/[MITgcm]/MITgcm/model/inc/PARAMS.h
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revision 1.258 by heimbach, Sat Feb 4 00:56:23 2012 UTC revision 1.269 by jmc, Mon May 6 23:01:50 2013 UTC
# Line 64  C     viscA4Zfile     :: File containing Line 64  C     viscA4Zfile     :: File containing
64  C     zonalWindFile   :: File containing zonal wind data  C     zonalWindFile   :: File containing zonal wind data
65  C     meridWindFile   :: File containing meridional wind data  C     meridWindFile   :: File containing meridional wind data
66  C     thetaClimFile   :: File containing surface theta climataology used  C     thetaClimFile   :: File containing surface theta climataology used
67  C                       in relaxation term -lambda(theta-theta*)  C                        in relaxation term -lambda(theta-theta*)
68  C     saltClimFile    :: File containing surface salt climataology used  C     saltClimFile    :: File containing surface salt climataology used
69  C                       in relaxation term -lambda(salt-salt*)  C                        in relaxation term -lambda(salt-salt*)
70  C     surfQfile       :: File containing surface heat flux, excluding SW  C     surfQfile       :: File containing surface heat flux, excluding SW
71  C                        (old version, kept for backward compatibility)  C                        (old version, kept for backward compatibility)
72  C     surfQnetFile    :: File containing surface net heat flux  C     surfQnetFile    :: File containing surface net heat flux
73  C     surfQswFile     :: File containing surface shortwave radiation  C     surfQswFile     :: File containing surface shortwave radiation
 C     dQdTfile        :: File containing thermal relaxation coefficient  
74  C     EmPmRfile       :: File containing surface fresh water flux  C     EmPmRfile       :: File containing surface fresh water flux
75  C           NOTE: for backward compatibility EmPmRfile is specified in  C           NOTE: for backward compatibility EmPmRfile is specified in
76  C                 m/s when using external_fields_load.F.  It is converted  C                 m/s when using external_fields_load.F.  It is converted
77  C                 to kg/m2/s by multiplying by rhoConstFresh.  C                 to kg/m2/s by multiplying by rhoConstFresh.
78  C     saltFluxFile    :: File containing surface salt flux  C     saltFluxFile    :: File containing surface salt flux
79  C     pLoadFile       :: File containing pressure loading  C     pLoadFile       :: File containing pressure loading
80    C     addMassFile     :: File containing source/sink of fluid in the interior
81  C     eddyPsiXFile    :: File containing zonal Eddy streamfunction data  C     eddyPsiXFile    :: File containing zonal Eddy streamfunction data
82  C     eddyPsiYFile    :: File containing meridional Eddy streamfunction data  C     eddyPsiYFile    :: File containing meridional Eddy streamfunction data
83  C     the_run_name    :: string identifying the name of the model "run"  C     the_run_name    :: string identifying the name of the model "run"
# Line 97  C     the_run_name    :: string identify Line 97  C     the_run_name    :: string identify
97       &                surfQfile, surfQnetFile, surfQswFile,       &                surfQfile, surfQnetFile, surfQswFile,
98       &                lambdaThetaFile, lambdaSaltFile,       &                lambdaThetaFile, lambdaSaltFile,
99       &                uVelInitFile, vVelInitFile, pSurfInitFile,       &                uVelInitFile, vVelInitFile, pSurfInitFile,
100       &                dQdTfile, ploadFile,       &                pLoadFile, addMassFile,
101       &                eddyPsiXFile, eddyPsiYFile,       &                eddyPsiXFile, eddyPsiYFile,
102       &                the_run_name       &                the_run_name
103        CHARACTER*(MAX_LEN_FNAM) buoyancyRelation        CHARACTER*(MAX_LEN_FNAM) buoyancyRelation
# Line 133  C     the_run_name    :: string identify Line 133  C     the_run_name    :: string identify
133        CHARACTER*(MAX_LEN_FNAM) uVelInitFile        CHARACTER*(MAX_LEN_FNAM) uVelInitFile
134        CHARACTER*(MAX_LEN_FNAM) vVelInitFile        CHARACTER*(MAX_LEN_FNAM) vVelInitFile
135        CHARACTER*(MAX_LEN_FNAM) pSurfInitFile        CHARACTER*(MAX_LEN_FNAM) pSurfInitFile
136        CHARACTER*(MAX_LEN_FNAM) dQdTfile        CHARACTER*(MAX_LEN_FNAM) pLoadFile
137        CHARACTER*(MAX_LEN_FNAM) ploadFile        CHARACTER*(MAX_LEN_FNAM) addMassFile
138        CHARACTER*(MAX_LEN_FNAM) eddyPsiXFile        CHARACTER*(MAX_LEN_FNAM) eddyPsiXFile
139        CHARACTER*(MAX_LEN_FNAM) eddyPsiYFile        CHARACTER*(MAX_LEN_FNAM) eddyPsiYFile
140        CHARACTER*(MAX_LEN_FNAM) lambdaThetaFile        CHARACTER*(MAX_LEN_FNAM) lambdaThetaFile
# Line 143  C     the_run_name    :: string identify Line 143  C     the_run_name    :: string identify
143    
144  C--   COMMON /PARM_I/ Integer valued parameters used by the model.  C--   COMMON /PARM_I/ Integer valued parameters used by the model.
145  C     cg2dMaxIters        :: Maximum number of iterations in the  C     cg2dMaxIters        :: Maximum number of iterations in the
146  C                           two-dimensional con. grad solver.  C                            two-dimensional con. grad solver.
