/[MITgcm]/MITgcm/model/inc/PARAMS.h
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revision 1.248 by jmc, Thu Mar 3 19:55:56 2011 UTC revision 1.261 by jmc, Fri Jun 15 13:17:34 2012 UTC
# Line 64  C     viscA4Zfile     :: File containing Line 64  C     viscA4Zfile     :: File containing
64  C     zonalWindFile   :: File containing zonal wind data  C     zonalWindFile   :: File containing zonal wind data
65  C     meridWindFile   :: File containing meridional wind data  C     meridWindFile   :: File containing meridional wind data
66  C     thetaClimFile   :: File containing surface theta climataology used  C     thetaClimFile   :: File containing surface theta climataology used
67  C                       in relaxation term -lambda(theta-theta*)  C                        in relaxation term -lambda(theta-theta*)
68  C     saltClimFile    :: File containing surface salt climataology used  C     saltClimFile    :: File containing surface salt climataology used
69  C                       in relaxation term -lambda(salt-salt*)  C                        in relaxation term -lambda(salt-salt*)
70  C     surfQfile       :: File containing surface heat flux, excluding SW  C     surfQfile       :: File containing surface heat flux, excluding SW
71  C                        (old version, kept for backward compatibility)  C                        (old version, kept for backward compatibility)
72  C     surfQnetFile    :: File containing surface net heat flux  C     surfQnetFile    :: File containing surface net heat flux
# Line 143  C     the_run_name    :: string identify Line 143  C     the_run_name    :: string identify
143    
144  C--   COMMON /PARM_I/ Integer valued parameters used by the model.  C--   COMMON /PARM_I/ Integer valued parameters used by the model.
145  C     cg2dMaxIters        :: Maximum number of iterations in the  C     cg2dMaxIters        :: Maximum number of iterations in the
146  C                           two-dimensional con. grad solver.  C                            two-dimensional con. grad solver.
147  C     cg2dChkResFreq      :: Frequency with which to check residual  C     cg2dChkResFreq      :: Frequency with which to check residual
148  C                           in con. grad solver.  C                            in con. grad solver.
149  C     cg2dPreCondFreq     :: Frequency for updating cg2d preconditioner  C     cg2dPreCondFreq     :: Frequency for updating cg2d preconditioner
150  C                            (non-linear free-surf.)  C                            (non-linear free-surf.)
151  C     cg3dMaxIters        :: Maximum number of iterations in the  C     cg3dMaxIters        :: Maximum number of iterations in the
152  C                           three-dimensional con. grad solver.  C                            three-dimensional con. grad solver.
153  C     cg3dChkResFreq      :: Frequency with which to check residual  C     cg3dChkResFreq      :: Frequency with which to check residual
154  C                           in con. grad solver.  C                            in con. grad solver.
155    C     printResidualFreq   :: Frequency for printing residual in CG iterations
156  C     nIter0              :: Start time-step number of for this run  C     nIter0              :: Start time-step number of for this run
157  C     nTimeSteps          :: Number of timesteps to execute  C     nTimeSteps          :: Number of timesteps to execute
158  C     writeStatePrec      :: Precision used for writing model state.  C     writeStatePrec      :: Precision used for writing model state.
# Line 173  C     selectAddFluid      :: option to a Line 174  C     selectAddFluid      :: option to a
174  C                            (3-D generalisation of oceanic real-fresh water flux)  C                            (3-D generalisation of oceanic real-fresh water flux)
175  C                           =0 off ; =1 add fluid ; =-1 virtual flux (no mass added)  C                           =0 off ; =1 add fluid ; =-1 virtual flux (no mass added)
176  C     momForcingOutAB     :: =1: take momentum forcing contribution  C     momForcingOutAB     :: =1: take momentum forcing contribution
177  C                           out of (=0: in) Adams-Bashforth time stepping.  C                            out of (=0: in) Adams-Bashforth time stepping.
178  C     tracForcingOutAB    :: =1: take tracer (Temp,Salt,pTracers) forcing contribution  C     tracForcingOutAB    :: =1: take tracer (Temp,Salt,pTracers) forcing contribution
179  C                           out of (=0: in) Adams-Bashforth time stepping.  C                            out of (=0: in) Adams-Bashforth time stepping.
