/[MITgcm]/MITgcm/model/inc/PARAMS.h
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revision 1.130 by edhill, Wed Oct 13 04:37:36 2004 UTC revision 1.165 by baylor, Fri Sep 16 19:33:05 2005 UTC
# Line 49  C     Checkpoint data Line 49  C     Checkpoint data
49    
50  C--   COMMON /PARM_C/ Character valued parameters used by the model.  C--   COMMON /PARM_C/ Character valued parameters used by the model.
51  C     checkPtSuff :: List of checkpoint file suffices  C     checkPtSuff :: List of checkpoint file suffices
52    C     delXFile      :: File containing X-spacing grid definition (1.D array)
53    C     delYFile      :: File containing Y-spacing grid definition (1.D array)
54    C     horizGridFile :: File containing horizontal-grid definition
55    C                        (only when using curvilinear_grid)
56  C     bathyFile   :: File containing bathymetry. If not defined bathymetry  C     bathyFile   :: File containing bathymetry. If not defined bathymetry
57  C                   is taken from inline function.  C                   is taken from inline function.
58  C     topoFile    :: File containing the topography of the surface (unit=m)  C     topoFile    :: File containing the topography of the surface (unit=m)
# Line 68  C     surfQnetFile    :: File containing Line 72  C     surfQnetFile    :: File containing
72  C     surfQswFile     :: File containing surface shortwave radiation  C     surfQswFile     :: File containing surface shortwave radiation
73  C     dQdTfile        :: File containing thermal relaxation coefficient  C     dQdTfile        :: File containing thermal relaxation coefficient
74  C     EmPmRfile       :: File containing surface fresh water flux  C     EmPmRfile       :: File containing surface fresh water flux
75    C     saltFluxFile    :: File containing surface salt flux
76  C     pLoadFile       :: File containing pressure loading  C     pLoadFile       :: File containing pressure loading
77    C     eddyTauxFile    :: File containing zonal Eddy stress data
78    C     eddyTauyFile    :: File containing meridional Eddy stress data
79  C     buoyancyRelation :: Flag used to indicate which relation to use to  C     buoyancyRelation :: Flag used to indicate which relation to use to
80  C                        get buoyancy.  C                        get buoyancy.
81  C     eosType         :: choose the equation of state:  C     eosType         :: choose the equation of state:
82  C                        LINEAR, POLY3, UNESCO, JMD95Z, JMD95P, MDJWF, IDEALGAS  C                        LINEAR, POLY3, UNESCO, JMD95Z, JMD95P, MDJWF, IDEALGAS
83  C     the_run_name    :: string identifying the name of the model "run"  C     the_run_name    :: string identifying the name of the model "run"
84        COMMON /PARM_C/ checkPtSuff,        COMMON /PARM_C/ checkPtSuff,
85         &                delXFile, delYFile, horizGridFile,
86       &                bathyFile, topoFile,       &                bathyFile, topoFile,
87       &                hydrogThetaFile, hydrogSaltFile,       &                hydrogThetaFile, hydrogSaltFile,
88       &                zonalWindFile, meridWindFile, thetaClimFile,       &                zonalWindFile, meridWindFile, thetaClimFile,
89       &                saltClimFile, buoyancyRelation,       &                saltClimFile, buoyancyRelation,
90       &                EmPmRfile, surfQfile, surfQnetFile, surfQswFile,       &                EmPmRfile, saltFluxFile,
91         &                surfQfile, surfQnetFile, surfQswFile,
92         &                lambdaThetaFile, lambdaSaltFile,
93       &                uVelInitFile, vVelInitFile, pSurfInitFile,       &                uVelInitFile, vVelInitFile, pSurfInitFile,
94       &                dQdTfile, ploadFile,       &                dQdTfile, ploadFile,
95         &                eddyTauxFile, eddyTauyFile,
96       &                eosType, pickupSuff,       &                eosType, pickupSuff,
97       &                mdsioLocalDir,       &                mdsioLocalDir,
98       &                the_run_name       &                the_run_name
99        CHARACTER*(5) checkPtSuff(maxNoChkptLev)        CHARACTER*(5) checkPtSuff(maxNoChkptLev)
100          CHARACTER*(MAX_LEN_FNAM) delXFile
101          CHARACTER*(MAX_LEN_FNAM) delYFile
102          CHARACTER*(MAX_LEN_FNAM) horizGridFile