147  C     cg2dChkResFreq      :: Frequency with which to check residual  C     cg2dChkResFreq      :: Frequency with which to check residual
148  C                           in con. grad solver.  C                            in con. grad solver.
149  C     cg2dPreCondFreq     :: Frequency for updating cg2d preconditioner  C     cg2dPreCondFreq     :: Frequency for updating cg2d preconditioner
150  C                            (non-linear free-surf.)  C                            (non-linear free-surf.)
151    C     cg2dUseMinResSol    :: =0 : use last-iteration/converged solution
152    C                            =1 : use solver minimum-residual solution
153  C     cg3dMaxIters        :: Maximum number of iterations in the  C     cg3dMaxIters        :: Maximum number of iterations in the
154  C                           three-dimensional con. grad solver.  C                            three-dimensional con. grad solver.
155  C     cg3dChkResFreq      :: Frequency with which to check residual  C     cg3dChkResFreq      :: Frequency with which to check residual
156  C                           in con. grad solver.  C                            in con. grad solver.
157  C     printResidualFreq   :: Frequency for printing residual in CG iterations  C     printResidualFreq   :: Frequency for printing residual in CG iterations
158  C     nIter0              :: Start time-step number of for this run  C     nIter0              :: Start time-step number of for this run
159  C     nTimeSteps          :: Number of timesteps to execute  C     nTimeSteps          :: Number of timesteps to execute
# Line 174  C     selectAddFluid      :: option to a Line 176  C     selectAddFluid      :: option to a
176  C                            (3-D generalisation of oceanic real-fresh water flux)  C                            (3-D generalisation of oceanic real-fresh water flux)
177  C                           =0 off ; =1 add fluid ; =-1 virtual flux (no mass added)  C                           =0 off ; =1 add fluid ; =-1 virtual flux (no mass added)
178  C     momForcingOutAB     :: =1: take momentum forcing contribution  C     momForcingOutAB     :: =1: take momentum forcing contribution
179  C                           out of (=0: in) Adams-Bashforth time stepping.  C                            out of (=0: in) Adams-Bashforth time stepping.
180  C     tracForcingOutAB    :: =1: take tracer (Temp,Salt,pTracers) forcing contribution  C     tracForcingOutAB    :: =1: take tracer (Temp,Salt,pTracers) forcing contribution
181  C                           out of (=0: in) Adams-Bashforth time stepping.  C                            out of (=0: in) Adams-Bashforth time stepping.
182  C     tempAdvScheme       :: Temp. Horiz.Advection scheme selector  C     tempAdvScheme       :: Temp. Horiz.Advection scheme selector
183  C     tempVertAdvScheme   :: Temp. Vert. Advection scheme selector  C     tempVertAdvScheme   :: Temp. Vert. Advection scheme selector
184  C     saltAdvScheme       :: Salt. Horiz.advection scheme selector  C     saltAdvScheme       :: Salt. Horiz.advection scheme selector
# Line 189  C-    debugLevel          :: controls pr Line 191  C-    debugLevel          :: controls pr
191  C                            and statistics ; higher -> more writing  C                            and statistics ; higher -> more writing
192    
193        COMMON /PARM_I/        COMMON /PARM_I/
194       &        cg2dMaxIters, cg2dChkResFreq, cg2dPreCondFreq,       &        cg2dMaxIters, cg2dChkResFreq,
195         &        cg2dPreCondFreq, cg2dUseMinResSol,
196       &        cg3dMaxIters, cg3dChkResFreq,       &        cg3dMaxIters, cg3dChkResFreq,
197       &        printResidualFreq,       &        printResidualFreq,
198       &        nIter0, nTimeSteps, nEndIter,       &        nIter0, nTimeSteps, nEndIter,
# Line 208  C                            and statist Line 211  C                            and statist
211        INTEGER cg2dMaxIters        INTEGER cg2dMaxIters
212        INTEGER cg2dChkResFreq        INTEGER cg2dChkResFreq
213        INTEGER cg2dPreCondFreq        INTEGER cg2dPreCondFreq
214          INTEGER cg2dUseMinResSol
215        INTEGER cg3dMaxIters        INTEGER cg3dMaxIters
216        INTEGER cg3dChkResFreq        INTEGER cg3dChkResFreq
217        INTEGER printResidualFreq        INTEGER printResidualFreq
# Line 234  C                            and statist Line 238  C                            and statist
238  C--   COMMON /PARM_L/ Logical valued parameters used by the model.  C--   COMMON /PARM_L/ Logical valued parameters used by the model.
239  C- Coordinate + Grid params:  C- Coordinate + Grid params:
240  C     fluidIsAir       :: Set to indicate that the fluid major constituent  C     fluidIsAir       :: Set to indicate that the fluid major constituent
241  C                        is air  C                         is air
242  C     fluidIsWater     :: Set to indicate that the fluid major constituent  C     fluidIsWater     :: Set to indicate that the fluid major constituent
243  C                        is water  C                         is water
244  C     usingPCoords     :: Set to indicate that we are working in a pressure  C     usingPCoords     :: Set to indicate that we are working in a pressure
245  C                        type coordinate (p or p*).  C                         type coordinate (p or p*).
246  C     usingZCoords     :: Set to indicate that we are working in a height  C     usingZCoords     :: Set to indicate that we are working in a height
247  C                        type coordinate (z or z*)  C                         type coordinate (z or z*)
248  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)
249  C                         this requires specific code for restart & exchange  C                         this requires specific code for restart & exchange
250  C     usingCartesianGrid :: If TRUE grid generation will be in a cartesian  C     usingCartesianGrid :: If TRUE grid generation will be in a cartesian
