/[MITgcm]/MITgcm/model/inc/PARAMS.h
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revision 1.189 by edhill, Tue Aug 15 04:24:03 2006 UTC revision 1.205 by jmc, Fri Oct 19 14:34:13 2007 UTC
# Line 43  C     UNSET_xxx :: Used to indicate vari Line 43  C     UNSET_xxx :: Used to indicate vari
43        INTEGER UNSET_I        INTEGER UNSET_I
44        PARAMETER ( UNSET_I      = 123456789  )        PARAMETER ( UNSET_I      = 123456789  )
45    
 C     Checkpoint data  
       INTEGER maxNoChkptLev  
       PARAMETER ( maxNoChkptLev = 2 )  
   
46  C--   COMMON /PARM_C/ Character valued parameters used by the model.  C--   COMMON /PARM_C/ Character valued parameters used by the model.
47  C     checkPtSuff :: List of checkpoint file suffices  C     buoyancyRelation :: Flag used to indicate which relation to use to
48    C                         get buoyancy.
49    C     eosType         :: choose the equation of state:
50    C                        LINEAR, POLY3, UNESCO, JMD95Z, JMD95P, MDJWF, IDEALGAS
51    C     pickupSuff      :: force to start from pickup files (even if nIter0=0)
52    C                        and read pickup files with this suffix (max 10 Char.)
53    C     mdsioLocalDir   :: read-write tiled file from/to this directory name
54    C                        (+ 4 digits Processor-Rank) instead of current dir.
55    C     tRefFile      :: File containing reference Potential Temperat.  tRef (1.D)
56    C     sRefFile      :: File containing reference salinity/spec.humid. sRef (1.D)
57    C     rhoRefFile    :: File containing reference density profile rhoRef (1.D)
58    C     delRFile      :: File containing vertical grid spacing delR  (1.D array)
59    C     delRcFile     :: File containing vertical grid spacing delRc (1.D array)
60  C     delXFile      :: File containing X-spacing grid definition (1.D array)  C     delXFile      :: File containing X-spacing grid definition (1.D array)
61  C     delYFile      :: File containing Y-spacing grid definition (1.D array)  C     delYFile      :: File containing Y-spacing grid definition (1.D array)
62  C     horizGridFile :: File containing horizontal-grid definition  C     horizGridFile :: File containing horizontal-grid definition
63  C                        (only when using curvilinear_grid)  C                        (only when using curvilinear_grid)
64  C     bathyFile   :: File containing bathymetry. If not defined bathymetry  C     bathyFile       :: File containing bathymetry. If not defined bathymetry
65  C                   is taken from inline function.  C                        is taken from inline function.
66  C     topoFile    :: File containing the topography of the surface (unit=m)  C     topoFile        :: File containing the topography of the surface (unit=m)
67  C                   (mainly used for the atmosphere = ground height).  C                        (mainly used for the atmosphere = ground height).
68  C     shelfIceFile:: File containing the topography of the shelfice draught  C     shelfIceFile    :: File containing the topography of the shelfice draught
69  C                    (unit=m)  C                        (unit=m)
70  C     hydrogThetaFile :: File containing initial hydrographic data for potential  C     hydrogThetaFile :: File containing initial hydrographic data (3-D)
71  C                       temperature.  C                        for potential temperature.
72  C     hydrogSaltFile  :: File containing initial hydrographic data for salinity.  C     hydrogSaltFile  :: File containing initial hydrographic data (3-D)
73    C                        for salinity.
74    C     diffKrFile      :: File containing 3D specification of vertical diffusivity
75  C     zonalWindFile   :: File containing zonal wind data  C     zonalWindFile   :: File containing zonal wind data
76  C     meridWindFile   :: File containing meridional wind data  C     meridWindFile   :: File containing meridional wind data
77  C     thetaClimFile   :: File containing theta climataology used  C     thetaClimFile   :: File containing surface theta climataology used
78  C                       in relaxation term -lambda(theta-theta*)  C                       in relaxation term -lambda(theta-theta*)
79  C     saltClimFile    :: File containing salt climataology used  C     saltClimFile    :: File containing surface salt climataology used
80  C                       in relaxation term -lambda(salt-salt*)  C                       in relaxation term -lambda(salt-salt*)
81  C     surfQfile       :: File containing surface heat flux, excluding SW  C     surfQfile       :: File containing surface heat flux, excluding SW
82  C                        (old version, kept for backward compatibility)  C                        (old version, kept for backward compatibility)
# Line 78  C     saltFluxFile    :: File containing Line 88  C     saltFluxFile    :: File containing
88  C     pLoadFile       :: File containing pressure loading  C     pLoadFile       :: File containing pressure loading
89  C     eddyTauxFile    :: File containing zonal Eddy stress data  C     eddyTauxFile    :: File containing zonal Eddy stress data
90  C     eddyTauyFile    :: File containing meridional Eddy stress data  C     eddyTauyFile    :: File containing meridional Eddy stress data
 C     buoyancyRelation :: Flag used to indicate which relation to use to  
 C                        get buoyancy.  
