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Updating ecco-branch-mod1 to checkpoint44. Will be tagged ecco-branch-mod2.
More comments up to date and formatted for document extraction of "prototypes".
Change name and definition of k_surf (now ksurfC) add ksurfW,ksurfS and others 2D arrays for NonLin-FreeSurf
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
contains variables related to the surface position (fixed or time dependent)
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