta, salt,       I                 theta(1-OLx,1-OLy,k,bi,bj),
390       O        rhoK,       I                 salt (1-OLx,1-OLy,k,bi,bj),
391       I        myThid )       O                 rhoK,
392         I                 k, bi, bj, myThid )
393    
394                ENDIF
395              IF (k.GT.1) THEN              IF (k.GT.1) THEN
396  #ifdef ALLOW_AUTODIFF_TAMC  #ifdef ALLOW_AUTODIFF_TAMC
397  CADJ STORE theta(:,:,k-1,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte  CADJ STORE theta(:,:,k-1,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte
398  CADJ STORE salt (:,:,k-1,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte  CADJ STORE salt (:,:,k-1,bi,bj) = comlev1_bibj_k, key=kkey, byte=isbyte
399  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
400               CALL FIND_RHO(               CALL FIND_RHO_2D(
401       I        bi, bj, iMin, iMax, jMin, jMax, k-1, k,       I                 iMin, iMax, jMin, jMax, k,
402       I        theta, salt,       I                 theta(1-OLx,1-OLy,k-1,bi,bj),
403       O        rhoKm1,       I                 salt (1-OLx,1-OLy,k-1,bi,bj),
404       I        myThid )       O                 rhoKm1,
405         I                 k-1, bi, bj, myThid )
406              ENDIF              ENDIF
407  #ifdef ALLOW_DEBUG  #ifdef ALLOW_DEBUG
408              IF ( debugLevel .GE. debLevB )              IF ( debugLevel .GE. debLevB )
# Line 378  CADJ STORE salt (:,:,k-1,bi,bj) = comlev Line 411  CADJ STORE salt (:,:,k-1,bi,bj) = comlev
411  cph Avoid variable aliasing for adjoint !!!  cph Avoid variable aliasing for adjoint !!!
412              DO j=jMin,jMax              DO j=jMin,jMax
413               DO i=iMin,iMax               DO i=iMin,iMax
414                rhoKP1(i,j) = rhoK(i,j)                rhoKp1(i,j) = rhoK(i,j)
415               ENDDO               ENDDO
416              ENDDO              ENDDO
417              CALL GRAD_SIGMA(              CALL GRAD_SIGMA(
# Line 386  cph Avoid variable aliasing for adjoint Line 419  cph Avoid variable aliasing for adjoint
419       I             rhoK, rhoKm1, rhoKp1,       I             rhoK, rhoKm1, rhoKp1,
420       O             sigmaX, sigmaY, sigmaR,       O             sigmaX, sigmaY, sigmaR,
421       I             myThid )       I             myThid )
           ENDIF  
   