180  C     tempAdvScheme       :: Temp. Horiz.Advection scheme selector  C     tempAdvScheme       :: Temp. Horiz.Advection scheme selector
181  C     tempVertAdvScheme   :: Temp. Vert. Advection scheme selector  C     tempVertAdvScheme   :: Temp. Vert. Advection scheme selector
182  C     saltAdvScheme       :: Salt. Horiz.advection scheme selector  C     saltAdvScheme       :: Salt. Horiz.advection scheme selector
# Line 188  C-    debugLevel          :: controls pr Line 189  C-    debugLevel          :: controls pr
189  C                            and statistics ; higher -> more writing  C                            and statistics ; higher -> more writing
190    
191        COMMON /PARM_I/        COMMON /PARM_I/
192       &        cg2dMaxIters,       &        cg2dMaxIters, cg2dChkResFreq, cg2dPreCondFreq,
193       &        cg2dChkResFreq, cg2dPreCondFreq,       &        cg3dMaxIters, cg3dChkResFreq,
194       &        cg3dMaxIters,       &        printResidualFreq,
      &        cg3dChkResFreq,  
195       &        nIter0, nTimeSteps, nEndIter,       &        nIter0, nTimeSteps, nEndIter,
196       &        writeStatePrec,       &        writeStatePrec,
197       &        writeBinaryPrec, readBinaryPrec,       &        writeBinaryPrec, readBinaryPrec,
# Line 210  C                            and statist Line 210  C                            and statist
210        INTEGER cg2dPreCondFreq        INTEGER cg2dPreCondFreq
211        INTEGER cg3dMaxIters        INTEGER cg3dMaxIters
212        INTEGER cg3dChkResFreq        INTEGER cg3dChkResFreq
213          INTEGER printResidualFreq
214        INTEGER nIter0        INTEGER nIter0
215        INTEGER nTimeSteps        INTEGER nTimeSteps
216        INTEGER nEndIter        INTEGER nEndIter
# Line 233  C                            and statist Line 234  C                            and statist
234  C--   COMMON /PARM_L/ Logical valued parameters used by the model.  C--   COMMON /PARM_L/ Logical valued parameters used by the model.
235  C- Coordinate + Grid params:  C- Coordinate + Grid params:
236  C     fluidIsAir       :: Set to indicate that the fluid major constituent  C     fluidIsAir       :: Set to indicate that the fluid major constituent
237  C                        is air  C                         is air
238  C     fluidIsWater     :: Set to indicate that the fluid major constituent  C     fluidIsWater     :: Set to indicate that the fluid major constituent
239  C                        is water  C                         is water
240  C     usingPCoords     :: Set to indicate that we are working in a pressure  C     usingPCoords     :: Set to indicate that we are working in a pressure
241  C                        type coordinate (p or p*).  C                         type coordinate (p or p*).
242  C     usingZCoords     :: Set to indicate that we are working in a height  C     usingZCoords     :: Set to indicate that we are working in a height
243  C                        type coordinate (z or z*)  C                         type coordinate (z or z*)
244  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)  C     useDynP_inEos_Zc   :: use the dynamical pressure in EOS (with Z-coord.)
245  C                         this requires specific code for restart & exchange  C                           this requires specific code for restart & exchange
246  C     usingCartesianGrid :: If TRUE grid generation will be in a cartesian  C     usingCartesianGrid :: If TRUE grid generation will be in a cartesian
247  C                          coordinate frame.  C                           coordinate frame.
248  C     usingSphericalPolarGrid :: If TRUE grid generation will be in a  C     usingSphericalPolarGrid :: If TRUE grid generation will be in a
249  C                               spherical polar frame.  C                                spherical polar frame.
250  C     rotateGrid      :: rotate grid coordinates to geographical coordinates  C     rotateGrid      :: rotate grid coordinates to geographical coordinates
251  C                        according to Euler angles phiEuler, thetaEuler, psiEuler  C                        according to Euler angles phiEuler, thetaEuler, psiEuler
252  C     usingCurvilinearGrid :: If TRUE, use a curvilinear grid (to be provided)  C     usingCurvilinearGrid :: If TRUE, use a curvilinear grid (to be provided)
# Line 281  C     highOrderVorticity :: use 3rd/4th Line 282  C     highOrderVorticity :: use 3rd/4th
282  C     useAbsVorticity :: work with f+zeta in Coriolis terms  C     useAbsVorticity :: work with f+zeta in Coriolis terms
283  C     upwindShear        :: use 1rst order upwind interp. (V.I., vertical advection)  C     upwindShear        :: use 1rst order upwind interp. (V.I., vertical advection)
284  C     momStepping    :: Turns momentum equation time-stepping off  C     momStepping    :: Turns momentum equation time-stepping off
285    C     calc_wVelocity :: Turns of vertical velocity calculation off
286  C- Temp. & Salt params:  C- Temp. & Salt params:
287  C     tempStepping   :: Turns temperature equation time-stepping off  C     tempStepping   :: Turns temperature equation time-stepping off
288  C     saltStepping   :: Turns salinity equation time-stepping off  C     saltStepping   :: Turns salinity equation time-stepping off
289  C     tempAdvection  :: Flag which turns advection of temperature on and off.  C     tempAdvection  :: Flag which turns advection of temperature on and off.