103        CHARACTER*(MAX_LEN_FNAM) bathyFile, topoFile        CHARACTER*(MAX_LEN_FNAM) bathyFile, topoFile
104        CHARACTER*(MAX_LEN_FNAM) hydrogThetaFile        CHARACTER*(MAX_LEN_FNAM) hydrogThetaFile
105        CHARACTER*(MAX_LEN_FNAM) hydrogSaltFile        CHARACTER*(MAX_LEN_FNAM) hydrogSaltFile
# Line 97  C     the_run_name    :: string identify Line 111  C     the_run_name    :: string identify
111        CHARACTER*(MAX_LEN_FNAM) surfQnetFile        CHARACTER*(MAX_LEN_FNAM) surfQnetFile
112        CHARACTER*(MAX_LEN_FNAM) surfQswFile        CHARACTER*(MAX_LEN_FNAM) surfQswFile
113        CHARACTER*(MAX_LEN_FNAM) EmPmRfile        CHARACTER*(MAX_LEN_FNAM) EmPmRfile
114          CHARACTER*(MAX_LEN_FNAM) saltFluxFile
115        CHARACTER*(MAX_LEN_FNAM) buoyancyRelation        CHARACTER*(MAX_LEN_FNAM) buoyancyRelation
116        CHARACTER*(MAX_LEN_FNAM) uVelInitFile        CHARACTER*(MAX_LEN_FNAM) uVelInitFile
117        CHARACTER*(MAX_LEN_FNAM) vVelInitFile        CHARACTER*(MAX_LEN_FNAM) vVelInitFile
118        CHARACTER*(MAX_LEN_FNAM) pSurfInitFile        CHARACTER*(MAX_LEN_FNAM) pSurfInitFile
119        CHARACTER*(MAX_LEN_FNAM) dQdTfile        CHARACTER*(MAX_LEN_FNAM) dQdTfile
120        CHARACTER*(MAX_LEN_FNAM) ploadFile        CHARACTER*(MAX_LEN_FNAM) ploadFile
121          CHARACTER*(MAX_LEN_FNAM) eddyTauxFile
122          CHARACTER*(MAX_LEN_FNAM) eddyTauyFile
123          CHARACTER*(MAX_LEN_FNAM) lambdaThetaFile
124          CHARACTER*(MAX_LEN_FNAM) lambdaSaltFile
125        CHARACTER*(MAX_LEN_FNAM) mdsioLocalDir        CHARACTER*(MAX_LEN_FNAM) mdsioLocalDir
126        CHARACTER*(MAX_LEN_FNAM) the_run_name        CHARACTER*(MAX_LEN_FNAM) the_run_name
127        CHARACTER*(6) eosType        CHARACTER*(6) eosType
# Line 149  C     debugLevel          :: debug level Line 168  C     debugLevel          :: debug level
168       &        nonlinFreeSurf, select_rStar,       &        nonlinFreeSurf, select_rStar,
169       &        tempAdvScheme, tempVertAdvScheme,       &        tempAdvScheme, tempVertAdvScheme,
170       &        saltAdvScheme, saltVertAdvScheme,       &        saltAdvScheme, saltVertAdvScheme,
      &        tracerAdvScheme,  
171       &        debugLevel       &        debugLevel
172        INTEGER cg2dMaxIters        INTEGER cg2dMaxIters
173        INTEGER cg2dChkResFreq        INTEGER cg2dChkResFreq
# Line 168  C     debugLevel          :: debug level Line 186  C     debugLevel          :: debug level
186        INTEGER select_rStar        INTEGER select_rStar
187        INTEGER tempAdvScheme, tempVertAdvScheme        INTEGER tempAdvScheme, tempVertAdvScheme
188        INTEGER saltAdvScheme, saltVertAdvScheme        INTEGER saltAdvScheme, saltVertAdvScheme
       INTEGER tracerAdvScheme  
189        INTEGER debugLevel        INTEGER debugLevel
190    
191  C  C
# Line 198  C     metricTerms   :: Flag which turns Line 215  C     metricTerms   :: Flag which turns
215  C     usingSphericalPolarMTerms :: If TRUE use spherical polar metric terms.  C     usingSphericalPolarMTerms :: If TRUE use spherical polar metric terms.
216  C     useNHMTerms :: If TRUE use non-hydrostatic metric terms.  C     useNHMTerms :: If TRUE use non-hydrostatic metric terms.
217  C     useCoriolis   :: Flag which turns the coriolis terms on and off.  C     useCoriolis   :: Flag which turns the coriolis terms on and off.
 C     tempDiffusion :: Flag which turns diffusion of temperature on  
 C                     and off.  
218  C     tempAdvection :: Flag which turns advection of temperature on  C     tempAdvection :: Flag which turns advection of temperature on
219  C                     and off.  C                     and off.
220  C     tempForcing   :: Flag which turns external forcing of temperature on  C     tempForcing   :: Flag which turns external forcing of temperature on
221  C                     and off.  C                     and off.
 C     saltDiffusion :: Flag which turns diffusion of salinity on  
 C                     and off.  
222  C     saltAdvection :: Flag which turns advection of salinity on  C     saltAdvection :: Flag which turns advection of salinity on
223  C                     and off.  C                     and off.
224  C     saltForcing   :: Flag which turns external forcing of salinity on  C     saltForcing   :: Flag which turns external forcing of salinity on