251  C                          coordinate frame.  C                           coordinate frame.
252  C     usingSphericalPolarGrid :: If TRUE grid generation will be in a  C     usingSphericalPolarGrid :: If TRUE grid generation will be in a
253  C                               spherical polar frame.  C                                spherical polar frame.
254  C     rotateGrid      :: rotate grid coordinates to geographical coordinates  C     rotateGrid      :: rotate grid coordinates to geographical coordinates
255  C                        according to Euler angles phiEuler, thetaEuler, psiEuler  C                        according to Euler angles phiEuler, thetaEuler, psiEuler
 C     usingCurvilinearGrid :: If TRUE, use a curvilinear grid (to be provided)  
256  C     usingCylindricalGrid :: If TRUE grid generation will be Cylindrical  C     usingCylindricalGrid :: If TRUE grid generation will be Cylindrical
257    C     usingCurvilinearGrid :: If TRUE, use a curvilinear grid (to be provided)
258    C     hasWetCSCorners :: domain contains CS-type corners where dynamics is solved
259  C     deepAtmosphere :: deep model (drop the shallow-atmosphere approximation)  C     deepAtmosphere :: deep model (drop the shallow-atmosphere approximation)
260  C     setInterFDr    :: set Interface depth (put cell-Center at the middle)  C     setInterFDr    :: set Interface depth (put cell-Center at the middle)
261  C     setCenterDr    :: set cell-Center depth (put Interface at the middle)  C     setCenterDr    :: set cell-Center depth (put Interface at the middle)
# Line 284  C     upwindShear        :: use 1rst ord Line 289  C     upwindShear        :: use 1rst ord
289  C     momStepping    :: Turns momentum equation time-stepping off  C     momStepping    :: Turns momentum equation time-stepping off
290  C     calc_wVelocity :: Turns of vertical velocity calculation off  C     calc_wVelocity :: Turns of vertical velocity calculation off
291  C- Temp. & Salt params:  C- Temp. & Salt params:
292  C     tempStepping   :: Turns temperature equation time-stepping off  C     tempStepping   :: Turns temperature equation time-stepping on/off
293  C     saltStepping   :: Turns salinity equation time-stepping off  C     saltStepping   :: Turns salinity equation time-stepping on/off
294    C     addFrictionHeating :: account for frictional heating
295  C     tempAdvection  :: Flag which turns advection of temperature on and off.  C     tempAdvection  :: Flag which turns advection of temperature on and off.
296    C     tempVertDiff4  :: use vertical bi-harmonic diffusion for temperature
297  C     tempIsActiveTr :: Pot.Temp. is a dynamically active tracer  C     tempIsActiveTr :: Pot.Temp. is a dynamically active tracer
298  C     tempForcing    :: Flag which turns external forcing of temperature on  C     tempForcing    :: Flag which turns external forcing of temperature on/off
 C                       and off.  
299  C     saltAdvection  :: Flag which turns advection of salinity on and off.  C     saltAdvection  :: Flag which turns advection of salinity on and off.
300    C     saltVertDiff4  :: use vertical bi-harmonic diffusion for salinity
301  C     saltIsActiveTr :: Salinity  is a dynamically active tracer  C     saltIsActiveTr :: Salinity  is a dynamically active tracer
302  C     saltForcing    :: Flag which turns external forcing of salinity on  C     saltForcing    :: Flag which turns external forcing of salinity on/off
 C                       and off.  
303  C     maskIniTemp    :: apply mask to initial Pot.Temp.  C     maskIniTemp    :: apply mask to initial Pot.Temp.
304  C     maskIniSalt    :: apply mask to initial salinity  C     maskIniSalt    :: apply mask to initial salinity
305  C     checkIniTemp   :: check for points with identically zero initial Pot.Temp.  C     checkIniTemp   :: check for points with identically zero initial Pot.Temp.
306  C     checkIniSalt   :: check for points with identically zero initial salinity  C     checkIniSalt   :: check for points with identically zero initial salinity
 C     useRealFreshWaterFlux :: if True (=Natural BCS), treats P+R-E flux  
 C                         as a real Fresh Water (=> changes the Sea Level)  
 C                         if F, converts P+R-E to salt flux (no SL effect)  
307  C- Pressure solver related parameters (PARM02)  C- Pressure solver related parameters (PARM02)
308  C     useSRCGSolver  :: Set to true to use conjugate gradient  C     useSRCGSolver  :: Set to true to use conjugate gradient
309  C                       solver with single reduction (only one call of  C                       solver with single reduction (only one call of
310  C                       s/r mpi_allreduce), default is false  C                       s/r mpi_allreduce), default is false
311  C- Time-stepping params:  C- Time-stepping & free-surface params:
312  C     rigidLid            :: Set to true to use rigid lid  C     rigidLid            :: Set to true to use rigid lid
313  C     implicitFreeSurface :: Set to true to use implicit free surface  C     implicitFreeSurface :: Set to true to use implicit free surface
314    C     uniformLin_PhiSurf  :: Set to true to use a uniform Bo_surf in the
315    C                            linear relation Phi_surf = Bo_surf*eta
316    C     uniformFreeSurfLev  :: TRUE if free-surface level-index is uniform (=1)
317  C     exactConserv        :: Set to true to conserve exactly the total Volume  C     exactConserv        :: Set to true to conserve exactly the total Volume
318  C     linFSConserveTr     :: Set to true to correct source/sink of tracer  C     linFSConserveTr     :: Set to true to correct source/sink of tracer
319  C                            at the surface due to Linear Free Surface  C                            at the surface due to Linear Free Surface
320  C     uniformLin_PhiSurf  :: Set to true to use a uniform Bo_surf in the  C     useRealFreshWaterFlux :: if True (=Natural BCS), treats P+R-E flux
321  C                            linear relation Phi_surf = Bo_surf*eta  C                         as a real Fresh Water (=> changes the Sea Level)
322    C                         if F, converts P+R-E to salt flux (no SL effect)
323  C     quasiHydrostatic :: Using non-hydrostatic terms in hydrostatic algorithm  C     quasiHydrostatic :: Using non-hydrostatic terms in hydrostatic algorithm
324  C     nonHydrostatic   :: Using non-hydrostatic algorithm  C     nonHydrostatic   :: Using non-hydrostatic algorithm
325  C     use3Dsolver      :: set to true to use 3-D pressure solver  C     use3Dsolver      :: set to true to use 3-D pressure solver