290    C     tempVertDiff4  :: use vertical bi-harmonic diffusion for temperature
291  C     tempIsActiveTr :: Pot.Temp. is a dynamically active tracer  C     tempIsActiveTr :: Pot.Temp. is a dynamically active tracer
292  C     tempForcing    :: Flag which turns external forcing of temperature on  C     tempForcing    :: Flag which turns external forcing of temperature on
293  C                       and off.  C                       and off.
294  C     saltAdvection  :: Flag which turns advection of salinity on and off.  C     saltAdvection  :: Flag which turns advection of salinity on and off.
295    C     saltVertDiff4  :: use vertical bi-harmonic diffusion for salinity
296  C     saltIsActiveTr :: Salinity  is a dynamically active tracer  C     saltIsActiveTr :: Salinity  is a dynamically active tracer
297  C     saltForcing    :: Flag which turns external forcing of salinity on  C     saltForcing    :: Flag which turns external forcing of salinity on
298  C                       and off.  C                       and off.
# Line 296  C     maskIniTemp    :: apply mask to in Line 300  C     maskIniTemp    :: apply mask to in
300  C     maskIniSalt    :: apply mask to initial salinity  C     maskIniSalt    :: apply mask to initial salinity
301  C     checkIniTemp   :: check for points with identically zero initial Pot.Temp.  C     checkIniTemp   :: check for points with identically zero initial Pot.Temp.
302  C     checkIniSalt   :: check for points with identically zero initial salinity  C     checkIniSalt   :: check for points with identically zero initial salinity
 C     useRealFreshWaterFlux :: if True (=Natural BCS), treats P+R-E flux  
 C                         as a real Fresh Water (=> changes the Sea Level)  
 C                         if F, converts P+R-E to salt flux (no SL effect)  
303  C- Pressure solver related parameters (PARM02)  C- Pressure solver related parameters (PARM02)
304  C     useSRCGSolver  :: Set to true to use conjugate gradient  C     useSRCGSolver  :: Set to true to use conjugate gradient
305  C                       solver with single reduction (only one call of  C                       solver with single reduction (only one call of
306  C                       s/r mpi_allreduce), default is false  C                       s/r mpi_allreduce), default is false
307  C- Time-stepping params:  C- Time-stepping & free-surface params:
308  C     rigidLid            :: Set to true to use rigid lid  C     rigidLid            :: Set to true to use rigid lid
309  C     implicitFreeSurface :: Set to true to use implicit free surface  C     implicitFreeSurface :: Set to true to use implicit free surface
310    C     uniformLin_PhiSurf  :: Set to true to use a uniform Bo_surf in the
311    C                            linear relation Phi_surf = Bo_surf*eta
312    C     uniformFreeSurfLev  :: TRUE if free-surface level-index is uniform (=1)
313  C     exactConserv        :: Set to true to conserve exactly the total Volume  C     exactConserv        :: Set to true to conserve exactly the total Volume
314  C     linFSConserveTr     :: Set to true to correct source/sink of tracer  C     linFSConserveTr     :: Set to true to correct source/sink of tracer
315  C                            at the surface due to Linear Free Surface  C                            at the surface due to Linear Free Surface
316  C     uniformLin_PhiSurf  :: Set to true to use a uniform Bo_surf in the  C     useRealFreshWaterFlux :: if True (=Natural BCS), treats P+R-E flux
317  C                            linear relation Phi_surf = Bo_surf*eta  C                         as a real Fresh Water (=> changes the Sea Level)
318    C                         if F, converts P+R-E to salt flux (no SL effect)
319  C     quasiHydrostatic :: Using non-hydrostatic terms in hydrostatic algorithm  C     quasiHydrostatic :: Using non-hydrostatic terms in hydrostatic algorithm
320  C     nonHydrostatic   :: Using non-hydrostatic algorithm  C     nonHydrostatic   :: Using non-hydrostatic algorithm
321  C     use3Dsolver      :: set to true to use 3-D pressure solver  C     use3Dsolver      :: set to true to use 3-D pressure solver
322  C     implicitIntGravWave :: treat Internal Gravity Wave implicitly  C     implicitIntGravWave :: treat Internal Gravity Wave implicitly
323  C     staggerTimeStep   :: enable a Stagger time stepping U,V (& W) then T,S  C     staggerTimeStep   :: enable a Stagger time stepping U,V (& W) then T,S
324    C     doResetHFactors   :: Do reset thickness factors @ beginning of each time-step
325  C     implicitDiffusion :: Turns implicit vertical diffusion on  C     implicitDiffusion :: Turns implicit vertical diffusion on
326  C     implicitViscosity :: Turns implicit vertical viscosity on  C     implicitViscosity :: Turns implicit vertical viscosity on
327  C     tempImplVertAdv :: Turns on implicit vertical advection for Temperature  C     tempImplVertAdv :: Turns on implicit vertical advection for Temperature
# Line 356  C     snapshot_mdsio     :: use mdsio fo Line 362  C     snapshot_mdsio     :: use mdsio fo
362  C     monitor_stdio      :: use stdio for monitor output  C     monitor_stdio      :: use stdio for monitor output
363  C     dumpInitAndLast :: dumps model state to files at Initial (nIter0)  C     dumpInitAndLast :: dumps model state to files at Initial (nIter0)
364  C                        & Last iteration, in addition multiple of dumpFreq iter.  C                        & Last iteration, in addition multiple of dumpFreq iter.