# Line 213  C                     and off. Line 226  C                     and off.
226  C     useRealFreshWaterFlux :: if True (=Natural BCS), treats P+R-E flux  C     useRealFreshWaterFlux :: if True (=Natural BCS), treats P+R-E flux
227  C                         as a real Fresh Water (=> changes the Sea Level)  C                         as a real Fresh Water (=> changes the Sea Level)
228  C                         if F, converts P+R-E to salt flux (no SL effect)  C                         if F, converts P+R-E to salt flux (no SL effect)
229    C     useFullLeith   :: Set to true to use full Leith viscosity (may be unstable
230    C                       on irregular grids)
231    C     useAnisotropicViscAGridMax :: Set to true to use Alistair's latest
232    C              anisotropic length scale.  It is used only for maximum viscosity
233    C              calculations.  Alistair recommends a value of viscA*GridMax=.25
234    C     useStrainTensionVisc:: Set to true to use Strain-Tension viscous terms
235  C     rigidLid            :: Set to true to use rigid lid  C     rigidLid            :: Set to true to use rigid lid
236  C     implicitFreeSurface :: Set to true to use implcit free surface  C     implicitFreeSurface :: Set to true to use implcit free surface
237  C     exactConserv        :: Set to true to conserve exactly the total Volume  C     exactConserv        :: Set to true to conserve exactly the total Volume
# Line 229  C     useJamartWetPoints :: Use wet-poin Line 248  C     useJamartWetPoints :: Use wet-poin
248  C     useJamartMomAdv :: Use wet-point method for V.I. non-linear term  C     useJamartMomAdv :: Use wet-point method for V.I. non-linear term
249  C     SadournyCoriolis :: use the enstrophy conserving scheme by Sadourny  C     SadournyCoriolis :: use the enstrophy conserving scheme by Sadourny
250  C     upwindVorticity :: bias interpolation of vorticity in the Coriolis term  C     upwindVorticity :: bias interpolation of vorticity in the Coriolis term
251  C     highOrderVorticity :: use 3rd/4th order interp. of vorticity in Coriolis  C     highOrderVorticity :: use 3rd/4th order interp. of vorticity (V.I., advection)
252    C     upwindShear        :: use 1rst order upwind interp. (V.I., vertical advection)
253  C     useAbsVorticity :: work with f+zeta in Coriolis terms  C     useAbsVorticity :: work with f+zeta in Coriolis terms
254  C     implicitDiffusion :: Turns implicit vertical diffusion on  C     implicitDiffusion :: Turns implicit vertical diffusion on
255  C     implicitViscosity :: Turns implicit vertical viscosity on  C     implicitViscosity :: Turns implicit vertical viscosity on
# Line 240  C     multiDimAdvection :: Flag that ena Line 260  C     multiDimAdvection :: Flag that ena
260  C     useMultiDimAdvec  :: True if multi-dim advection is used at least once  C     useMultiDimAdvec  :: True if multi-dim advection is used at least once
261  C     forcing_In_AB :: if False, put forcing (Temp,Salt,Tracers) contribution  C     forcing_In_AB :: if False, put forcing (Temp,Salt,Tracers) contribution
262  C                      out off Adams-Bashforth time stepping.  C                      out off Adams-Bashforth time stepping.
263    C     startFromPickupAB2 :: with AB-3 code, start from an AB-2 pickup
264  C     doThetaClimRelax :: Set true if relaxation to temperature  C     doThetaClimRelax :: Set true if relaxation to temperature
265  C                        climatology is required.  C                        climatology is required.
266  C     doSaltClimRelax  :: Set true if relaxation to salinity  C     doSaltClimRelax  :: Set true if relaxation to salinity
267  C                        climatology is required.  C                        climatology is required.
268  C     periodicExternalForcing :: Set true if forcing is time-dependant  C     periodicExternalForcing :: Set true if forcing is time-dependant
269  C     usingPCoords     :: Set to indicate that we are working in pressure  C     usingPCoords     :: Set to indicate that we are working in a pressure
270  C                        coords. (jmc: is it still used ?)  C                        type coordinate (p or p*).
271  C     usingZCoords     :: Set to indicate that we are working in height  C     usingZCoords     :: Set to indicate that we are working in a height
272  C                        coords. (jmc: is it still used ?)  C                        type coordinate (z or z*)
273    C     fluidIsAir       :: Set to indicate that the fluid major constituent
274    C                        is air
275    C     fluidIsWater     :: Set to indicate that the fluid major constituent
276    C                        is water
277  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)  C     useDynP_inEos_Zc :: use the dynamical pressure in EOS (with Z-coord.)
278  C                         this requires specific code for restart & exchange  C                         this requires specific code for restart & exchange
279  C     setCenterDr    :: set cell Center depth and put Interface at the middle  C     setCenterDr    :: set cell Center depth and put Interface at the middle
# Line 261  C                       useSingleCpuIO i Line 286  C                       useSingleCpuIO i
286  C                       outputs from master mpi process only.  C                       outputs from master mpi process only.
287  C     allowFreezing  :: Allows surface water to freeze and form ice  C     allowFreezing  :: Allows surface water to freeze and form ice
288  C     useOldFreezing :: use the old version (before checkpoint52a_pre, 2003-11-12)  C     useOldFreezing :: use the old version (before checkpoint52a_pre, 2003-11-12)
 C     groundAtK1  :: put the surface(k=1) at the Lower Boundary (=ground)  
289  C     pickup_write_mdsio :: use mdsio to write pickups  C     pickup_write_mdsio :: use mdsio to write pickups
290  C     pickup_read_mdsio  :: use mdsio to read  pickups  C     pickup_read_mdsio  :: use mdsio to read  pickups
291  C     pickup_write_immed :: echo the pickup immediately (for conversion)  C     pickup_write_immed :: echo the pickup immediately (for conversion)
292  C     timeave_mdsio      :: use mdsio for timeave output  C     timeave_mdsio      :: use mdsio for timeave output
293  C     snapshot_mdsio     :: use mdsio for "snapshot" (dumpfreq/diagfreq) output  C     snapshot_mdsio     :: use mdsio for "snapshot" (dumpfreq/diagfreq) output