# Line 338  C     doThetaClimRelax :: Set true if re Line 345  C     doThetaClimRelax :: Set true if re
345  C                        climatology is required.  C                        climatology is required.
346  C     doSaltClimRelax  :: Set true if relaxation to salinity  C     doSaltClimRelax  :: Set true if relaxation to salinity
347  C                        climatology is required.  C                        climatology is required.
348    C     balanceThetaClimRelax :: substract global mean effect at every time step
349    C     balanceSaltClimRelax :: substract global mean effect at every time step
350  C     allowFreezing  :: Allows surface water to freeze and form ice  C     allowFreezing  :: Allows surface water to freeze and form ice
 C     allowInteriorFreezing :: Allow water at depth to freeze and rise to the surface  
351  C     useOldFreezing :: use the old version (before checkpoint52a_pre, 2003-11-12)  C     useOldFreezing :: use the old version (before checkpoint52a_pre, 2003-11-12)
352  C     periodicExternalForcing :: Set true if forcing is time-dependant  C     periodicExternalForcing :: Set true if forcing is time-dependant
353  C- I/O parameters -  C- I/O parameters -
# Line 366  C     printDomain     :: controls printi Line 374  C     printDomain     :: controls printi
374       & fluidIsAir, fluidIsWater,       & fluidIsAir, fluidIsWater,
375       & usingPCoords, usingZCoords, useDynP_inEos_Zc,       & usingPCoords, usingZCoords, useDynP_inEos_Zc,
376       & usingCartesianGrid, usingSphericalPolarGrid, rotateGrid,       & usingCartesianGrid, usingSphericalPolarGrid, rotateGrid,
377       & usingCurvilinearGrid, usingCylindricalGrid,       & usingCylindricalGrid, usingCurvilinearGrid, hasWetCSCorners,
378       & deepAtmosphere, setInterFDr, setCenterDr,       & deepAtmosphere, setInterFDr, setCenterDr,
379       & no_slip_sides, no_slip_bottom,       & no_slip_sides, no_slip_bottom,
380       & useFullLeith, useStrainTensionVisc, useAreaViscLength,       & useFullLeith, useStrainTensionVisc, useAreaViscLength,
# Line 378  C     printDomain     :: controls printi Line 386  C     printDomain     :: controls printi
386       & upwindVorticity, highOrderVorticity,       & upwindVorticity, highOrderVorticity,
387       & useAbsVorticity, upwindShear,       & useAbsVorticity, upwindShear,
388       & momStepping, calc_wVelocity, tempStepping, saltStepping,       & momStepping, calc_wVelocity, tempStepping, saltStepping,
389       & tempAdvection, tempIsActiveTr, tempForcing,       & addFrictionHeating,
390       & saltAdvection, saltIsActiveTr, saltForcing,       & tempAdvection, tempVertDiff4, tempIsActiveTr, tempForcing,
391         & saltAdvection, saltVertDiff4, saltIsActiveTr, saltForcing,
392       & maskIniTemp, maskIniSalt, checkIniTemp, checkIniSalt,       & maskIniTemp, maskIniSalt, checkIniTemp, checkIniSalt,
393       & useRealFreshWaterFlux, useSRCGSolver,       & useSRCGSolver,
394       & rigidLid, implicitFreeSurface, exactConserv, linFSConserveTr,       & rigidLid, implicitFreeSurface,
395       & uniformLin_PhiSurf,       & uniformLin_PhiSurf, uniformFreeSurfLev,
396         & exactConserv, linFSConserveTr, useRealFreshWaterFlux,
397       & quasiHydrostatic, nonHydrostatic, use3Dsolver,       & quasiHydrostatic, nonHydrostatic, use3Dsolver,
398       & implicitIntGravWave, staggerTimeStep, doResetHFactors,       & implicitIntGravWave, staggerTimeStep, doResetHFactors,
399       & implicitDiffusion, implicitViscosity,       & implicitDiffusion, implicitViscosity,
# Line 391  C     printDomain     :: controls printi Line 401  C     printDomain     :: controls printi
401       & multiDimAdvection, useMultiDimAdvec,       & multiDimAdvection, useMultiDimAdvec,
402       & momDissip_In_AB, doAB_onGtGs,       & momDissip_In_AB, doAB_onGtGs,
403       & balanceEmPmR, balanceQnet, balancePrintMean,       & balanceEmPmR, balanceQnet, balancePrintMean,
404         & balanceThetaClimRelax, balanceSaltClimRelax,
405       & doThetaClimRelax, doSaltClimRelax,       & doThetaClimRelax, doSaltClimRelax,
406       & allowFreezing, allowInteriorFreezing, useOldFreezing,       & allowFreezing, useOldFreezing,
407       & periodicExternalForcing,       & periodicExternalForcing,
408       & globalFiles,       & globalFiles,
409       & pickupStrictlyMatch, usePickupBeforeC54, startFromPickupAB2,       & pickupStrictlyMatch, usePickupBeforeC54, startFromPickupAB2,
# Line 400  C     printDomain     :: controls printi Line 411  C     printDomain     :: controls printi
411       & writePickupAtEnd,       & writePickupAtEnd,
412       & timeave_mdsio, snapshot_mdsio, monitor_stdio,       & timeave_mdsio, snapshot_mdsio, monitor_stdio,
413       & outputTypesInclusive, dumpInitAndLast,       & outputTypesInclusive, dumpInitAndLast,
414       & printDomain,       & printDomain