 C     eosType         :: choose the equation of state:  
 C                        LINEAR, POLY3, UNESCO, JMD95Z, JMD95P, MDJWF, IDEALGAS  
91  C     the_run_name    :: string identifying the name of the model "run"  C     the_run_name    :: string identifying the name of the model "run"
92        COMMON /PARM_C/ checkPtSuff,        COMMON /PARM_C/
93         &                buoyancyRelation, eosType,
94         &                pickupSuff, mdsioLocalDir,
95         &                tRefFile, sRefFile, rhoRefFile,
96         &                delRFile, delRcFile,
97       &                delXFile, delYFile, horizGridFile,       &                delXFile, delYFile, horizGridFile,
98       &                bathyFile, topoFile, shelfIceFile,       &                bathyFile, topoFile, shelfIceFile,
99       &                hydrogThetaFile, hydrogSaltFile,       &                hydrogThetaFile, hydrogSaltFile, diffKrFile,
100       &                zonalWindFile, meridWindFile, thetaClimFile,       &                zonalWindFile, meridWindFile, thetaClimFile,
101       &                saltClimFile, buoyancyRelation,       &                saltClimFile,
102       &                EmPmRfile, saltFluxFile,       &                EmPmRfile, saltFluxFile,
103       &                surfQfile, surfQnetFile, surfQswFile,       &                surfQfile, surfQnetFile, surfQswFile,
104       &                lambdaThetaFile, lambdaSaltFile,       &                lambdaThetaFile, lambdaSaltFile,
105       &                uVelInitFile, vVelInitFile, pSurfInitFile,       &                uVelInitFile, vVelInitFile, pSurfInitFile,
106       &                dQdTfile, ploadFile,       &                dQdTfile, ploadFile,
107       &                eddyTauxFile, eddyTauyFile,       &                eddyTauxFile, eddyTauyFile,
      &                eosType, pickupSuff,  
      &                mdsioLocalDir,  
108       &                the_run_name       &                the_run_name
109        CHARACTER*(5) checkPtSuff(maxNoChkptLev)        CHARACTER*(MAX_LEN_FNAM) buoyancyRelation
110          CHARACTER*(6)  eosType
111          CHARACTER*(10) pickupSuff
112          CHARACTER*(MAX_LEN_FNAM) mdsioLocalDir
113          CHARACTER*(MAX_LEN_FNAM) tRefFile
114          CHARACTER*(MAX_LEN_FNAM) sRefFile
115          CHARACTER*(MAX_LEN_FNAM) rhoRefFile
116          CHARACTER*(MAX_LEN_FNAM) delRFile
117          CHARACTER*(MAX_LEN_FNAM) delRcFile
118        CHARACTER*(MAX_LEN_FNAM) delXFile        CHARACTER*(MAX_LEN_FNAM) delXFile
119        CHARACTER*(MAX_LEN_FNAM) delYFile        CHARACTER*(MAX_LEN_FNAM) delYFile
120        CHARACTER*(MAX_LEN_FNAM) horizGridFile        CHARACTER*(MAX_LEN_FNAM) horizGridFile
121        CHARACTER*(MAX_LEN_FNAM) bathyFile, topoFile, shelfIceFile        CHARACTER*(MAX_LEN_FNAM) bathyFile, topoFile, shelfIceFile
122        CHARACTER*(MAX_LEN_FNAM) hydrogThetaFile        CHARACTER*(MAX_LEN_FNAM) hydrogThetaFile, hydrogSaltFile
123        CHARACTER*(MAX_LEN_FNAM) hydrogSaltFile        CHARACTER*(MAX_LEN_FNAM) diffKrFile
124        CHARACTER*(MAX_LEN_FNAM) zonalWindFile        CHARACTER*(MAX_LEN_FNAM) zonalWindFile
125        CHARACTER*(MAX_LEN_FNAM) meridWindFile        CHARACTER*(MAX_LEN_FNAM) meridWindFile
126        CHARACTER*(MAX_LEN_FNAM) thetaClimFile        CHARACTER*(MAX_LEN_FNAM) thetaClimFile
# Line 114  C     the_run_name    :: string identify Line 130  C     the_run_name    :: string identify
130        CHARACTER*(MAX_LEN_FNAM) surfQswFile        CHARACTER*(MAX_LEN_FNAM) surfQswFile
131        CHARACTER*(MAX_LEN_FNAM) EmPmRfile        CHARACTER*(MAX_LEN_FNAM) EmPmRfile
132        CHARACTER*(MAX_LEN_FNAM) saltFluxFile        CHARACTER*(MAX_LEN_FNAM) saltFluxFile
       CHARACTER*(MAX_LEN_FNAM) buoyancyRelation  
133        CHARACTER*(MAX_LEN_FNAM) uVelInitFile        CHARACTER*(MAX_LEN_FNAM) uVelInitFile
134        CHARACTER*(MAX_LEN_FNAM) vVelInitFile        CHARACTER*(MAX_LEN_FNAM) vVelInitFile
135        CHARACTER*(MAX_LEN_FNAM) pSurfInitFile        CHARACTER*(MAX_LEN_FNAM) pSurfInitFile
# Line 124  C     the_run_name    :: string identify Line 139  C     the_run_name    :: string identify
139        CHARACTER*(MAX_LEN_FNAM) eddyTauyFile        CHARACTER*(MAX_LEN_FNAM) eddyTauyFile
140        CHARACTER*(MAX_LEN_FNAM) lambdaThetaFile        CHARACTER*(MAX_LEN_FNAM) lambdaThetaFile
141        CHARACTER*(MAX_LEN_FNAM) lambdaSaltFile        CHARACTER*(MAX_LEN_FNAM) lambdaSaltFile
142        CHARACTER*(MAX_LEN_FNAM) mdsioLocalDir        CHARACTER*(MAX_LEN_PREC/2) the_run_name
       CHARACTER*(MAX_LEN_FNAM) the_run_name  
       CHARACTER*(6) eosType  
       CHARACTER*(10) pickupSuff  
143    
144  C--   COMMON /PARM_I/ Integer valued parameters used by the model.  C--   COMMON /PARM_I/ Integer valued parameters used by the model.