294  C     monitor_stdio      :: use stdio for monitor output  C     monitor_stdio      :: use stdio for monitor output
295    C     calendarDumps :: When set, approximate months (30-31 days) and years (360-372 days)
296    C                      for parameters chkPtFreq, pChkPtFreq, taveFreq, SEAICE_taveFreq,
297    C                      KPP_taveFreq, and freq in pkg/diagnostics are converted to exact
298    C                      calendar months and years.  Requires pkg/cal.
299    C     dumpInitAndLast :: dumps model state to files at Initial (nIter0)
300    C                        & Last iteration, in addition multiple of dumpFreq iter.
301        COMMON /PARM_L/ usingCartesianGrid, usingSphericalPolarGrid,        COMMON /PARM_L/ usingCartesianGrid, usingSphericalPolarGrid,
302       & usingCurvilinearGrid, usingCylindricalGrid,       & usingCurvilinearGrid, usingCylindricalGrid,
303       & no_slip_sides,no_slip_bottom,       & no_slip_sides,no_slip_bottom,
304       & staggerTimeStep,       & staggerTimeStep,
305       & momViscosity, momAdvection, momForcing, useCoriolis,       & momViscosity, momAdvection, momForcing, useCoriolis,
306       & momPressureForcing, vectorInvariantMomentum,       & momPressureForcing, vectorInvariantMomentum,
307       & tempDiffusion, tempAdvection, tempForcing,       & tempAdvection, tempForcing,
308       & saltDiffusion, saltAdvection, saltForcing,       & saltAdvection, saltForcing,
309       & useRealFreshWaterFlux,       & useRealFreshWaterFlux,
310         & useFullLeith, useAnisotropicViscAGridMax, useStrainTensionVisc,
311       & rigidLid, implicitFreeSurface, exactConserv, uniformLin_PhiSurf,       & rigidLid, implicitFreeSurface, exactConserv, uniformLin_PhiSurf,
312       & momStepping, tempStepping, saltStepping,       & momStepping, tempStepping, saltStepping,
313       & metricTerms, usingSphericalPolarMTerms, useNHMTerms,       & metricTerms, usingSphericalPolarMTerms, useNHMTerms,
# Line 284  C     monitor_stdio      :: use stdio fo Line 315  C     monitor_stdio      :: use stdio fo
315       & useCDscheme,       & useCDscheme,
316       & useEnergyConservingCoriolis, useJamartWetPoints, useJamartMomAdv,       & useEnergyConservingCoriolis, useJamartWetPoints, useJamartMomAdv,
317       & SadournyCoriolis, upwindVorticity, highOrderVorticity,       & SadournyCoriolis, upwindVorticity, highOrderVorticity,
318       & useAbsVorticity,       & useAbsVorticity, upwindShear,
319       & implicitDiffusion, implicitViscosity,       & implicitDiffusion, implicitViscosity,
320       & tempImplVertAdv, saltImplVertAdv, momImplVertAdv,       & tempImplVertAdv, saltImplVertAdv, momImplVertAdv,
321       & multiDimAdvection, useMultiDimAdvec, forcing_In_AB,       & multiDimAdvection, useMultiDimAdvec, forcing_In_AB,
322       & doThetaClimRelax, doSaltClimRelax, doTr1ClimRelax,       & doThetaClimRelax, doSaltClimRelax, doTr1ClimRelax,
323       & periodicExternalForcing,       & periodicExternalForcing,
324         & fluidIsAir, fluidIsWater,
325       & usingPCoords, usingZCoords, useDynP_inEos_Zc, setCenterDr,       & usingPCoords, usingZCoords, useDynP_inEos_Zc, setCenterDr,
326       & nonHydrostatic, quasiHydrostatic, globalFiles, useSingleCpuIO,       & nonHydrostatic, quasiHydrostatic, globalFiles, useSingleCpuIO,
327       & allowFreezing, useOldFreezing, groundAtK1,       & allowFreezing, useOldFreezing,
328       & usePickupBeforeC35, usePickupBeforeC54, debugMode,       & usePickupBeforeC35, usePickupBeforeC54, startFromPickupAB2,
      & readPickupWithTracer, writePickupWithTracer,  
329       & pickup_read_mdsio, pickup_write_mdsio, pickup_write_immed,       & pickup_read_mdsio, pickup_write_mdsio, pickup_write_immed,
330       & timeave_mdsio, snapshot_mdsio, monitor_stdio       & timeave_mdsio, snapshot_mdsio, monitor_stdio,
331         & outputTypesInclusive, dumpInitAndLast, debugMode,
332         & inAdMode, inAdTrue, inAdFalse, inAdExact,
333         & calendarDumps
334    
335        LOGICAL usingCartesianGrid        LOGICAL usingCartesianGrid
336        LOGICAL usingSphericalPolarGrid        LOGICAL usingSphericalPolarGrid
337        LOGICAL usingCylindricalGrid        LOGICAL usingCylindricalGrid
# Line 312  C     monitor_stdio      :: use stdio fo Line 347  C     monitor_stdio      :: use stdio fo
347        LOGICAL momPressureForcing        LOGICAL momPressureForcing
