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Bringing comments up to data and formatting for document extraction.
Re-arranged sequence of operations for Adams-Bashforth o this does not change numbers o this makes it very easy to extract forcing/diffusion out of ABII by changing calling sequence in calc_gt, calc_gs,... Key modifications: o new s/r: ADAMS_BASHFORTH2 gT=3/2*gT-1/2*gTnm1 o changed TIMESTEP_TRACER from gTnm1=t+dt*(3/2*gT-1/2*gTnm1) to gT=T+dt*gT o changed CALC_GT,CALC_GS & CALC_GTR1 to calcuate "gT" defined by new timestep_tracer (ie. including forcing, ABII, N-L F-S, etc...) now calls ADAMS_BASHFORTH2 and FREESURF_RESCALE_G o changed CYCLE_TRACER appropriately T=gT only Other associated mods: o new s/r: FREESURF_RESCALE_G applies non-linear free-surface term this used to be in TIMESTEP_TRACER o added myIter as argument to CALC_GS,CALC_GT,CALC_GTR1
Moved calc_gt.F, calc_gs.F and calc_gtr1.F to model/src from pkg/generic_advdiff
Tracer tendency routines are replaced by those in pkg/generic_advdiff/.
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
Applied same fix for DEC in both calc_gs and calc_gt. Keeping these to routines close together will make it easier to replace them with a generic routine later.
Another change to handle references to undefined array elements
More references to unset array element fixes
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Change variable name useKPP, useGMRedi.
Moved all terms associated with KPP and GM/Redi to separate routines in respective packages. Terms are included through calls to these routines.
Included initialisations required for TAMC compatibility.
Added bi-harmonic diffusion to calc_gs (Salt) and calc_gt (Temperature).
Modifications/additions for KPP mixing scheme. Instigated by Dimitri.
Changes to allow for atmospheric integration builds of the code
Partial changes to incoporate atmospheric configuration Minor TAMC compliance changes Included one-layer verification experiment exp0
Changes to support - g77 compilation under Linux - LR(1) form of 64-bit is D or E for constants - Modified adjoint of exch with adjoint variables acuumulated.
Isomorphism consistency changes
Consistent isomorphism changes
Changes to support r as a vertical coordinate
After great excitement and confusion we discovered that we didn't have a bug or sign error in the E-P flux. However, we did think it prudent to use a better name for it. EmPpR is now EmPmR and it really is E-P-R!
Various changes including time-dependant forcing: o logic for controlling external forcing fields now allows for time-dependant forcing: load_external_fields.F o genmake.dec needed a special line for the above file. o theta* and salt* time-stepping algorithm were re-implemented. The 4x4 global configuration has been "double-checked" against CNH's version. However, we do not assume any responsibility for the correctness of this code ... 8-)
Introduced time-dependant forcing, loaded and interpolated in load_external_fields.F in a subroutine load_interpolate_forcing(). Control is by one logical and two real variables in PARAMS.h: periodicExternalForcing, externForcingCycle and externForcingPeriod. The code in load_external_fields.F is "customized" so needs to be edited for non-global type runs. We'll tidy it up later.
Fairly coplete 4 degree global intercomparison setup. Includes changes to make convective adjustment and hydrostatic pressure correct as well as IO for climatological datasets
Added code to bring "salt" up-to-date with "theta". One caveat is that implicit diffusion of salt is done with the diffusivity of theta. We'll sort this out later. In explicit mode, diffKzS is used.
Further memory saving macros for particular grids
Further memory saving changes for oarticular grids
Further memory saving macros for particular grids
Further memory saving macros for particular grids
Further $Id to $Header conversions
Initial revision
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