      & inAdMode, inAdTrue, inAdFalse, inAdExact  
415    
416        LOGICAL fluidIsAir        LOGICAL fluidIsAir
417        LOGICAL fluidIsWater        LOGICAL fluidIsWater
# Line 411  C     printDomain     :: controls printi Line 421  C     printDomain     :: controls printi
421        LOGICAL usingCartesianGrid        LOGICAL usingCartesianGrid
422        LOGICAL usingSphericalPolarGrid, rotateGrid        LOGICAL usingSphericalPolarGrid, rotateGrid
423        LOGICAL usingCylindricalGrid        LOGICAL usingCylindricalGrid
424        LOGICAL usingCurvilinearGrid        LOGICAL usingCurvilinearGrid, hasWetCSCorners
425        LOGICAL deepAtmosphere        LOGICAL deepAtmosphere
426        LOGICAL setInterFDr        LOGICAL setInterFDr
427        LOGICAL setCenterDr        LOGICAL setCenterDr
428        LOGICAL useNHMTerms  
429        LOGICAL no_slip_sides        LOGICAL no_slip_sides
430        LOGICAL no_slip_bottom        LOGICAL no_slip_bottom
431        LOGICAL useFullLeith        LOGICAL useFullLeith
# Line 425  C     printDomain     :: controls printi Line 435  C     printDomain     :: controls printi
435        LOGICAL momAdvection        LOGICAL momAdvection
436        LOGICAL momForcing        LOGICAL momForcing
437        LOGICAL momPressureForcing        LOGICAL momPressureForcing
438          LOGICAL metricTerms
439          LOGICAL useNHMTerms
440    
441        LOGICAL useCoriolis        LOGICAL useCoriolis
442          LOGICAL use3dCoriolis
443          LOGICAL useCDscheme
444        LOGICAL vectorInvariantMomentum        LOGICAL vectorInvariantMomentum
445          LOGICAL useEnergyConservingCoriolis
446          LOGICAL useJamartWetPoints
447          LOGICAL useJamartMomAdv
448          LOGICAL upwindVorticity
449          LOGICAL highOrderVorticity
450          LOGICAL useAbsVorticity
451          LOGICAL upwindShear
452          LOGICAL momStepping
453          LOGICAL calc_wVelocity
454          LOGICAL tempStepping
455          LOGICAL saltStepping
456          LOGICAL addFrictionHeating
457        LOGICAL tempAdvection        LOGICAL tempAdvection
458          LOGICAL tempVertDiff4
459        LOGICAL tempIsActiveTr        LOGICAL tempIsActiveTr
460        LOGICAL tempForcing        LOGICAL tempForcing
461        LOGICAL saltAdvection        LOGICAL saltAdvection
462          LOGICAL saltVertDiff4
463        LOGICAL saltIsActiveTr        LOGICAL saltIsActiveTr
464        LOGICAL saltForcing        LOGICAL saltForcing
465        LOGICAL maskIniTemp        LOGICAL maskIniTemp
466        LOGICAL maskIniSalt        LOGICAL maskIniSalt
467        LOGICAL checkIniTemp        LOGICAL checkIniTemp
468        LOGICAL checkIniSalt        LOGICAL checkIniSalt
       LOGICAL useRealFreshWaterFlux  
469        LOGICAL useSRCGSolver        LOGICAL useSRCGSolver
470        LOGICAL rigidLid        LOGICAL rigidLid
471        LOGICAL implicitFreeSurface        LOGICAL implicitFreeSurface
472          LOGICAL uniformLin_PhiSurf
473          LOGICAL uniformFreeSurfLev
474        LOGICAL exactConserv        LOGICAL exactConserv
475        LOGICAL linFSConserveTr        LOGICAL linFSConserveTr
476        LOGICAL uniformLin_PhiSurf        LOGICAL useRealFreshWaterFlux
477        LOGICAL quasiHydrostatic        LOGICAL quasiHydrostatic
478        LOGICAL nonHydrostatic        LOGICAL nonHydrostatic
479        LOGICAL use3Dsolver        LOGICAL use3Dsolver
480        LOGICAL implicitIntGravWave        LOGICAL implicitIntGravWave
481        LOGICAL staggerTimeStep        LOGICAL staggerTimeStep
482        LOGICAL doResetHFactors        LOGICAL doResetHFactors
       LOGICAL momStepping  
       LOGICAL calc_wVelocity  
       LOGICAL tempStepping  
       LOGICAL saltStepping  
       LOGICAL metricTerms  
       LOGICAL use3dCoriolis  
       LOGICAL useCDscheme  
       LOGICAL useEnergyConservingCoriolis  
       LOGICAL useJamartWetPoints  
       LOGICAL useJamartMomAdv  
       LOGICAL upwindVorticity  
       LOGICAL highOrderVorticity  
       LOGICAL useAbsVorticity  
       LOGICAL upwindShear  
483        LOGICAL implicitDiffusion        LOGICAL implicitDiffusion
484        LOGICAL implicitViscosity        LOGICAL implicitViscosity
485        LOGICAL tempImplVertAdv        LOGICAL tempImplVertAdv
# Line 478  C     printDomain     :: controls printi Line 494  C     printDomain     :: controls printi
494        LOGICAL balancePrintMean        LOGICAL balancePrintMean
495        LOGICAL doThetaClimRelax        LOGICAL doThetaClimRelax
496        LOGICAL doSaltClimRelax        LOGICAL doSaltClimRelax
497          LOGICAL balanceThetaClimRelax
498          LOGICAL balanceSaltClimRelax
499        LOGICAL allowFreezing        LOGICAL allowFreezing
       LOGICAL allowInteriorFreezing  
500        LOGICAL useOldFreezing        LOGICAL useOldFreezing