348        LOGICAL useCoriolis        LOGICAL useCoriolis
349        LOGICAL vectorInvariantMomentum        LOGICAL vectorInvariantMomentum
       LOGICAL tempDiffusion  
350        LOGICAL tempAdvection        LOGICAL tempAdvection
351        LOGICAL tempForcing        LOGICAL tempForcing
       LOGICAL saltDiffusion  
352        LOGICAL saltAdvection        LOGICAL saltAdvection
353        LOGICAL saltForcing        LOGICAL saltForcing
354        LOGICAL useRealFreshWaterFlux        LOGICAL useRealFreshWaterFlux
355          LOGICAL useFullLeith
356          LOGICAL useAnisotropicViscAGridMax
357          LOGICAL useStrainTensionVisc
358        LOGICAL rigidLid        LOGICAL rigidLid
359        LOGICAL implicitFreeSurface        LOGICAL implicitFreeSurface
360        LOGICAL exactConserv        LOGICAL exactConserv
# Line 338  C     monitor_stdio      :: use stdio fo Line 374  C     monitor_stdio      :: use stdio fo
374        LOGICAL upwindVorticity        LOGICAL upwindVorticity
375        LOGICAL highOrderVorticity        LOGICAL highOrderVorticity
376        LOGICAL useAbsVorticity        LOGICAL useAbsVorticity
377          LOGICAL upwindShear
378        LOGICAL implicitDiffusion        LOGICAL implicitDiffusion
379        LOGICAL implicitViscosity        LOGICAL implicitViscosity
380        LOGICAL tempImplVertAdv        LOGICAL tempImplVertAdv
# Line 350  C     monitor_stdio      :: use stdio fo Line 387  C     monitor_stdio      :: use stdio fo
387        LOGICAL doSaltClimRelax        LOGICAL doSaltClimRelax
388        LOGICAL doTr1ClimRelax        LOGICAL doTr1ClimRelax
389        LOGICAL periodicExternalForcing        LOGICAL periodicExternalForcing
390          LOGICAL fluidIsAir
391          LOGICAL fluidIsWater
392        LOGICAL usingPCoords        LOGICAL usingPCoords
393        LOGICAL usingZCoords        LOGICAL usingZCoords
394        LOGICAL useDynP_inEos_Zc        LOGICAL useDynP_inEos_Zc
# Line 360  C     monitor_stdio      :: use stdio fo Line 399  C     monitor_stdio      :: use stdio fo
399        LOGICAL useSingleCpuIO        LOGICAL useSingleCpuIO
400        LOGICAL allowFreezing        LOGICAL allowFreezing
401        LOGICAL useOldFreezing        LOGICAL useOldFreezing
       LOGICAL groundAtK1  
402        LOGICAL usePickupBeforeC35        LOGICAL usePickupBeforeC35
403        LOGICAL usePickupBeforeC54        LOGICAL usePickupBeforeC54
404          LOGICAL startFromPickupAB2
405          LOGICAL dumpInitAndLast
406        LOGICAL debugMode        LOGICAL debugMode
       LOGICAL readPickupWithTracer  
       LOGICAL writePickupWithTracer  
407        LOGICAL pickup_read_mdsio, pickup_write_mdsio        LOGICAL pickup_read_mdsio, pickup_write_mdsio
408        LOGICAL pickup_write_immed        LOGICAL pickup_write_immed
409        LOGICAL timeave_mdsio, snapshot_mdsio, monitor_stdio        LOGICAL timeave_mdsio, snapshot_mdsio, monitor_stdio
410          LOGICAL outputTypesInclusive
411          LOGICAL inAdMode, inAdTrue, inAdFalse, inAdExact
412          LOGICAL calendarDumps
413    
414  C--   COMMON /PARM_R/ "Real" valued parameters used by the model.  C--   COMMON /PARM_R/ "Real" valued parameters used by the model.
415  C     cg2dTargetResidual  C     cg2dTargetResidual
# Line 401  C     gBaro     :: Accel. due to gravity Line 442  C     gBaro     :: Accel. due to gravity
442  C     rhoNil    :: Reference density for the linear equation of state  C     rhoNil    :: Reference density for the linear equation of state
443  C     rhoConst  :: Vertically constant reference density  C     rhoConst  :: Vertically constant reference density
444  C     rhoConstFresh :: Constant reference density for fresh water (rain)  C     rhoConstFresh :: Constant reference density for fresh water (rain)
445  C     startTime :: Start time for model ( s )  C     tRef      :: reference vertical profile for potential temperature
446    C     sRef      :: reference vertical profile for salinity/specific humidity
447  C     phiMin    :: Latitude of southern most cell face.  C     phiMin    :: Latitude of southern most cell face.
448  C     thetaMin  :: Longitude of western most cell face (this  C     thetaMin  :: Longitude of western most cell face (this
449  C                 is an "inert" parameter but it is included  C                 is an "inert" parameter but it is included