145  C     cg2dMaxIters        :: Maximum number of iterations in the  C     cg2dMaxIters        :: Maximum number of iterations in the
# Line 142  C     cg3dChkResFreq      :: Frequency w Line 154  C     cg3dChkResFreq      :: Frequency w
154  C                           in con. grad solver.  C                           in con. grad solver.
155  C     nIter0              :: Start time-step number of for this run  C     nIter0              :: Start time-step number of for this run
156  C     nTimeSteps          :: Number of timesteps to execute  C     nTimeSteps          :: Number of timesteps to execute
 C     numStepsPerPickup   :: For offline setup. Frequency of pickup  
 C                           of flow fields.  
157  C     writeStatePrec      :: Precision used for writing model state.  C     writeStatePrec      :: Precision used for writing model state.
158  C     writeBinaryPrec     :: Precision used for writing binary files  C     writeBinaryPrec     :: Precision used for writing binary files
159  C     readBinaryPrec      :: Precision used for reading binary files  C     readBinaryPrec      :: Precision used for reading binary files
 C     nCheckLev           :: Holds current checkpoint level  
160  C     nonlinFreeSurf      :: option related to non-linear free surface  C     nonlinFreeSurf      :: option related to non-linear free surface
161  C                           =0 Linear free surface ; >0 Non-linear  C                           =0 Linear free surface ; >0 Non-linear
162  C     select_rStar        :: option related to r* vertical coordinate  C     select_rStar        :: option related to r* vertical coordinate
# Line 169  C     debugLevel          :: debug level Line 178  C     debugLevel          :: debug level
178       &        cg3dMaxIters,       &        cg3dMaxIters,
179       &        cg3dChkResFreq,       &        cg3dChkResFreq,
180       &        nIter0, nTimeSteps, nEndIter,       &        nIter0, nTimeSteps, nEndIter,
181       &        numStepsPerPickup,       &        writeStatePrec,
      &        writeStatePrec, nCheckLev,  
182       &        writeBinaryPrec, readBinaryPrec,       &        writeBinaryPrec, readBinaryPrec,
183       &        nonlinFreeSurf, select_rStar,       &        nonlinFreeSurf, select_rStar,
184       &        momForcingOutAB, tracForcingOutAB,       &        momForcingOutAB, tracForcingOutAB,
# Line 186  C     debugLevel          :: debug level Line 194  C     debugLevel          :: debug level
194        INTEGER nIter0        INTEGER nIter0
195        INTEGER nTimeSteps        INTEGER nTimeSteps
196        INTEGER nEndIter        INTEGER nEndIter
       INTEGER numStepsPerPickup  
197        INTEGER writeStatePrec        INTEGER writeStatePrec
198        INTEGER writeBinaryPrec        INTEGER writeBinaryPrec
199        INTEGER readBinaryPrec        INTEGER readBinaryPrec
       INTEGER nCheckLev  
200        INTEGER nonlinFreeSurf        INTEGER nonlinFreeSurf
201        INTEGER select_rStar        INTEGER select_rStar
202        INTEGER momForcingOutAB, tracForcingOutAB        INTEGER momForcingOutAB, tracForcingOutAB
# Line 213  C                          coordinate fr Line 219  C                          coordinate fr
219  C     usingSphericalPolarGrid :: If TRUE grid generation will be in a  C     usingSphericalPolarGrid :: If TRUE grid generation will be in a
220  C                               spherical polar frame.  C                               spherical polar frame.
221  C     usingCylindricalGrid :: If TRUE grid generation will be Cylindrical  C     usingCylindricalGrid :: If TRUE grid generation will be Cylindrical
222    C     usingCurvilinearGrid :: If TRUE, use a curvilinear grid (to be provided)
223    C     deepAtmosphere :: deep model (drop the shallow-atmosphere approximation)
224  C     no_slip_sides :: Impose "no-slip" at lateral boundaries.  C     no_slip_sides :: Impose "no-slip" at lateral boundaries.
225  C     no_slip_bottom :: Impose "no-slip" at bottom boundary.  C     no_slip_bottom :: Impose "no-slip" at bottom boundary.