422  #ifdef ALLOW_AUTODIFF_TAMC  #ifdef ALLOW_AUTODIFF_TAMC
423  ctest# ifndef GM_EXCLUDE_CLIPPING  #ifdef GMREDI_WITH_STABLE_ADJOINT
424  CADJ STORE rhok   (:,:) = comlev1_bibj_k ,       key=kkey, byte=isbyte  cgf zero out adjoint fields to stabilize pkg/gmredi adjoint
425  ctest# endif  cgf -> cuts adjoint dependency from slope to state
426  CADJ STORE rhokm1 (:,:) = comlev1_bibj_k ,       key=kkey, byte=isbyte              CALL ZERO_ADJ_LOC( Nr, sigmaX, myThid)
427                CALL ZERO_ADJ_LOC( Nr, sigmaY, myThid)
428                CALL ZERO_ADJ_LOC( Nr, sigmaR, myThid)
429    #endif
430  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
431              ENDIF
432    
433  C--       Implicit Vertical Diffusion for Convection  C--       Implicit Vertical Diffusion for Convection
434  c ==> should use sigmaR !!!  c ==> should use sigmaR !!!
435            IF (k.GT.1 .AND. ivdc_kappa.NE.0.) THEN            IF (k.GT.1 .AND. ivdc_kappa.NE.0.) THEN
# Line 418  c ==> should use sigmaR !!! Line 454  c ==> should use sigmaR !!!
454  C--     end of diagnostic k loop (Nr:1)  C--     end of diagnostic k loop (Nr:1)
455          ENDDO          ENDDO
456    
457    #ifdef ALLOW_AUTODIFF_TAMC
458    CADJ STORE IVDConvCount(:,:,:,bi,bj)
459    CADJ &     = comlev1_bibj, key=itdkey, byte=isbyte
460    #endif
461    
462    C--     Diagnose Mixed Layer Depth:
463            IF ( useGMRedi .OR. doDiagsRho.GE.1 ) THEN
464              CALL CALC_OCE_MXLAYER( rhoK, sigmaR,
465         &              bi, bj, myTime, myIter, myThid )
466            ENDIF
467    
468    #ifdef ALLOW_SALT_PLUME
469            IF ( useSALT_PLUME ) THEN
470              CALL SALT_PLUME_CALC_DEPTH( rhoK, sigmaR,
471         &              bi, bj, myTime, myIter, myThid )
472            ENDIF
473    #endif /* ALLOW_SALT_PLUME */
474    
475  #ifdef ALLOW_DIAGNOSTICS  #ifdef ALLOW_DIAGNOSTICS
476          IF ( doDiagsRho.GE.1 ) THEN          IF ( doDiagsRho.GE.1 ) THEN
477            CALL DIAGNOSTICS_FILL (sigmaR, 'DRHODR  ', 0, Nr,            CALL DIAGNOSTICS_FILL (sigmaR, 'DRHODR  ', 0, Nr,
478       &         2, bi, bj, myThid)       &         2, bi, bj, myThid)
479          ENDIF          ENDIF
480  #endif  #endif /* ALLOW_DIAGNOSTICS */
481    
482  C--     Determines forcing terms based on external fields  C--     Determines forcing terms based on external fields
483  C       relaxation terms, etc.  C       relaxation terms, etc.
# Line 470  CADJ STORE surfaceForcingTice(:,:,bi,bj) Line 524  CADJ STORE surfaceForcingTice(:,:,bi,bj)
524  CADJ &     = comlev1_bibj, key=itdkey, byte=isbyte  CADJ &     = comlev1_bibj, key=itdkey, byte=isbyte
525  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
526    
 #ifdef  ALLOW_GMREDI  
   
 #ifdef ALLOW_AUTODIFF_TAMC  
 # ifndef GM_EXCLUDE_CLIPPING  
 cph storing here is needed only for one GMREDI_OPTIONS:  
 cph define GM_BOLUS_ADVEC  
 cph keep it although TAF says you dont need to.  
 cph but I've avoided the #ifdef for now, in case more things change  
 CADJ STORE sigmaX(:,:,:)        = comlev1_bibj, key=itdkey, byte=isbyte  
 CADJ STORE sigmaY(:,:,:)        = comlev1_bibj, key=itdkey, byte=isbyte  
 CADJ STORE sigmaR(:,:,:)        = comlev1_bibj, key=itdkey, byte=isbyte  
 # endif  
 #endif /* ALLOW_AUTODIFF_TAMC */  
   
 C--     Calculate iso-neutral slopes for the GM/Redi parameterisation  
         IF (useGMRedi) THEN  
 #ifdef ALLOW_DEBUG  
           IF ( debugLevel .GE. debLevB )  
      &     CALL DEBUG_CALL('GMREDI_CALC_TENSOR',myThid)  
 #endif  
           CALL GMREDI_CALC_TENSOR(  
      I             bi, bj, iMin, iMax, jMin, jMax,  
      I             sigmaX, sigmaY, sigmaR,  
      I             myThid )  
 #ifdef ALLOW_AUTODIFF_TAMC  
         ELSE  
           CALL GMREDI_CALC_TENSOR_DUMMY(  
      I             bi, bj, iMin, iMax, jMin, jMax,  
      I             sigmaX, sigmaY, sigmaR,  
      I             myThid )  
 #endif /* ALLOW_AUTODIFF_TAMC */  
         ENDIF  
   