 C     debugMode       :: controls printing of debug msg (sequence of S/R calls).  
365  C     printDomain     :: controls printing of domain fields (bathy, hFac ...).  C     printDomain     :: controls printing of domain fields (bathy, hFac ...).
366    
367        COMMON /PARM_L/        COMMON /PARM_L/
# Line 374  C     printDomain     :: controls printi Line 379  C     printDomain     :: controls printi
379       & useEnergyConservingCoriolis, useJamartWetPoints, useJamartMomAdv,       & useEnergyConservingCoriolis, useJamartWetPoints, useJamartMomAdv,
380       & upwindVorticity, highOrderVorticity,       & upwindVorticity, highOrderVorticity,
381       & useAbsVorticity, upwindShear,       & useAbsVorticity, upwindShear,
382       & momStepping, tempStepping, saltStepping,       & momStepping, calc_wVelocity, tempStepping, saltStepping,
383       & tempAdvection, tempIsActiveTr, tempForcing,       & tempAdvection, tempVertDiff4, tempIsActiveTr, tempForcing,
384       & saltAdvection, saltIsActiveTr, saltForcing,       & saltAdvection, saltVertDiff4, saltIsActiveTr, saltForcing,
385       & maskIniTemp, maskIniSalt, checkIniTemp, checkIniSalt,       & maskIniTemp, maskIniSalt, checkIniTemp, checkIniSalt,
386       & useRealFreshWaterFlux, useSRCGSolver,       & useSRCGSolver,
387       & rigidLid, implicitFreeSurface, exactConserv, linFSConserveTr,       & rigidLid, implicitFreeSurface,
388       & uniformLin_PhiSurf,       & uniformLin_PhiSurf, uniformFreeSurfLev,
389       & quasiHydrostatic, nonHydrostatic,       & exactConserv, linFSConserveTr, useRealFreshWaterFlux,
390       & use3Dsolver, implicitIntGravWave, staggerTimeStep,       & quasiHydrostatic, nonHydrostatic, use3Dsolver,
391         & implicitIntGravWave, staggerTimeStep, doResetHFactors,
392       & implicitDiffusion, implicitViscosity,       & implicitDiffusion, implicitViscosity,
393       & tempImplVertAdv, saltImplVertAdv, momImplVertAdv,       & tempImplVertAdv, saltImplVertAdv, momImplVertAdv,
394       & multiDimAdvection, useMultiDimAdvec,       & multiDimAdvection, useMultiDimAdvec,
# Line 397  C     printDomain     :: controls printi Line 403  C     printDomain     :: controls printi
403       & writePickupAtEnd,       & writePickupAtEnd,
404       & timeave_mdsio, snapshot_mdsio, monitor_stdio,       & timeave_mdsio, snapshot_mdsio, monitor_stdio,
405       & outputTypesInclusive, dumpInitAndLast,       & outputTypesInclusive, dumpInitAndLast,
406       & debugMode, printDomain,       & printDomain,
407       & inAdMode, inAdTrue, inAdFalse, inAdExact       & inAdMode, inAdTrue, inAdFalse, inAdExact
408    
409        LOGICAL fluidIsAir        LOGICAL fluidIsAir
# Line 425  C     printDomain     :: controls printi Line 431  C     printDomain     :: controls printi
431        LOGICAL useCoriolis        LOGICAL useCoriolis
432        LOGICAL vectorInvariantMomentum        LOGICAL vectorInvariantMomentum
433        LOGICAL tempAdvection        LOGICAL tempAdvection
434          LOGICAL tempVertDiff4
435        LOGICAL tempIsActiveTr        LOGICAL tempIsActiveTr
436        LOGICAL tempForcing        LOGICAL tempForcing
437        LOGICAL saltAdvection        LOGICAL saltAdvection
438          LOGICAL saltVertDiff4
439        LOGICAL saltIsActiveTr        LOGICAL saltIsActiveTr
440        LOGICAL saltForcing        LOGICAL saltForcing
441        LOGICAL maskIniTemp        LOGICAL maskIniTemp
442        LOGICAL maskIniSalt        LOGICAL maskIniSalt
443        LOGICAL checkIniTemp        LOGICAL checkIniTemp
444        LOGICAL checkIniSalt        LOGICAL checkIniSalt
       LOGICAL useRealFreshWaterFlux  
445        LOGICAL useSRCGSolver        LOGICAL useSRCGSolver
446        LOGICAL rigidLid        LOGICAL rigidLid
447        LOGICAL implicitFreeSurface        LOGICAL implicitFreeSurface
448          LOGICAL uniformLin_PhiSurf
449          LOGICAL uniformFreeSurfLev
450        LOGICAL exactConserv        LOGICAL exactConserv
451        LOGICAL linFSConserveTr        LOGICAL linFSConserveTr
452        LOGICAL uniformLin_PhiSurf        LOGICAL useRealFreshWaterFlux