226  C     momViscosity  :: Flag which turns momentum friction terms on and off.  C     momViscosity  :: Flag which turns momentum friction terms on and off.
# Line 243  C     useStrainTensionVisc:: Set to true Line 251  C     useStrainTensionVisc:: Set to true
251  C     rigidLid            :: Set to true to use rigid lid  C     rigidLid            :: Set to true to use rigid lid
252  C     implicitFreeSurface :: Set to true to use implicit free surface  C     implicitFreeSurface :: Set to true to use implicit free surface
253  C     exactConserv        :: Set to true to conserve exactly the total Volume  C     exactConserv        :: Set to true to conserve exactly the total Volume
254    C     linFSConserveTr     :: Set to true to correct source/sink of tracer
255    C                            at the surface due to Linear Free Surface
256  C     uniformLin_PhiSurf  :: Set to true to use a uniform Bo_surf in the  C     uniformLin_PhiSurf  :: Set to true to use a uniform Bo_surf in the
257  C                           linear relation Phi_surf = Bo_surf*eta  C                           linear relation Phi_surf = Bo_surf*eta
258  C     use3Dsolver   :: set to true to use 3-D pressure solver  C     use3Dsolver   :: set to true to use 3-D pressure solver
# Line 273  C     useMultiDimAdvec  :: True if multi Line 283  C     useMultiDimAdvec  :: True if multi
283  C     momDissip_In_AB   :: if False, put Dissipation tendency contribution  C     momDissip_In_AB   :: if False, put Dissipation tendency contribution
284  C                          out off Adams-Bashforth time stepping.  C                          out off Adams-Bashforth time stepping.
285  C     doAB_onGtGs       :: if the Adams-Bashforth time stepping is used, always  C     doAB_onGtGs       :: if the Adams-Bashforth time stepping is used, always
286  C                          apply AB on tracer tendencies (rather than on Tracer)  C                          apply AB on tracer tendencies (rather than on Tracer)
287  C     startFromPickupAB2 :: with AB-3 code, start from an AB-2 pickup  C     startFromPickupAB2 :: with AB-3 code, start from an AB-2 pickup
288    C     usePickupBeforeC54 :: start from old-pickup files, generated with code from
289    C                           before checkpoint-54a, Jul 06, 2004.
290  C     doThetaClimRelax :: Set true if relaxation to temperature  C     doThetaClimRelax :: Set true if relaxation to temperature
291  C                        climatology is required.  C                        climatology is required.
292  C     doSaltClimRelax  :: Set true if relaxation to salinity  C     doSaltClimRelax  :: Set true if relaxation to salinity
# Line 290  C     fluidIsWater     :: Set to indicat Line 302  C     fluidIsWater     :: Set to indicat
302  C                        is water  C                        is water
303  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)
304  C                         this requires specific code for restart & exchange  C                         this requires specific code for restart & exchange
305  C     setCenterDr    :: set cell Center depth and put Interface at the middle  C     setInterFDr    :: set Interface depth (put cell-Center at the middle)
306    C     setCenterDr    :: set cell-Center depth (put Interface at the middle)
307  C     nonHydrostatic :: Using non-hydrostatic terms  C     nonHydrostatic :: Using non-hydrostatic terms
308  C     quasiHydrostatic :: Using non-hydrostatic terms in hydrostatic algorithm  C     quasiHydrostatic :: Using non-hydrostatic terms in hydrostatic algorithm
309  C     globalFiles    :: Selects between "global" and "tiled" files  C     globalFiles    :: Selects between "global" and "tiled" files
# Line 314  C     balancePrintMean:: print substract Line 327  C     balancePrintMean:: print substract
327    
328        COMMON /PARM_L/ usingCartesianGrid, usingSphericalPolarGrid,        COMMON /PARM_L/ usingCartesianGrid, usingSphericalPolarGrid,
329       & usingCurvilinearGrid, usingCylindricalGrid,       & usingCurvilinearGrid, usingCylindricalGrid,
330         & deepAtmosphere, setInterFDr, setCenterDr,
331       & no_slip_sides,no_slip_bottom,       & no_slip_sides,no_slip_bottom,
332       & momViscosity, momAdvection, momForcing, useCoriolis,       & momViscosity, momAdvection, momForcing, useCoriolis,
333       & momPressureForcing, vectorInvariantMomentum,       & momPressureForcing, vectorInvariantMomentum,
# Line 322  C     balancePrintMean:: print substract Line 336  C     balancePrintMean:: print substract
336       & useRealFreshWaterFlux,       & useRealFreshWaterFlux,
337       & useFullLeith, useStrainTensionVisc,       & useFullLeith, useStrainTensionVisc,
338       & useAreaViscLength,       & useAreaViscLength,
339       & rigidLid, implicitFreeSurface, exactConserv, uniformLin_PhiSurf,       & rigidLid, implicitFreeSurface, exactConserv, linFSConserveTr,
340         & uniformLin_PhiSurf,
341       & use3Dsolver, implicitIntGravWave, staggerTimeStep,       & use3Dsolver, implicitIntGravWave, staggerTimeStep,
342       & momStepping, tempStepping, saltStepping,       & momStepping, tempStepping, saltStepping,