501        LOGICAL periodicExternalForcing        LOGICAL periodicExternalForcing
502        LOGICAL globalFiles        LOGICAL globalFiles
# Line 492  C     printDomain     :: controls printi Line 509  C     printDomain     :: controls printi
509        LOGICAL outputTypesInclusive        LOGICAL outputTypesInclusive
510        LOGICAL dumpInitAndLast        LOGICAL dumpInitAndLast
511        LOGICAL printDomain        LOGICAL printDomain
       LOGICAL inAdMode, inAdTrue, inAdFalse, inAdExact  
512    
513  C--   COMMON /PARM_R/ "Real" valued parameters used by the model.  C--   COMMON /PARM_R/ "Real" valued parameters used by the model.
514  C     cg2dTargetResidual  C     cg2dTargetResidual
# Line 607  C     viscA4GridMax:: maximum and minimu Line 623  C     viscA4GridMax:: maximum and minimu
623  C     viscA4GridMin::  in terms of non-dimensional grid-size dependent viscosity  C     viscA4GridMin::  in terms of non-dimensional grid-size dependent viscosity
624  C     diffKhT   :: Laplacian diffusion coeff. for mixing of  C     diffKhT   :: Laplacian diffusion coeff. for mixing of
625  C                 heat laterally ( m^2/s )  C                 heat laterally ( m^2/s )
 C     diffKrNrT :: vertical profile of Laplacian diffusion coeff.  
 C                 for mixing of heat vertically ( units of r^2/s )  
626  C     diffK4T   :: Biharmonic diffusion coeff. for mixing of  C     diffK4T   :: Biharmonic diffusion coeff. for mixing of
627  C                 heat laterally ( m^4/s )  C                 heat laterally ( m^4/s )
628    C     diffKrNrT :: vertical profile of Laplacian diffusion coeff.
629    C                 for mixing of heat vertically ( units of r^2/s )
630    C     diffKr4T  :: vertical profile of Biharmonic diffusion coeff.
631    C                 for mixing of heat vertically ( units of r^4/s )
632  C     diffKhS  ::  Laplacian diffusion coeff. for mixing of  C     diffKhS  ::  Laplacian diffusion coeff. for mixing of
633  C                 salt laterally ( m^2/s )  C                 salt laterally ( m^2/s )
 C     diffKrNrS :: vertical profile of Laplacian diffusion coeff.  
 C                 for mixing of salt vertically ( units of r^2/s ),  
634  C     diffK4S   :: Biharmonic diffusion coeff. for mixing of  C     diffK4S   :: Biharmonic diffusion coeff. for mixing of
635  C                 salt laterally ( m^4/s )  C                 salt laterally ( m^4/s )
636    C     diffKrNrS :: vertical profile of Laplacian diffusion coeff.
637    C                 for mixing of salt vertically ( units of r^2/s ),
638    C     diffKr4S  :: vertical profile of Biharmonic diffusion coeff.
639    C                 for mixing of salt vertically ( units of r^4/s )
640  C     diffKrBL79surf :: T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979  C     diffKrBL79surf :: T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979
641  C     diffKrBL79deep :: T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979  C     diffKrBL79deep :: T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979
642  C     diffKrBL79scl  :: depth scale for arctan fn (m) Bryan and Lewis, 1979  C     diffKrBL79scl  :: depth scale for arctan fn (m) Bryan and Lewis, 1979
# Line 636  C                    Frequency of checkp Line 656  C                    Frequency of checkp
656  C                    are referenced to this clock. ( s )  C                    are referenced to this clock. ( s )
657  C     deltaTMom    :: Timestep for momemtum equations ( s )  C     deltaTMom    :: Timestep for momemtum equations ( s )
658  C     dTtracerLev  :: Timestep for tracer equations ( s ), function of level k  C     dTtracerLev  :: Timestep for tracer equations ( s ), function of level k
659  C     deltaTfreesurf :: Timestep for free-surface equation ( s )  C     deltaTFreeSurf :: Timestep for free-surface equation ( s )
660  C     freesurfFac  :: Parameter to turn implicit free surface term on or off  C     freeSurfFac  :: Parameter to turn implicit free surface term on or off
661  C                    freesurfac = 1. uses implicit free surface  C                     freeSurFac = 1. uses implicit free surface
662  C                    freesurfac = 0. uses rigid lid  C                     freeSurFac = 0. uses rigid lid
663  C     abEps        :: Adams-Bashforth-2 stabilizing weight  C     abEps        :: Adams-Bashforth-2 stabilizing weight
664  C     alph_AB      :: Adams-Bashforth-3 primary factor  C     alph_AB      :: Adams-Bashforth-3 primary factor
665  C     beta_AB      :: Adams-Bashforth-3 secondary factor  C     beta_AB      :: Adams-Bashforth-3 secondary factor
# Line 664  C     endTime       :: Ending time for t Line 684  C     endTime       :: Ending time for t
684  C     chkPtFreq     :: Frequency of rolling check pointing ( s ).  C     chkPtFreq     :: Frequency of rolling check pointing ( s ).