# Line 422  C     viscAr    :: Eddy viscosity coeff. Line 464  C     viscAr    :: Eddy viscosity coeff.
464  C                 momentum vertically ( units of r^2/s )  C                 momentum vertically ( units of r^2/s )
465  C     viscA4    :: Biharmonic viscosity coeff. for mixing of  C     viscA4    :: Biharmonic viscosity coeff. for mixing of
466  C                 momentum laterally ( m^4/s )  C                 momentum laterally ( m^4/s )
467  C     viscC2leith :: Leith non-dimensional viscosity factor  C     viscA4W   :: Biharmonic viscosity coeff. for mixing of vertical
468    C                 momentum laterally, no effect for hydrostatic
469    C                 model, defaults to viscA4 if unset ( m^2/s )
470    C     viscAhD   :: Eddy viscosity coeff. for mixing of momentum laterally
471    C                  (act on Divergence part) ( m^2/s )
472    C     viscAhZ   :: Eddy viscosity coeff. for mixing of momentum laterally
473    C                  (act on Vorticity  part) ( m^2/s )
474    C     viscA4D   :: Biharmonic viscosity coeff. for mixing of momentum laterally
475    C                  (act on Divergence part) ( m^4/s )
476    C     viscA4Z   :: Biharmonic viscosity coeff. for mixing of momentum laterally
477    C                  (act on Vorticity  part) ( m^4/s )
478    C     viscC2leith :: Leith non-dimensional viscosity factor (grad(vort))
479    C     viscC2leithD :: Modified Leith non-dimensional viscosity factor (grad(div))
480    C     viscC2smag  :: Smagorinsky non-dimensional viscosity factor (harmonic)
481    C     viscC4smag  :: Smagorinsky non-dimensional viscosity factor (biharmonic)
482  C     viscAhMax :: Maximum eddy viscosity coeff. for mixing of  C     viscAhMax :: Maximum eddy viscosity coeff. for mixing of
483  C                 momentum laterally ( m^2/s )  C                 momentum laterally ( m^2/s )
484    C     viscAhGridMax:: maximum and minimum harmonic viscosity coefficients ...
485    C     viscAhGridMin::  in terms of non-dimensional grid-size dependent viscosity
486  C     viscA4Max :: Maximum biharmonic viscosity coeff. for mixing of  C     viscA4Max :: Maximum biharmonic viscosity coeff. for mixing of
487  C                 momentum laterally ( m^4/s )  C                 momentum laterally ( m^4/s )
488  C     viscAhGrid:: non-dimensional grid-size dependent viscosity  C     viscAhGrid:: non-dimensional grid-size dependent viscosity
489  C     viscA4Grid:: non-dimensional grid-size dependent bi-harmonic viscosity  C     viscA4Grid:: non-dimensional grid-size dependent bi-harmonic viscosity
490  C     viscC4leith :: Leith non-dimensional viscosity factor  C     viscA4GridMax:: maximum and minimum biharmonic viscosity coefficients ...
491    C     viscA4GridMin::  in terms of non-dimensional grid-size dependent viscosity
492    C     viscC4leith :: Leith non-dimensional viscosity factor (grad(vort))
493    C     viscC4leithD :: Modified Leith non-dimensional viscosity factor (grad(div))
494  C     diffKhT   :: Laplacian diffusion coeff. for mixing of  C     diffKhT   :: Laplacian diffusion coeff. for mixing of
495  C                 heat laterally ( m^2/s )  C                 heat laterally ( m^2/s )
496  C     diffKrT   :: Laplacian diffusion coeff. for mixing of  C     diffKrNrT :: vertical profile of Laplacian diffusion coeff.
497  C                 heat vertically ( units of r^2/s )  C                 for mixing of heat vertically ( units of r^2/s )
498  C     diffK4T   :: Biharmonic diffusion coeff. for mixing of  C     diffK4T   :: Biharmonic diffusion coeff. for mixing of
499  C                 heat laterally ( m^4/s )  C                 heat laterally ( m^4/s )
500  C     diffKhS  ::  Laplacian diffusion coeff. for mixing of  C     diffKhS  ::  Laplacian diffusion coeff. for mixing of
501  C                 salt laterally ( m^2/s )  C                 salt laterally ( m^2/s )
502  C     diffKrS   :: Laplacian diffusion coeff. for mixing of  C     diffKrNrS :: vertical profile of Laplacian diffusion coeff.