343       & metricTerms, useNHMTerms,       & metricTerms, useNHMTerms,
# Line 338  C     balancePrintMean:: print substract Line 353  C     balancePrintMean:: print substract
353       & doThetaClimRelax, doSaltClimRelax, doTr1ClimRelax,       & doThetaClimRelax, doSaltClimRelax, doTr1ClimRelax,
354       & periodicExternalForcing,       & periodicExternalForcing,
355       & fluidIsAir, fluidIsWater,       & fluidIsAir, fluidIsWater,
356       & usingPCoords, usingZCoords, useDynP_inEos_Zc, setCenterDr,       & usingPCoords, usingZCoords, useDynP_inEos_Zc,
357       & nonHydrostatic, quasiHydrostatic, globalFiles, useSingleCpuIO,       & nonHydrostatic, quasiHydrostatic, globalFiles, useSingleCpuIO,
358       & allowFreezing, useOldFreezing,       & allowFreezing, useOldFreezing,
359       & usePickupBeforeC35, usePickupBeforeC54, startFromPickupAB2,       & usePickupBeforeC54, startFromPickupAB2,
360       & pickup_read_mdsio, pickup_write_mdsio, pickup_write_immed,       & pickup_read_mdsio, pickup_write_mdsio, pickup_write_immed,
361       & timeave_mdsio, snapshot_mdsio, monitor_stdio,       & timeave_mdsio, snapshot_mdsio, monitor_stdio,
362       & outputTypesInclusive, dumpInitAndLast, debugMode,       & outputTypesInclusive, dumpInitAndLast, debugMode,
# Line 352  C     balancePrintMean:: print substract Line 367  C     balancePrintMean:: print substract
367        LOGICAL usingSphericalPolarGrid        LOGICAL usingSphericalPolarGrid
368        LOGICAL usingCylindricalGrid        LOGICAL usingCylindricalGrid
369        LOGICAL usingCurvilinearGrid        LOGICAL usingCurvilinearGrid
370          LOGICAL deepAtmosphere
371          LOGICAL setInterFDr
372          LOGICAL setCenterDr
373        LOGICAL useNHMTerms        LOGICAL useNHMTerms
374        LOGICAL no_slip_sides        LOGICAL no_slip_sides
375        LOGICAL no_slip_bottom        LOGICAL no_slip_bottom
# Line 372  C     balancePrintMean:: print substract Line 390  C     balancePrintMean:: print substract
390        LOGICAL rigidLid        LOGICAL rigidLid
391        LOGICAL implicitFreeSurface        LOGICAL implicitFreeSurface
392        LOGICAL exactConserv        LOGICAL exactConserv
393          LOGICAL linFSConserveTr
394        LOGICAL uniformLin_PhiSurf        LOGICAL uniformLin_PhiSurf
395        LOGICAL use3Dsolver        LOGICAL use3Dsolver
396        LOGICAL implicitIntGravWave        LOGICAL implicitIntGravWave
# Line 411  C     balancePrintMean:: print substract Line 430  C     balancePrintMean:: print substract
430        LOGICAL usingPCoords        LOGICAL usingPCoords
431        LOGICAL usingZCoords        LOGICAL usingZCoords
432        LOGICAL useDynP_inEos_Zc        LOGICAL useDynP_inEos_Zc
       LOGICAL setCenterDr  
433        LOGICAL nonHydrostatic        LOGICAL nonHydrostatic
434        LOGICAL quasiHydrostatic        LOGICAL quasiHydrostatic
435        LOGICAL globalFiles        LOGICAL globalFiles
436        LOGICAL useSingleCpuIO        LOGICAL useSingleCpuIO
437        LOGICAL allowFreezing        LOGICAL allowFreezing
438        LOGICAL useOldFreezing        LOGICAL useOldFreezing
       LOGICAL usePickupBeforeC35  
439        LOGICAL usePickupBeforeC54        LOGICAL usePickupBeforeC54
440        LOGICAL startFromPickupAB2        LOGICAL startFromPickupAB2
441        LOGICAL dumpInitAndLast        LOGICAL dumpInitAndLast
# Line 462  C     gravity   :: Accel. due to gravity Line 479  C     gravity   :: Accel. due to gravity
479  C     recip_gravity and its inverse  C     recip_gravity and its inverse
480  C     gBaro     :: Accel. due to gravity used in barotropic equation ( m/s^2 )  C     gBaro     :: Accel. due to gravity used in barotropic equation ( m/s^2 )
481  C     rhoNil    :: Reference density for the linear equation of state  C     rhoNil    :: Reference density for the linear equation of state
482  C     rhoConst  :: Vertically constant reference density  C     rhoConst  :: Vertically constant reference density
483    C     rhoFacC   :: normalized (by rhoConst) reference density at cell-Center
484    C     rhoFacF   :: normalized (by rhoConst) reference density at cell-interFace
485  C     rhoConstFresh :: Constant reference density for fresh water (rain)  C     rhoConstFresh :: Constant reference density for fresh water (rain)
486  C     tRef      :: reference vertical profile for potential temperature  C     tRef      :: reference vertical profile for potential temperature
487  C     sRef      :: reference vertical profile for salinity/specific humidity  C     sRef      :: reference vertical profile for salinity/specific humidity
488  C     phiRef    :: reference potential (pressure/rho, geopotential) profile  C     phiRef    :: reference potential (pressure/rho, geopotential) profile
489  C     dBdrRef   :: vertical gradient of reference boyancy  [(m/s/r)^2)]:  C     dBdrRef   :: vertical gradient of reference boyancy  [(m/s/r)^2)]:
490  C               :: z-coord: = N^2_ref = Brunt-Vaissala frequency [s^-2]  C               :: z-coord: = N^2_ref = Brunt-Vaissala frequency [s^-2]
491  C               :: p-coord: = -(d.alpha/dp)_ref          [(m^2.s/kg)^2]  C               :: p-coord: = -(d.alpha/dp)_ref          [(m^2.s/kg)^2]
