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o fix name error: "monitor_mdsio" --> "monitor_stdio" - add "monitor_grid" output for ini_cori.F,ini_parms.F
o overhaul of IO so that we now have flags for MDSIO and/or MNC
- all verification tests compile and run with linux_ia32_g77
- defaults are compatible with current input files--nothing
should change if you were not previously using MNC
- MNC output has been added in numerous places (eg. timeave)
but there are still a few writes not yet do-able with MNC
(this is in progress)
- flags now allow for either/or/both use of MDSIO and MNC and
documentation will soon follow
- numerous small formatting cleanups for ProTeX
o make the mon_iotype setup in monitor the poster child for MNC/MDSIO flag handling
print out no_slip_bottom flag
Only update cg2d preconditioner every "cg2dPreCondFreq" iter. (default=1)
needs valid U,V in halo region for multi-Dim-Advec; do Exch(U,V) if staggerTimeStep
merged cylindrical coord configuration and rotating_tank exp
Added new flag to fix aim.5l_cs - useJamartMomAdv distingiushes the non-linear terms from linear Coriolis when using Jamart wet points
Added vertical diffusivity profile (T/S) due to Bryan and Lewis, 1979. New parameters: diffKrBL79surf - surface diffusivity diffKrBL79deep - deep diffusivity diffKrBL79Ho - turning depth for arctan function diffKrBL79scl - depth scale for arctan function This diffusivity is added to all other diffusivities. The defaults are set so as to give zero diffusivity.
Added Sadourny discretization of Coriolis in V.I. mode - moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h - re-enabled use of omega3 in mom_vecinv.F
Added variable viscosity for the vector invariant equations based on Leith, 1968, Phys. Fluids (10) 1409-1416 - the use of the variable viscosty in the no-slip boundary conditions has not been implemented (but should be) - new parameters viscC2leith and viscC4leith are non-dimensional - I decided to modulate the variable viscosuty with the same viscAhMax and viscA4max; ideally we should have another maximum based on dx^2/dt etc.
Added new grid-dependent viscosity and biharmonic dissipation terms: o new parameters = viscAhGrid, viscAhMax, viscA4Grid and viscA4Max o new stuff in mom_vi_hdissip.F which is bound to break the adjoint!!!! This has been "verified" against old experiments **BUT** there is a known issue involving exch2 - results are dependent on using exch1 or exch2 and we don't know which is right (if either).
add run-time parameters for implicit vertical advection.
fix typo error.
delp,delz viscAz,viscAp ... are only local variables (and no longer in a common bloc).
* reverse gravitySign back to "logical" value: +1 when R increases downward * add a parameter to apply surface relaxation only in a latitude band
specific volume (atmospheric geopotential) includes water vapor effect
new flag "useCDscheme" (default=F);
set the Earth rotation either directly (omega) or from the rotation period
minor cleaning.
first step in r* implementation: add param "select_rStar"
* allows a more accurate definition of Ro_Surf (selectFindRoSurf=1) when using P-coordinate; only implemented for atmospheric config.
Fixed inconsistent arguments that show up using run-time checking with IFC. - fool_the_compiler() called with an argument more often than not! - config_summary() was use vector I/O for scalars. To make model work with run-time checking in general you will need to not enable it for mdsio_byteswap_r?.F also.
o cleaned up the use of rhoNil and rhoConst.
- rhoNil should only appear in the LINEAR equation of state, everywhere
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst
and the dynamical equations are all divided by rhoConst
o introduced new parameter rhoConstFresh, a reference density of fresh
water, to remove the fresh water flux's dependence on rhoNil. The default
value is 999.8 kg/m^3
o cleanup up external_forcing.F and external_forcing_surf.F
- can now be used by both OCEANIC and OCEANICP
o Added new equation of state -> JMD95Z and JMD95P - EOS of Jackett and McDougall, 1995, JPO - moved all EOS parameters into EOS.h - new routines ini_eos.F, store_pressure.F o Added UNESCO EOS, but not recommended because it requires in-situ temperature (see JMD95) o Modified formatting for knudsen2.f in utils/knudsen2 and added unesco.f to be used with POLY3
Add new flags: * T,S forcing outside Adams-Bashforh * temp,salt Advection and Forcing (turn on/off) * for each tracer: internal flag for multiDimAdvection & A-B
o define cell Center vertical spacing and then put Interface at the middle
add parameters to use real fresh water flux (replace USE_NATURALBCS option) with non-linear free-surface.
Bringing comments up to data and formatting for document extraction.
use gBaro instead of gravity to allow External mode reduced gravity test
remove printing of gBaro (no longer used)
add 2 parameters to define a Crank-Nickelson barotropic time-stepping
o Added printing of key grid variables in config_summary.F and removed write(0,*) output of these variables in ini_spherical_polar_grid.F o Added two new routines to do consistently formatted output of lines of constant X or Y for an XY variable. New routines are in read_write.F
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Removed GM/Redi parameters as part of packaging process.
Modifications to include TAMC directives, tape key computations and initialisations to make code TAMC compatible. Routines the_model_main.F and initialise_fixed.F are left unchanged for the moment. (P.H.)
Changed some erroneous declarations of myCurrentTime (sometimes myTime) from REAL to _RL. This probably was caught before because most people are using -r8 compile option in conjuction with REAL4_IS_SLOW which converts everything to real*8. Spotted by C.E.
Modifications for non-hydrostatic ability + updates for open-boundaries.
Added IMPLICIT NONE in a lot of subroutines. Also corrected the recip_Rhonil bug: we didn't set it in ini_parms.F
Changes to allow for atmospheric integration builds of the code
Changes to support - g77 compilation under Linux - LR(1) form of 64-bit is D or E for constants - Modified adjoint of exch with adjoint variables acuumulated.
Consistent isomorphism changes
Consistent isomorphism changes
Consistent isomorphism changes
Isomorphism consistency changes
Added print of deltaTclock - the model clock
Minor changes to correct bugs with multi-process mode of operation
Added flags for turning off momentum equation and/or temperature equation
Added extra IO features - runtime on/off flags - more reporting of configuration
Added changes to support implicit free-surface. - included gBaro a "barotropic" gravity that can be set differently to the g.rhoprime gravity. - discovered and fixed coding error in dynamics loop. Per tile temporaries that needed correct initial values were not being reset for each tile.
Added support for binary IO of model fields for restart and/or postprocessing
Further changes to reporting of model configuration on standard output
Improvements to I/O and feedback info.
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Further $Id to $Header conversions
Initial revision
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