453        LOGICAL quasiHydrostatic        LOGICAL quasiHydrostatic
454        LOGICAL nonHydrostatic        LOGICAL nonHydrostatic
455        LOGICAL use3Dsolver        LOGICAL use3Dsolver
456        LOGICAL implicitIntGravWave        LOGICAL implicitIntGravWave
457        LOGICAL staggerTimeStep        LOGICAL staggerTimeStep
458          LOGICAL doResetHFactors
459        LOGICAL momStepping        LOGICAL momStepping
460          LOGICAL calc_wVelocity
461        LOGICAL tempStepping        LOGICAL tempStepping
462        LOGICAL saltStepping        LOGICAL saltStepping
463        LOGICAL metricTerms        LOGICAL metricTerms
# Line 485  C     printDomain     :: controls printi Line 496  C     printDomain     :: controls printi
496        LOGICAL timeave_mdsio, snapshot_mdsio, monitor_stdio        LOGICAL timeave_mdsio, snapshot_mdsio, monitor_stdio
497        LOGICAL outputTypesInclusive        LOGICAL outputTypesInclusive
498        LOGICAL dumpInitAndLast        LOGICAL dumpInitAndLast
499        LOGICAL debugMode, printDomain        LOGICAL printDomain
500        LOGICAL inAdMode, inAdTrue, inAdFalse, inAdExact        LOGICAL inAdMode, inAdTrue, inAdFalse, inAdExact
501    
502  C--   COMMON /PARM_R/ "Real" valued parameters used by the model.  C--   COMMON /PARM_R/ "Real" valued parameters used by the model.
# Line 512  C           defaults to 0.51 but can be Line 523  C           defaults to 0.51 but can be
523  C     delR      :: Vertical grid spacing ( units of r ).  C     delR      :: Vertical grid spacing ( units of r ).
524  C     delRc     :: Vertical grid spacing between cell centers (r unit).  C     delRc     :: Vertical grid spacing between cell centers (r unit).
525  C     delX      :: Separation between cell faces (m) or (deg), depending  C     delX      :: Separation between cell faces (m) or (deg), depending
526  C     delY        on input flags.  C     delY         on input flags. Note: moved to header file SET_GRID.h
527  C     xgOrigin   :: Origin of the X-axis (Cartesian Grid) / Longitude of Western  C     xgOrigin   :: Origin of the X-axis (Cartesian Grid) / Longitude of Western
528  C                :: most cell face (Lat-Lon grid) (Note: this is an "inert"  C                :: most cell face (Lat-Lon grid) (Note: this is an "inert"
529  C                :: parameter but it makes geographical references simple.)  C                :: parameter but it makes geographical references simple.)
# Line 522  C     gravity   :: Accel. due to gravity Line 533  C     gravity   :: Accel. due to gravity
533  C     recip_gravity and its inverse  C     recip_gravity and its inverse
534  C     gBaro     :: Accel. due to gravity used in barotropic equation ( m/s^2 )  C     gBaro     :: Accel. due to gravity used in barotropic equation ( m/s^2 )
535  C     rhoNil    :: Reference density for the linear equation of state  C     rhoNil    :: Reference density for the linear equation of state
536  C     rhoConst  :: Vertically constant reference density  C     rhoConst  :: Vertically constant reference density (Boussinesq)
537  C     rhoFacC   :: normalized (by rhoConst) reference density at cell-Center  C     rhoFacC   :: normalized (by rhoConst) reference density at cell-Center
538  C     rhoFacF   :: normalized (by rhoConst) reference density at cell-interFace  C     rhoFacF   :: normalized (by rhoConst) reference density at cell-interFace
539  C     rhoConstFresh :: Constant reference density for fresh water (rain)  C     rhoConstFresh :: Constant reference density for fresh water (rain)
# Line 601  C     viscA4GridMax:: maximum and minimu Line 612  C     viscA4GridMax:: maximum and minimu
612  C     viscA4GridMin::  in terms of non-dimensional grid-size dependent viscosity  C     viscA4GridMin::  in terms of non-dimensional grid-size dependent viscosity
613  C     diffKhT   :: Laplacian diffusion coeff. for mixing of  C     diffKhT   :: Laplacian diffusion coeff. for mixing of
614  C                 heat laterally ( m^2/s )  C                 heat laterally ( m^2/s )
 C     diffKrNrT :: vertical profile of Laplacian diffusion coeff.  