503  C                 salt vertically ( units of r^2/s )  C                 for mixing of salt vertically ( units of r^2/s ),
504  C     diffK4S   :: Biharmonic diffusion coeff. for mixing of  C     diffK4S   :: Biharmonic diffusion coeff. for mixing of
505  C                 salt laterally ( m^4/s )  C                 salt laterally ( m^4/s )
506  C     diffKrBL79surf :: T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979  C     diffKrBL79surf :: T/S surface diffusivity (m^2/s) Bryan and Lewis, 1979
# Line 454  C                    it will be the deep Line 515  C                    it will be the deep
515  C                    Frequency of checkpointing and dumping of the model state  C                    Frequency of checkpointing and dumping of the model state
516  C                    are referenced to this clock. ( s )  C                    are referenced to this clock. ( s )
517  C     deltaTMom    :: Timestep for momemtum equations ( s )  C     deltaTMom    :: Timestep for momemtum equations ( s )
518  C     deltaTtracer :: Timestep for tracer equations ( s )  C     dTtracerLev  :: Timestep for tracer equations ( s ), function of level k
519  C     deltaTfreesurf :: Timestep for free-surface equation ( s )  C     deltaTfreesurf :: Timestep for free-surface equation ( s )
520  C     freesurfFac  :: Parameter to turn implicit free surface term on or off  C     freesurfFac  :: Parameter to turn implicit free surface term on or off
521  C                    freesurfac = 1. uses implicit free surface  C                    freesurfac = 1. uses implicit free surface
522  C                    freesurfac = 0. uses rigid lid  C                    freesurfac = 0. uses rigid lid
523    C     abEps        :: Adams-Bashforth-2 stabilizing weight
524    C     alph_AB      :: Adams-Bashforth-3 primary factor
525    C     beta_AB      :: Adams-Bashforth-3 secondary factor
526  C     implicSurfPress :: parameter of the Crank-Nickelson time stepping :  C     implicSurfPress :: parameter of the Crank-Nickelson time stepping :
527  C                     Implicit part of Surface Pressure Gradient ( 0-1 )  C                     Implicit part of Surface Pressure Gradient ( 0-1 )
528  C     implicDiv2Dflow :: parameter of the Crank-Nickelson time stepping :  C     implicDiv2Dflow :: parameter of the Crank-Nickelson time stepping :
# Line 471  C     hFacInf      :: Threshold (inf and Line 535  C     hFacInf      :: Threshold (inf and
535  C     hFacSup        that control vanishing and creating levels  C     hFacSup        that control vanishing and creating levels
536  C     tauCD        :: CD scheme coupling timescale ( 1/s )  C     tauCD        :: CD scheme coupling timescale ( 1/s )
537  C     rCD          :: CD scheme normalised coupling parameter ( 0-1 )  C     rCD          :: CD scheme normalised coupling parameter ( 0-1 )
538    C     baseTime      :: model base time (time origin) = time @ iteration zero
539  C     startTime     :: Starting time for this integration ( s ).  C     startTime     :: Starting time for this integration ( s ).
540  C     endTime       :: Ending time for this integration ( s ).  C     endTime       :: Ending time for this integration ( s ).
541  C     chkPtFreq     :: Frequency of rolling check pointing ( s ).  C     chkPtFreq     :: Frequency of rolling check pointing ( s ).
# Line 494  C     tave_lastIter :: (for state variab Line 559  C     tave_lastIter :: (for state variab
559  C                      step (of each taveFreq period) put in the time average.  C                      step (of each taveFreq period) put in the time average.
560  C                      (fraction for 1rst iter = 1 - tave_lastIter)  C                      (fraction for 1rst iter = 1 - tave_lastIter)
561  C     tauThetaClimRelax :: Relaxation to climatology time scale ( s ).  C     tauThetaClimRelax :: Relaxation to climatology time scale ( s ).
 C     lambdaThetaClimRelax :: Inverse time scale for relaxation ( 1/s ).  
562  C     tauSaltClimRelax :: Relaxation to climatology time scale ( s ).  C     tauSaltClimRelax :: Relaxation to climatology time scale ( s ).
 C     lambdaSaltClimRelax :: Inverse time scale for relaxation ( 1/s ).  
563  C     latBandClimRelax :: latitude band where Relaxation to Clim. is applied,  C     latBandClimRelax :: latitude band where Relaxation to Clim. is applied,
564  C                         i.e. where |yC| <= latBandClimRelax  C                         i.e. where |yC| <= latBandClimRelax
565  C     externForcingPeriod :: Is the period of which forcing varies (eg. 1 month)  C     externForcingPeriod :: Is the period of which forcing varies (eg. 1 month)
# Line 507  C     convertFW2Salt :: salinity, used t Line 570  C     convertFW2Salt :: salinity, used t
570  C                       (use model surface (local) value if set to -1)  C                       (use model surface (local) value if set to -1)
571  C     temp_EvPrRn :: temperature of Rain & Evap.  C     temp_EvPrRn :: temperature of Rain & Evap.
572  C     salt_EvPrRn :: salinity of Rain & Evap.  C     salt_EvPrRn :: salinity of Rain & Evap.
 C     trac_EvPrRn :: tracer concentration in Rain & Evap.  
573  C        (notes: a) tracer content of Rain/Evap only used if both  C        (notes: a) tracer content of Rain/Evap only used if both
574  C                     NonLin_FrSurf & useRealFreshWater are set.  C                     NonLin_FrSurf & useRealFreshWater are set.