685  C     pChkPtFreq    :: Frequency of permanent check pointing ( s ).  C     pChkPtFreq    :: Frequency of permanent check pointing ( s ).
686  C     dumpFreq      :: Frequency with which model state is written to  C     dumpFreq      :: Frequency with which model state is written to
687  C                     post-processing files ( s ).  C                      post-processing files ( s ).
688  C     diagFreq      :: Frequency with which model writes diagnostic output  C     diagFreq      :: Frequency with which model writes diagnostic output
689  C                     of intermediate quantities.  C                      of intermediate quantities.
690  C     afFacMom      :: Advection of momentum term tracer parameter  C     afFacMom      :: Advection of momentum term tracer parameter
691  C     vfFacMom      :: Momentum viscosity tracer parameter  C     vfFacMom      :: Momentum viscosity tracer parameter
692  C     pfFacMom      :: Momentum pressure forcing tracer parameter  C     pfFacMom      :: Momentum pressure forcing tracer parameter
# Line 715  C                           is to be rep Line 735  C                           is to be rep
735  C                           (affects myabs, mymin, mymax)  C                           (affects myabs, mymin, mymax)
736  C     nh_Am2        :: scales the non-hydrostatic terms and changes internal scales  C     nh_Am2        :: scales the non-hydrostatic terms and changes internal scales
737  C                      (i.e. allows convection at different Rayleigh numbers)  C                      (i.e. allows convection at different Rayleigh numbers)
738    C     tCylIn        :: Temperature of the cylinder inner boundary
739    C     tCylOut       :: Temperature of the cylinder outer boundary
740  C     phiEuler      :: Euler angle, rotation about original z-axis  C     phiEuler      :: Euler angle, rotation about original z-axis
741  C     thetaEuler    :: Euler angle, rotation about new x-axis  C     thetaEuler    :: Euler angle, rotation about new x-axis
742  C     psiEuler      :: Euler angle, rotation about new z-axis  C     psiEuler      :: Euler angle, rotation about new z-axis
743        COMMON /PARM_R/ cg2dTargetResidual, cg2dTargetResWunit,        COMMON /PARM_R/ cg2dTargetResidual, cg2dTargetResWunit,
744       & cg2dpcOffDFac, cg3dTargetResidual,       & cg2dpcOffDFac, cg3dTargetResidual,
745       & delR, delRc, xgOrigin, ygOrigin,       & delR, delRc, xgOrigin, ygOrigin,
746       & deltaT, deltaTmom, dTtracerLev, deltaTfreesurf, deltaTClock,       & deltaT, deltaTMom, dTtracerLev, deltaTFreeSurf, deltaTClock,
747       & abEps, alph_AB, beta_AB,       & abEps, alph_AB, beta_AB,
748       & rSphere, recip_rSphere, radius_fromHorizGrid,       & rSphere, recip_rSphere, radius_fromHorizGrid,
749       & f0, beta, fPrime, omega, rotationPeriod,       & f0, beta, fPrime, omega, rotationPeriod,
# Line 734  C     psiEuler      :: Euler angle, rota Line 756  C     psiEuler      :: Euler angle, rota
756       & viscA4Grid, viscA4GridMax, viscA4GridMin,       & viscA4Grid, viscA4GridMax, viscA4GridMin,
757       & viscAhReMax, viscA4ReMax,       & viscAhReMax, viscA4ReMax,
758       & viscC4leith, viscC4leithD, viscArNr,       & viscC4leith, viscC4leithD, viscArNr,
759       & diffKhT, diffK4T, diffKrNrT,       & diffKhT, diffK4T, diffKrNrT, diffKr4T,
760       & diffKhS, diffK4S, diffKrNrS,       & diffKhS, diffK4S, diffKrNrS, diffKr4S,
761       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,
762       & BL79LatVary,       & BL79LatVary,
763       & diffKrBLEQsurf, diffKrBLEQdeep, diffKrBLEQscl, diffKrBLEQHo,       & diffKrBLEQsurf, diffKrBLEQdeep, diffKrBLEQscl, diffKrBLEQHo,
# Line 773  C     psiEuler      :: Euler angle, rota Line 795  C     psiEuler      :: Euler angle, rota
795        _RL ygOrigin        _RL ygOrigin
796        _RL deltaT        _RL deltaT
797        _RL deltaTClock        _RL deltaTClock
798        _RL deltaTmom        _RL deltaTMom
799        _RL dTtracerLev(Nr)        _RL dTtracerLev(Nr)
800        _RL deltaTfreesurf        _RL deltaTFreeSurf
801        _RL abEps, alph_AB, beta_AB        _RL abEps, alph_AB, beta_AB
802        _RL rSphere        _RL rSphere
803        _RL recip_rSphere        _RL recip_rSphere
# Line 818  C     psiEuler      :: Euler angle, rota Line 840  C     psiEuler      :: Euler angle, rota
840        _RL viscC4leithD        _RL viscC4leithD
841        _RL viscC4smag        _RL viscC4smag
842        _RL diffKhT        _RL diffKhT
       _RL diffKrNrT(Nr)  
843        _RL diffK4T        _RL diffK4T
844          _RL diffKrNrT(Nr)
845          _RL diffKr4T(Nr)
846        _RL diffKhS        _RL diffKhS
       _RL diffKrNrS(Nr)  
847        _RL diffK4S        _RL diffK4S
848          _RL diffKrNrS(Nr)
849          _RL diffKr4S(Nr)
850        _RL diffKrBL79surf        _RL diffKrBL79surf
851        _RL diffKrBL79deep        _RL diffKrBL79deep
852        _RL diffKrBL79scl        _RL diffKrBL79scl
# Line 889  C     psiEuler      :: Euler angle, rota Line 913  C     psiEuler      :: Euler angle, rota
913        _RL bottomDragQuadratic        _RL bottomDragQuadratic
914        _RL smoothAbsFuncRange        _RL smoothAbsFuncRange
915        _RL nh_Am2        _RL nh_Am2
916        _RL tCylIn        _RL tCylIn, tCylOut
       _RL tCylOut  
917        _RL phiEuler, thetaEuler, psiEuler        _RL phiEuler, thetaEuler, psiEuler