492    C     rVel2wUnit :: units conversion factor (Non-Hydrostatic code),
493    C                :: from r-coordinate vertical velocity to vertical velocity [m/s].
494    C                :: z-coord: = 1 ; p-coord: wSpeed [m/s] = rVel [Pa/s] * rVel2wUnit
495    C     wUnit2rVel :: units conversion factor (Non-Hydrostatic code),
496    C                :: from vertical velocity [m/s] to r-coordinate vertical velocity.
497    C                :: z-coord: = 1 ; p-coord: rVel [Pa/s] = wSpeed [m/s] * wUnit2rVel
498    C     mass2rUnit :: units conversion factor (surface forcing),
499    C                :: from mass per unit area [kg/m2] to vertical r-coordinate unit.
500    C                :: z-coord: = 1/rhoConst ( [kg/m2] / rho = [m] ) ;
501    C                :: p-coord: = gravity    ( [kg/m2] *  g = [Pa] ) ;
502    C     rUnit2mass :: units conversion factor (surface forcing),
503    C                :: from vertical r-coordinate unit to mass per unit area [kg/m2].
504    C                :: z-coord: = rhoConst  ( [m] * rho = [kg/m2] ) ;
505    C                :: p-coord: = 1/gravity ( [Pa] /  g = [kg/m2] ) ;
506  C     phiMin    :: Latitude of southern most cell face.  C     phiMin    :: Latitude of southern most cell face.
507  C     thetaMin  :: Longitude of western most cell face (this  C     thetaMin  :: Longitude of western most cell face (this
508  C                 is an "inert" parameter but it is included  C                 is an "inert" parameter but it is included
509  C                 to make geographical references simple.)  C                 to make geographical references simple.)
510  C     rSphere   :: Radius of sphere for a spherical polar grid ( m ).  C     rSphere   :: Radius of sphere for a spherical polar grid ( m ).
511  C     recip_RSphere  :: Reciprocal radius of sphere ( m ).  C     recip_rSphere  :: Reciprocal radius of sphere ( m ).
512  C     f0        :: Reference coriolis parameter ( 1/s )  C     f0        :: Reference coriolis parameter ( 1/s )
513  C                 ( Southern edge f for beta plane )  C                 ( Southern edge f for beta plane )
514  C     beta      :: df/dy ( s^-1.m^-1 )  C     beta      :: df/dy ( s^-1.m^-1 )
# Line 539  C     diffKrBL79surf :: T/S surface diff Line 572  C     diffKrBL79surf :: T/S surface diff
572  C     diffKrBL79deep :: T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979  C     diffKrBL79deep :: T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979
573  C     diffKrBL79scl  :: depth scale for arctan fn (m) Bryan and Lewis, 1979  C     diffKrBL79scl  :: depth scale for arctan fn (m) Bryan and Lewis, 1979
574  C     diffKrBL79Ho   :: depth offset for arctan fn (m) Bryan and Lewis, 1979  C     diffKrBL79Ho   :: depth offset for arctan fn (m) Bryan and Lewis, 1979
575    C     BL79LatVary    :: polarwise of this latitude diffKrBL79 is applied with
576    C                       gradual transition to diffKrBLEQ towards Equator
577    C     diffKrBLEQsurf :: same as diffKrBL79surf but at Equator
578    C     diffKrBLEQdeep :: same as diffKrBL79deep but at Equator
579    C     diffKrBLEQscl  :: same as diffKrBL79scl but at Equator
580    C     diffKrBLEQHo   :: same as diffKrBL79Ho but at Equator
581  C     deltaT    :: Default timestep ( s )  C     deltaT    :: Default timestep ( s )
582  C     deltaTClock  :: Timestep used as model "clock". This determines the  C     deltaTClock  :: Timestep used as model "clock". This determines the
583  C                    IO frequencies and is used in tagging output. It can  C                    IO frequencies and is used in tagging output. It can
# Line 605  C     salt_EvPrRn :: salinity of Rain & Line 644  C     salt_EvPrRn :: salinity of Rain &
644  C        (notes: a) tracer content of Rain/Evap only used if both  C        (notes: a) tracer content of Rain/Evap only used if both
645  C                     NonLin_FrSurf & useRealFreshWater are set.  C                     NonLin_FrSurf & useRealFreshWater are set.