 #endif  /* ALLOW_GMREDI */  
   
527  #ifdef  ALLOW_KPP  #ifdef  ALLOW_KPP
528  C--     Compute KPP mixing coefficients  C--     Compute KPP mixing coefficients
529          IF (useKPP) THEN          IF (useKPP) THEN
# Line 513  C--     Compute KPP mixing coefficients Line 532  C--     Compute KPP mixing coefficients
532       &     CALL DEBUG_CALL('KPP_CALC',myThid)       &     CALL DEBUG_CALL('KPP_CALC',myThid)
533  #endif  #endif
534            CALL KPP_CALC(            CALL KPP_CALC(
535       I                  bi, bj, myTime, myThid )       I                  bi, bj, myTime, myIter, myThid )
536  #ifdef ALLOW_AUTODIFF_TAMC  #ifdef ALLOW_AUTODIFF_TAMC
537          ELSE          ELSE
538            CALL KPP_CALC_DUMMY(            CALL KPP_CALC_DUMMY(
539       I                  bi, bj, myTime, myThid )       I                  bi, bj, myTime, myIter, myThid )
540  #endif /* ALLOW_AUTODIFF_TAMC */  #endif /* ALLOW_AUTODIFF_TAMC */
541          ENDIF          ENDIF
542    
# Line 569  C--     Compute GGL90 mixing coefficient Line 588  C--     Compute GGL90 mixing coefficient
588          ENDIF          ENDIF
589  #endif /* ALLOW_TIMEAVE */  #endif /* ALLOW_TIMEAVE */
590    
591    #ifdef ALLOW_GMREDI
592    #ifdef ALLOW_AUTODIFF_TAMC
593    # ifndef GM_EXCLUDE_CLIPPING
594    cph storing here is needed only for one GMREDI_OPTIONS:
595    cph define GM_BOLUS_ADVEC
596    cph keep it although TAF says you dont need to.
597    cph but I've avoided the #ifdef for now, in case more things change
598    CADJ STORE sigmaX(:,:,:)        = comlev1_bibj, key=itdkey, byte=isbyte
599    CADJ STORE sigmaY(:,:,:)        = comlev1_bibj, key=itdkey, byte=isbyte
600    CADJ STORE sigmaR(:,:,:)        = comlev1_bibj, key=itdkey, byte=isbyte
601    # endif
602    #endif /* ALLOW_AUTODIFF_TAMC */
603    
604    C--     Calculate iso-neutral slopes for the GM/Redi parameterisation
605            IF (useGMRedi) THEN
606    #ifdef ALLOW_DEBUG
607              IF ( debugLevel .GE. debLevB )
608         &     CALL DEBUG_CALL('GMREDI_CALC_TENSOR',myThid)
609    #endif
610              CALL GMREDI_CALC_TENSOR(
611         I             iMin, iMax, jMin, jMax,
612         I             sigmaX, sigmaY, sigmaR,
613         I             bi, bj, myTime, myIter, myThid )
614    #ifdef ALLOW_AUTODIFF_TAMC
615            ELSE
616              CALL GMREDI_CALC_TENSOR_DUMMY(
617         I             iMin, iMax, jMin, jMax,
618         I             sigmaX, sigmaY, sigmaR,
619         I             bi, bj, myTime, myIter, myThid )
620    #endif /* ALLOW_AUTODIFF_TAMC */
621            ENDIF
622    #endif /* ALLOW_GMREDI */
623    
624    #ifdef ALLOW_DOWN_SLOPE
625            IF ( useDOWN_SLOPE ) THEN
626    C--     Calculate Downsloping Flow for Down_Slope parameterization
627             IF ( usingPCoords ) THEN
628              CALL DWNSLP_CALC_FLOW(
629         I                bi, bj, kSurfC,
630         I                rhoInSitu,
631         I                myTime, myIter, myThid )
632             ELSE
633              CALL DWNSLP_CALC_FLOW(
634         I                bi, bj, kLowC,
635         I                rhoInSitu,
636         I                myTime, myIter, myThid )
637             ENDIF
638            ENDIF
639    #endif /* ALLOW_DOWN_SLOPE */
640    
641  #ifndef ALLOW_AUTODIFF_TAMC  #ifndef ALLOW_AUTODIFF_TAMC
642  C---  if fluid Is Water: end  C---  if fluid Is Water: end
643          ENDIF          ENDIF
# Line 591  C--   end bi,bj loops. Line 660  C--   end bi,bj loops.
660         ENDDO         ENDDO
661        ENDDO        ENDDO
662    
663    #ifdef  ALLOW_KPP
664          IF (useKPP) THEN
665            CALL KPP_DO_EXCH( myThid )
666          ENDIF
667    #endif  /* ALLOW_KPP */
668    
669  #ifdef ALLOW_DIAGNOSTICS  #ifdef ALLOW_DIAGNOSTICS
670        IF ( fluidIsWater .AND. useDiagnostics ) THEN        IF ( fluidIsWater .AND. useDiagnostics ) THEN
671          CALL DIAGS_OCEANIC_SURF_FLUX( myTime, myIter, myThid )          CALL DIAGS_OCEANIC_SURF_FLUX( myTime, myIter, myThid )
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