918    
919  C--   COMMON /PARM_A/ Thermodynamics constants ?  C--   COMMON /PARM_A/ Thermodynamics constants ?
# Line 938  C Logical flags for selecting packages Line 961  C Logical flags for selecting packages
961        LOGICAL useCheapAML        LOGICAL useCheapAML
962        LOGICAL useGrdchk        LOGICAL useGrdchk
963        LOGICAL useSMOOTH        LOGICAL useSMOOTH
964          LOGICAL usePROFILES
965        LOGICAL useECCO        LOGICAL useECCO
966        LOGICAL useSBO        LOGICAL useSBO
967        LOGICAL useFLT        LOGICAL useFLT
# Line 946  C Logical flags for selecting packages Line 970  C Logical flags for selecting packages
970        LOGICAL useRBCS        LOGICAL useRBCS
971        LOGICAL useOffLine        LOGICAL useOffLine
972        LOGICAL useMATRIX        LOGICAL useMATRIX
973          LOGICAL useFRAZIL
974        LOGICAL useSEAICE        LOGICAL useSEAICE
975        LOGICAL useSALT_PLUME        LOGICAL useSALT_PLUME
976        LOGICAL useShelfIce        LOGICAL useShelfIce
977        LOGICAL useStreamIce        LOGICAL useStreamIce
978        LOGICAL useICEFRONT        LOGICAL useICEFRONT
979        LOGICAL useThSIce        LOGICAL useThSIce
980          LOGICAL useLand
981        LOGICAL useATM2d        LOGICAL useATM2d
982        LOGICAL useAIM        LOGICAL useAIM
983        LOGICAL useLand        LOGICAL useAtm_Phys
984        LOGICAL useFizhi        LOGICAL useFizhi
985        LOGICAL useGridAlt        LOGICAL useGridAlt
986        LOGICAL useDiagnostics        LOGICAL useDiagnostics
# Line 969  C Logical flags for selecting packages Line 995  C Logical flags for selecting packages
995       &        useOPPS, usePP81, useMY82, useGGL90, useKPP,       &        useOPPS, usePP81, useMY82, useGGL90, useKPP,
996       &        useGMRedi, useBBL, useDOWN_SLOPE,       &        useGMRedi, useBBL, useDOWN_SLOPE,
997       &        useCAL, useEXF, useBulkForce, useEBM, useCheapAML,       &        useCAL, useEXF, useBulkForce, useEBM, useCheapAML,
998       &        useGrdchk, useSMOOTH, useECCO, useSBO, useFLT,       &        useGrdchk,useSMOOTH,usePROFILES,useECCO,useSBO, useFLT,
999       &        usePTRACERS, useGCHEM, useRBCS, useOffLine, useMATRIX,       &        usePTRACERS, useGCHEM, useRBCS, useOffLine, useMATRIX,
1000       &        useSEAICE, useSALT_PLUME, useShelfIce, useStreamIce,       &        useFRAZIL, useSEAICE, useSALT_PLUME, useShelfIce,
1001       &        useICEFRONT, useThSIce,       &        useStreamIce, useICEFRONT, useThSIce, useLand,
1002       &        useATM2D, useAIM, useLand, useFizhi, useGridAlt,       &        useATM2D, useAIM, useAtm_Phys, useFizhi, useGridAlt,
1003       &        useDiagnostics, useREGRID, useLayers, useMNC,       &        useDiagnostics, useREGRID, useLayers, useMNC,
1004       &        useRunClock, useEMBED_FILES,       &        useRunClock, useEMBED_FILES,
1005       &        useMYPACKAGE       &        useMYPACKAGE
1006    
 C     Logical flags for turning off parts of the code in adjoint mode  
       LOGICAL useKPPinAdMode, useKPPinFwdMode  
       LOGICAL useGMrediInAdMode, useGMrediInFwdMode  
       LOGICAL useSEAICEinAdMode, useSEAICEinFwdMode  
       COMMON /PARM_PACKAGES_ADJ/  
      &       useKPPinAdMode, useKPPinFwdMode,  
      &       useGMrediInAdMode, useGMrediInFwdMode,  
      &       useSEAICEinAdMode, useSEAICEinFwdMode  
   
1007  CEH3 ;;; Local Variables: ***  CEH3 ;;; Local Variables: ***
1008  CEH3 ;;; mode:fortran ***  CEH3 ;;; mode:fortran ***
1009  CEH3 ;;; End: ***  CEH3 ;;; End: ***
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