 C                 for mixing of heat vertically ( units of r^2/s )  
615  C     diffK4T   :: Biharmonic diffusion coeff. for mixing of  C     diffK4T   :: Biharmonic diffusion coeff. for mixing of
616  C                 heat laterally ( m^4/s )  C                 heat laterally ( m^4/s )
617    C     diffKrNrT :: vertical profile of Laplacian diffusion coeff.
618    C                 for mixing of heat vertically ( units of r^2/s )
619    C     diffKr4T  :: vertical profile of Biharmonic diffusion coeff.
620    C                 for mixing of heat vertically ( units of r^4/s )
621  C     diffKhS  ::  Laplacian diffusion coeff. for mixing of  C     diffKhS  ::  Laplacian diffusion coeff. for mixing of
622  C                 salt laterally ( m^2/s )  C                 salt laterally ( m^2/s )
 C     diffKrNrS :: vertical profile of Laplacian diffusion coeff.  
 C                 for mixing of salt vertically ( units of r^2/s ),  
623  C     diffK4S   :: Biharmonic diffusion coeff. for mixing of  C     diffK4S   :: Biharmonic diffusion coeff. for mixing of
624  C                 salt laterally ( m^4/s )  C                 salt laterally ( m^4/s )
625    C     diffKrNrS :: vertical profile of Laplacian diffusion coeff.
626    C                 for mixing of salt vertically ( units of r^2/s ),
627    C     diffKr4S  :: vertical profile of Biharmonic diffusion coeff.
628    C                 for mixing of salt vertically ( units of r^4/s )
629  C     diffKrBL79surf :: T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979  C     diffKrBL79surf :: T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979
630  C     diffKrBL79deep :: T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979  C     diffKrBL79deep :: T/S deep diffusivity (m^2/s) Bryan and Lewis, 1979
631  C     diffKrBL79scl  :: depth scale for arctan fn (m) Bryan and Lewis, 1979  C     diffKrBL79scl  :: depth scale for arctan fn (m) Bryan and Lewis, 1979
# Line 631  C                    are referenced to t Line 646  C                    are referenced to t
646  C     deltaTMom    :: Timestep for momemtum equations ( s )  C     deltaTMom    :: Timestep for momemtum equations ( s )
647  C     dTtracerLev  :: Timestep for tracer equations ( s ), function of level k  C     dTtracerLev  :: Timestep for tracer equations ( s ), function of level k
648  C     deltaTfreesurf :: Timestep for free-surface equation ( s )  C     deltaTfreesurf :: Timestep for free-surface equation ( s )
649  C     freesurfFac  :: Parameter to turn implicit free surface term on or off  C     freeSurfFac  :: Parameter to turn implicit free surface term on or off
650  C                    freesurfac = 1. uses implicit free surface  C                     freeSurFac = 1. uses implicit free surface
651  C                    freesurfac = 0. uses rigid lid  C                     freeSurFac = 0. uses rigid lid
652  C     abEps        :: Adams-Bashforth-2 stabilizing weight  C     abEps        :: Adams-Bashforth-2 stabilizing weight
653  C     alph_AB      :: Adams-Bashforth-3 primary factor  C     alph_AB      :: Adams-Bashforth-3 primary factor
654  C     beta_AB      :: Adams-Bashforth-3 secondary factor  C     beta_AB      :: Adams-Bashforth-3 secondary factor
# Line 658  C     endTime       :: Ending time for t Line 673  C     endTime       :: Ending time for t
673  C     chkPtFreq     :: Frequency of rolling check pointing ( s ).  C     chkPtFreq     :: Frequency of rolling check pointing ( s ).
674  C     pChkPtFreq    :: Frequency of permanent check pointing ( s ).  C     pChkPtFreq    :: Frequency of permanent check pointing ( s ).
675  C     dumpFreq      :: Frequency with which model state is written to  C     dumpFreq      :: Frequency with which model state is written to
676  C                     post-processing files ( s ).  C                      post-processing files ( s ).
677  C     diagFreq      :: Frequency with which model writes diagnostic output  C     diagFreq      :: Frequency with which model writes diagnostic output