646  C                b) use model surface (local) value if set to UNSET_RL)  C                b) use model surface (local) value if set to UNSET_RL)
647  C     horiVertRatio      :: Ratio on units in vertical to units in horizontal.  C     hMixCrit    :: criteria for mixed-layer diagnostic
648  C     recip_horiVertRatio  ( 1 if horiz in m and vertical in m ).  C     ivdc_kappa  :: implicit vertical diffusivity for convection [m^2/s]
649  C                          ( g*rho if horiz in m and vertical in Pa ).  C     Ro_SeaLevel :: standard position of Sea-Level in "R" coordinate, used as
650  C     Ro_SeaLevel        :: standard position of Sea-Level in "R" coordinate, used as  C                    starting value (k=1) for vertical coordinate (rf(1)=Ro_SeaLevel)
 C                          starting value (k=1) for vertical coordinate (rf(1)=Ro_SeaLevel)  
651  C     sideDragFactor     :: side-drag scaling factor (used only if no_slip_sides)  C     sideDragFactor     :: side-drag scaling factor (used only if no_slip_sides)
652  C                           (default=2: full drag ; =1: gives half-slip BC)  C                           (default=2: full drag ; =1: gives half-slip BC)
653  C     bottomDragLinear    :: Linear    bottom-drag coefficient (units of [r]/s)  C     bottomDragLinear    :: Linear    bottom-drag coefficient (units of [r]/s)
# Line 638  C                      (i.e. allows conv Line 676  C                      (i.e. allows conv
676       & diffKhT, diffK4T, diffKrNrT,       & diffKhT, diffK4T, diffKrNrT,
677       & diffKhS, diffK4S, diffKrNrS,       & diffKhS, diffK4S, diffKrNrS,
678       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,
679         & BL79LatVary,
680         & diffKrBLEQsurf, diffKrBLEQdeep, diffKrBLEQscl, diffKrBLEQHo,
681       & delT, tauCD, rCD, freeSurfFac, implicSurfPress, implicDiv2Dflow,       & delT, tauCD, rCD, freeSurfFac, implicSurfPress, implicDiv2Dflow,
682       & hFacMin, hFacMinDz, hFacInf, hFacSup,       & hFacMin, hFacMinDz, hFacInf, hFacSup,
683       & gravity, recip_Gravity, gBaro, rhonil, recip_rhonil,       & gravity, recip_gravity, gBaro,
684       & recip_rhoConst, rhoConst,       & rhonil, recip_rhonil, rhoConst, recip_rhoConst,
685       & rhoConstFresh, convertEmP2rUnit, tRef, sRef, phiRef, dBdrRef,       & rhoFacC, recip_rhoFacC, rhoFacF, recip_rhoFacF,
686         & rhoConstFresh, tRef, sRef, phiRef, dBdrRef,
687         & rVel2wUnit, wUnit2rVel, mass2rUnit, rUnit2mass,
688       & baseTime, startTime, endTime,       & baseTime, startTime, endTime,
689       & chkPtFreq, pChkPtFreq, dumpFreq, adjDumpFreq,       & chkPtFreq, pChkPtFreq, dumpFreq, adjDumpFreq,
690       & diagFreq, taveFreq, tave_lastIter, monitorFreq, adjMonitorFreq,       & diagFreq, taveFreq, tave_lastIter, monitorFreq, adjMonitorFreq,
# Line 653  C                      (i.e. allows conv Line 695  C                      (i.e. allows conv
695       & externForcingCycle, externForcingPeriod,       & externForcingCycle, externForcingPeriod,
696       & convertFW2Salt, temp_EvPrRn, salt_EvPrRn,       & convertFW2Salt, temp_EvPrRn, salt_EvPrRn,
697       & hFacMinDr, hFacMinDp,       & hFacMinDr, hFacMinDp,
698       & horiVertRatio, recip_horiVertRatio,       & ivdc_kappa, hMixCriteria, Ro_SeaLevel,
      & ivdc_kappa, Ro_SeaLevel,  
699       & sideDragFactor, bottomDragLinear, bottomDragQuadratic, nh_Am2,       & sideDragFactor, bottomDragLinear, bottomDragQuadratic, nh_Am2,
700       & smoothAbsFuncRange,       & smoothAbsFuncRange,
701       & tCylIn, tCylOut       & tCylIn, tCylOut
702    
703        _RL cg2dTargetResidual        _RL cg2dTargetResidual
# Line 676  C                      (i.e. allows conv Line 717  C                      (i.e. allows conv
717        _RL phiMin        _RL phiMin
718        _RL thetaMin        _RL thetaMin
719        _RL rSphere        _RL rSphere
720        _RL recip_RSphere        _RL recip_rSphere
721        _RL f0        _RL f0
722        _RL freeSurfFac        _RL freeSurfFac
723        _RL implicSurfPress        _RL implicSurfPress
# Line 721  C                      (i.e. allows conv Line 762  C                      (i.e. allows conv
762        _RL diffKrBL79deep        _RL diffKrBL79deep
