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Change variable name useKPP, useGMRedi.
Moved explicit contributions from GM/Redi and KPP to diffusivity to called routines.
Added IVDC (Implicit Vertical Diffusion Convection). Also facilitated a "convection counter" that is output through "diags".
Modifications/additions for KPP mixing scheme. Instigated by Dimitri.
Changes to allow for atmospheric integration builds of the code
Isomorphism consistency changes
Changes to support r as a vertical coordinate
Added code to bring "salt" up-to-date with "theta". One caveat is that implicit diffusion of salt is done with the diffusivity of theta. We'll sort this out later. In explicit mode, diffKzS is used.
Fixed problems with _RS -> REAL*4 and with reading in intial hydrography
Changes to support topography, hydrography and forcing from files
Implemented implicit vertical diffusion (tracers only). Involved introducing a "total" diffusivity array (local 3D) calculated by calc_diffusivity(). Made some small changes to time-stepping algorithm. Switched on by setting implicitZdiffusion. (note: *Not* fully tested with topography. But when switched off this does produce identical results)
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