678  C                     of intermediate quantities.  C                      of intermediate quantities.
679  C     afFacMom      :: Advection of momentum term tracer parameter  C     afFacMom      :: Advection of momentum term tracer parameter
680  C     vfFacMom      :: Momentum viscosity tracer parameter  C     vfFacMom      :: Momentum viscosity tracer parameter
681  C     pfFacMom      :: Momentum pressure forcing tracer parameter  C     pfFacMom      :: Momentum pressure forcing tracer parameter
# Line 714  C     thetaEuler    :: Euler angle, rota Line 729  C     thetaEuler    :: Euler angle, rota
729  C     psiEuler      :: Euler angle, rotation about new z-axis  C     psiEuler      :: Euler angle, rotation about new z-axis
730        COMMON /PARM_R/ cg2dTargetResidual, cg2dTargetResWunit,        COMMON /PARM_R/ cg2dTargetResidual, cg2dTargetResWunit,
731       & cg2dpcOffDFac, cg3dTargetResidual,       & cg2dpcOffDFac, cg3dTargetResidual,
732       & delR, delRc, delX, delY, xgOrigin, ygOrigin,       & delR, delRc, xgOrigin, ygOrigin,
733       & deltaT, deltaTmom, dTtracerLev, deltaTfreesurf, deltaTClock,       & deltaT, deltaTmom, dTtracerLev, deltaTfreesurf, deltaTClock,
734       & abEps, alph_AB, beta_AB,       & abEps, alph_AB, beta_AB,
735       & rSphere, recip_rSphere, radius_fromHorizGrid,       & rSphere, recip_rSphere, radius_fromHorizGrid,
# Line 728  C     psiEuler      :: Euler angle, rota Line 743  C     psiEuler      :: Euler angle, rota
743       & viscA4Grid, viscA4GridMax, viscA4GridMin,       & viscA4Grid, viscA4GridMax, viscA4GridMin,
744       & viscAhReMax, viscA4ReMax,       & viscAhReMax, viscA4ReMax,
745       & viscC4leith, viscC4leithD, viscArNr,       & viscC4leith, viscC4leithD, viscArNr,
746       & diffKhT, diffK4T, diffKrNrT,       & diffKhT, diffK4T, diffKrNrT, diffKr4T,
747       & diffKhS, diffK4S, diffKrNrS,       & diffKhS, diffK4S, diffKrNrS, diffKr4S,
748       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,
749       & BL79LatVary,       & BL79LatVary,
750       & diffKrBLEQsurf, diffKrBLEQdeep, diffKrBLEQscl, diffKrBLEQHo,       & diffKrBLEQsurf, diffKrBLEQdeep, diffKrBLEQscl, diffKrBLEQHo,
# Line 737  C     psiEuler      :: Euler angle, rota Line 752  C     psiEuler      :: Euler angle, rota
752       & freeSurfFac, implicSurfPress, implicDiv2Dflow, implicitNHPress,       & freeSurfFac, implicSurfPress, implicDiv2Dflow, implicitNHPress,
753       & hFacMin, hFacMinDz, hFacInf, hFacSup,       & hFacMin, hFacMinDz, hFacInf, hFacSup,
754       & gravity, recip_gravity, gBaro,       & gravity, recip_gravity, gBaro,
755       & rhonil, recip_rhonil, rhoConst, recip_rhoConst,       & rhoNil, rhoConst, recip_rhoConst,
756       & rhoFacC, recip_rhoFacC, rhoFacF, recip_rhoFacF,       & rhoFacC, recip_rhoFacC, rhoFacF, recip_rhoFacF,
757       & rhoConstFresh, rho1Ref, tRef, sRef, phiRef, dBdrRef,       & rhoConstFresh, rho1Ref, tRef, sRef, phiRef, dBdrRef,
758       & rVel2wUnit, wUnit2rVel, mass2rUnit, rUnit2mass,       & rVel2wUnit, wUnit2rVel, mass2rUnit, rUnit2mass,
# Line 763  C     psiEuler      :: Euler angle, rota Line 778  C     psiEuler      :: Euler angle, rota
778        _RL cg2dpcOffDFac        _RL cg2dpcOffDFac
779        _RL delR(Nr)        _RL delR(Nr)
780        _RL delRc(Nr+1)        _RL delRc(Nr+1)
       _RL delX(Nx)  
       _RL delY(Ny)  
781        _RL xgOrigin        _RL xgOrigin
782        _RL ygOrigin        _RL ygOrigin
783        _RL deltaT        _RL deltaT
# Line 814  C     psiEuler      :: Euler angle, rota Line 827  C     psiEuler      :: Euler angle, rota
827        _RL viscC4leithD        _RL viscC4leithD
828        _RL viscC4smag        _RL viscC4smag
829        _RL diffKhT        _RL diffKhT
       _RL diffKrNrT(Nr)  
830        _RL diffK4T        _RL diffK4T
831          _RL diffKrNrT(Nr)
832          _RL diffKr4T(Nr)
833        _RL diffKhS        _RL diffKhS
       _RL diffKrNrS(Nr)  
834        _RL diffK4S        _RL diffK4S
835          _RL diffKrNrS(Nr)
836          _RL diffKr4S(Nr)