763        _RL diffKrBL79scl        _RL diffKrBL79scl
764        _RL diffKrBL79Ho        _RL diffKrBL79Ho
765          _RL BL79LatVary
766          _RL diffKrBLEQsurf
767          _RL diffKrBLEQdeep
768          _RL diffKrBLEQscl
769          _RL diffKrBLEQHo
770        _RL delt        _RL delt
771        _RL tauCD        _RL tauCD
772        _RL rCD        _RL rCD
773        _RL gravity        _RL gravity
774        _RL recip_gravity        _RL recip_gravity
775        _RL gBaro        _RL gBaro
776        _RL rhonil        _RL rhonil,        recip_rhonil
777        _RL recip_rhonil        _RL rhoConst,      recip_rhoConst
778        _RL rhoConst        _RL rhoFacC(Nr),   recip_rhoFacC(Nr)
779        _RL recip_rhoConst        _RL rhoFacF(Nr+1), recip_rhoFacF(Nr+1)
780        _RL rhoConstFresh        _RL rhoConstFresh
       _RL convertEmP2rUnit  
781        _RL tRef(Nr)        _RL tRef(Nr)
782        _RL sRef(Nr)        _RL sRef(Nr)
783        _RL phiRef(2*Nr+1)        _RL phiRef(2*Nr+1)
784        _RL dBdrRef(Nr)        _RL dBdrRef(Nr)
785          _RL rVel2wUnit(Nr+1), wUnit2rVel(Nr+1)
786          _RL mass2rUnit, rUnit2mass
787        _RL baseTime        _RL baseTime
788        _RL startTime        _RL startTime
789        _RL endTime        _RL endTime
# Line 769  C                      (i.e. allows conv Line 816  C                      (i.e. allows conv
816        _RL convertFW2Salt        _RL convertFW2Salt
817        _RL temp_EvPrRn        _RL temp_EvPrRn
818        _RL salt_EvPrRn        _RL salt_EvPrRn
       _RL horiVertRatio  
       _RL recip_horiVertRatio  
819        _RL ivdc_kappa        _RL ivdc_kappa
820          _RL hMixCriteria
821        _RL Ro_SeaLevel        _RL Ro_SeaLevel
822        _RL sideDragFactor        _RL sideDragFactor
823        _RL bottomDragLinear        _RL bottomDragLinear
# Line 812  C Logical flags for selecting packages Line 858  C Logical flags for selecting packages
858        LOGICAL useMY82        LOGICAL useMY82
859        LOGICAL useGGL90        LOGICAL useGGL90
860        LOGICAL useKPP        LOGICAL useKPP
861          LOGICAL useGAD
862        LOGICAL useGMRedi        LOGICAL useGMRedi
863        LOGICAL useOBCS        LOGICAL useOBCS
864        LOGICAL useAIM        LOGICAL useAIM
# Line 833  C Logical flags for selecting packages Line 880  C Logical flags for selecting packages
880        LOGICAL useSEAICE        LOGICAL useSEAICE
881        LOGICAL useShelfIce        LOGICAL useShelfIce
882        LOGICAL useThSIce        LOGICAL useThSIce
883          LOGICAL useATM2d
884        LOGICAL useBulkForce        LOGICAL useBulkForce
885        LOGICAL usefizhi        LOGICAL usefizhi
886        LOGICAL usegridalt        LOGICAL usegridalt
# Line 844  C Logical flags for selecting packages Line 892  C Logical flags for selecting packages
892        LOGICAL useMYPACKAGE        LOGICAL useMYPACKAGE
893        COMMON /PARM_PACKAGES/        COMMON /PARM_PACKAGES/
894       &        useOPPS, usePP81, useMY82, useGGL90, useKPP,       &        useOPPS, usePP81, useMY82, useGGL90, useKPP,
895       &        useGMRedi, useOBCS, useAIM, useLand,       &        useGAD, useGMRedi, useOBCS, useAIM, useLand,
896       &        useCAL, useEXF, useEBM, useGrdchk, useECCO,       &        useCAL, useEXF, useEBM, useGrdchk, useECCO,
897       &        useSHAP_FILT, useZONAL_FILT, useFLT,       &        useSHAP_FILT, useZONAL_FILT, useFLT,
898       &        usePTRACERS, useGCHEM, useRBCS, useOffLine, useMATRIX,       &        usePTRACERS, useGCHEM, useRBCS, useOffLine, useMATRIX,
899       &        useSBO, useSEAICE, useShelfIce, useThSIce, useBulkForce,       &        useSBO, useSEAICE, useShelfIce,
900         &        useThSIce, useATM2D, useBulkForce,
901       &        usefizhi, usegridalt, useDiagnostics, useMNC, useREGRID,       &        usefizhi, usegridalt, useDiagnostics, useMNC, useREGRID,
902       &        useRunClock, useEMBED_FILES, useMYPACKAGE       &        useRunClock, useEMBED_FILES, useMYPACKAGE
903    

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