837        _RL diffKrBL79surf        _RL diffKrBL79surf
838        _RL diffKrBL79deep        _RL diffKrBL79deep
839        _RL diffKrBL79scl        _RL diffKrBL79scl
# Line 832  C     psiEuler      :: Euler angle, rota Line 847  C     psiEuler      :: Euler angle, rota
847        _RL gravity        _RL gravity
848        _RL recip_gravity        _RL recip_gravity
849        _RL gBaro        _RL gBaro
850        _RL rhonil,        recip_rhonil        _RL rhoNil
851        _RL rhoConst,      recip_rhoConst        _RL rhoConst,      recip_rhoConst
852        _RL rhoFacC(Nr),   recip_rhoFacC(Nr)        _RL rhoFacC(Nr),   recip_rhoFacC(Nr)
853        _RL rhoFacF(Nr+1), recip_rhoFacF(Nr+1)        _RL rhoFacF(Nr+1), recip_rhoFacF(Nr+1)
# Line 926  C Logical flags for selecting packages Line 941  C Logical flags for selecting packages
941        LOGICAL useKPP        LOGICAL useKPP
942        LOGICAL useGMRedi        LOGICAL useGMRedi
943        LOGICAL useDOWN_SLOPE        LOGICAL useDOWN_SLOPE
944          LOGICAL useBBL
945        LOGICAL useCAL        LOGICAL useCAL
946        LOGICAL useEXF        LOGICAL useEXF
947        LOGICAL useBulkForce        LOGICAL useBulkForce
# Line 941  C Logical flags for selecting packages Line 957  C Logical flags for selecting packages
957        LOGICAL useRBCS        LOGICAL useRBCS
958        LOGICAL useOffLine        LOGICAL useOffLine
959        LOGICAL useMATRIX        LOGICAL useMATRIX
960          LOGICAL useFRAZIL
961        LOGICAL useSEAICE        LOGICAL useSEAICE
962        LOGICAL useSALT_PLUME        LOGICAL useSALT_PLUME
963        LOGICAL useShelfIce        LOGICAL useShelfIce
964          LOGICAL useStreamIce
965        LOGICAL useICEFRONT        LOGICAL useICEFRONT
966        LOGICAL useThSIce        LOGICAL useThSIce
967        LOGICAL useATM2d        LOGICAL useATM2d
# Line 961  C Logical flags for selecting packages Line 979  C Logical flags for selecting packages
979        COMMON /PARM_PACKAGES/        COMMON /PARM_PACKAGES/
980       &        useGAD, useOBCS, useSHAP_FILT, useZONAL_FILT,       &        useGAD, useOBCS, useSHAP_FILT, useZONAL_FILT,
981       &        useOPPS, usePP81, useMY82, useGGL90, useKPP,       &        useOPPS, usePP81, useMY82, useGGL90, useKPP,
982       &        useGMRedi, useDOWN_SLOPE,       &        useGMRedi, useBBL, useDOWN_SLOPE,
983       &        useCAL, useEXF, useBulkForce, useEBM, useCheapAML,       &        useCAL, useEXF, useBulkForce, useEBM, useCheapAML,
984       &        useGrdchk, useSMOOTH, useECCO, useSBO, useFLT,       &        useGrdchk, useSMOOTH, useECCO, useSBO, useFLT,
985       &        usePTRACERS, useGCHEM, useRBCS, useOffLine, useMATRIX,       &        usePTRACERS, useGCHEM, useRBCS, useOffLine, useMATRIX,
986       &        useSEAICE, useSALT_PLUME, useShelfIce,       &        useFRAZIL, useSEAICE, useSALT_PLUME, useShelfIce,
987       &        useICEFRONT, useThSIce,       &        useStreamIce, useICEFRONT, useThSIce,
988       &        useATM2D, useAIM, useLand, useFizhi, useGridAlt,       &        useATM2D, useAIM, useLand, useFizhi, useGridAlt,
989       &        useDiagnostics, useREGRID, useLayers, useMNC,       &        useDiagnostics, useREGRID, useLayers, useMNC,
990       &        useRunClock, useEMBED_FILES,       &        useRunClock, useEMBED_FILES,
991       &        useMYPACKAGE       &        useMYPACKAGE
992    
993    C     Logical flags for turning off parts of the code in adjoint mode
994          LOGICAL useKPPinAdMode, useKPPinFwdMode
995          LOGICAL useGMrediInAdMode, useGMrediInFwdMode
996          LOGICAL useSEAICEinAdMode, useSEAICEinFwdMode
997          COMMON /PARM_PACKAGES_ADJ/
998         &       useKPPinAdMode, useKPPinFwdMode,
999         &       useGMrediInAdMode, useGMrediInFwdMode,
1000         &       useSEAICEinAdMode, useSEAICEinFwdMode
1001    
1002  CEH3 ;;; Local Variables: ***  CEH3 ;;; Local Variables: ***
1003  CEH3 ;;; mode:fortran ***  CEH3 ;;; mode:fortran ***
1004  CEH3 ;;; End: ***  CEH3 ;;; End: ***
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