575  C                b) use model surface (local) value if set to UNSET_RL)  C                b) use model surface (local) value if set to UNSET_RL)
# Line 521  C      --"-"--  Quadratic  ( linear: 1/s Line 583  C      --"-"--  Quadratic  ( linear: 1/s
583        COMMON /PARM_R/ cg2dTargetResidual, cg2dTargetResWunit,        COMMON /PARM_R/ cg2dTargetResidual, cg2dTargetResWunit,
584       & cg2dpcOffDFac, cg3dTargetResidual,       & cg2dpcOffDFac, cg3dTargetResidual,
585       & delR, delRc, delX, delY,       & delR, delRc, delX, delY,
586       & deltaT, deltaTmom, deltaTtracer, deltaTfreesurf, deltaTClock,       & deltaT, deltaTmom, dTtracerLev, deltaTfreesurf, deltaTClock,
587       & abeps, startTime,       & abEps, alph_AB, beta_AB,
588       & phiMin, thetaMin, rSphere, recip_RSphere, f0, beta,       & phiMin, thetaMin, rSphere, recip_RSphere, f0, beta,
589       & fCori, fCoriG, fCoriCos,       & viscAh, viscAhW, viscAhMax,
590       & viscAh, viscAhW, viscAhMax, viscAhGrid, viscC2leith,       & viscAhGrid, viscAhGridMax, viscAhGridMin,
591       & viscA4,  viscA4Max, viscA4Grid, viscC4leith,       & viscC2leith, viscC2leithD,
592       & viscAr, viscAstrain, viscAtension,       & viscC2smag, viscC4smag,
593       & diffKhT, diffK4T, diffKrT,       & viscAhD, viscAhZ, viscA4D, viscA4Z,
594       & diffKhS, diffK4S, diffKrS,       & viscA4, viscA4W,
595         & viscA4Max, viscA4Grid, viscA4GridMax, viscA4GridMin,
596         & viscC4leith, viscC4leithD, viscAr,
597         & diffKhT, diffK4T, diffKrNrT,
598         & diffKhS, diffK4S, diffKrNrS,
599       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,       & diffKrBL79surf, diffKrBL79deep, diffKrBL79scl, diffKrBL79Ho,
600       & delT, tauCD, rCD, freeSurfFac, implicSurfPress, implicDiv2Dflow,       & delT, tauCD, rCD, freeSurfFac, implicSurfPress, implicDiv2Dflow,
601       & hFacMin, hFacMinDz, hFacInf, hFacSup,       & hFacMin, hFacMinDz, hFacInf, hFacSup,
602       & gravity, recip_Gravity, gBaro, rhonil, recip_rhonil,       & gravity, recip_Gravity, gBaro, rhonil, recip_rhonil,
603       & recip_rhoConst, rhoConst,       & recip_rhoConst, rhoConst,
604       & rhoConstFresh, convertEmP2rUnit, tRef, sRef,       & rhoConstFresh, convertEmP2rUnit, tRef, sRef,
605       & endTime, chkPtFreq, pchkPtFreq, dumpFreq, adjDumpFreq,       & baseTime, startTime, endTime,
606       & diagFreq, taveFreq, tave_lastIter, monitorFreq,       & chkPtFreq, pchkPtFreq, dumpFreq, adjDumpFreq,
607         & diagFreq, taveFreq, tave_lastIter, monitorFreq, adjMonitorFreq,
608       & afFacMom, vfFacMom, pfFacMom, cfFacMom, foFacMom, mtFacMom,       & afFacMom, vfFacMom, pfFacMom, cfFacMom, foFacMom, mtFacMom,
609       & cosPower, cAdjFreq, omega, rotationPeriod,       & cosPower, cAdjFreq, omega, rotationPeriod,
610       & tauThetaClimRelax, lambdaThetaClimRelax,       & tauThetaClimRelax,
611       & tauSaltClimRelax, lambdaSaltClimRelax,       & tauSaltClimRelax,
612       & tauTr1ClimRelax, lambdaTr1ClimRelax, latBandClimRelax,       & tauTr1ClimRelax, lambdaTr1ClimRelax, latBandClimRelax,
613       & externForcingCycle, externForcingPeriod,       & externForcingCycle, externForcingPeriod,
614       & convertFW2Salt, temp_EvPrRn, salt_EvPrRn, trac_EvPrRn,       & convertFW2Salt, temp_EvPrRn, salt_EvPrRn,
615       & hFacMinDr, hFacMinDp,       & hFacMinDr, hFacMinDp,
616       & horiVertRatio, recip_horiVertRatio,       & horiVertRatio, recip_horiVertRatio,
617       & ivdc_kappa, Ro_SeaLevel,       & ivdc_kappa, Ro_SeaLevel,
618       & bottomDragLinear,bottomDragQuadratic,       & bottomDragLinear,bottomDragQuadratic,nh_Am2,
619       & tCyl       & tCylIn, tCylOut
620    
621          _RL nh_Am2
622        _RL cg2dTargetResidual        _RL cg2dTargetResidual
623        _RL cg2dTargetResWunit        _RL cg2dTargetResWunit
624        _RL cg3dTargetResidual        _RL cg3dTargetResidual
# Line 562  C      --"-"--  Quadratic  ( linear: 1/s Line 630  C      --"-"--  Quadratic  ( linear: 1/s
630        _RL deltaT        _RL deltaT
631        _RL deltaTClock        _RL deltaTClock
632        _RL deltaTmom        _RL deltaTmom
633        _RL deltaTtracer        _RL dTtracerLev(Nr)
634        _RL deltaTfreesurf        _RL deltaTfreesurf
635        _RL abeps        _RL abEps, alph_AB, beta_AB
636        _RL phiMin        _RL phiMin
637        _RL thetaMin        _RL thetaMin
638        _RL rSphere        _RL rSphere
# Line 582  C      --"-"--  Quadratic  ( linear: 1/s Line 650  C      --"-"--  Quadratic  ( linear: 1/s
650        _RL beta        _RL beta
651        _RL viscAh        _RL viscAh
652        _RL viscAhW        _RL viscAhW
653          _RL viscAhD
654          _RL viscAhZ
655        _RL viscAhMax        _RL viscAhMax
656        _RL viscAhGrid        _RL viscAhGrid
657          _RL viscAhGridMax
658          _RL viscAhGridMin
659        _RL viscC2leith        _RL viscC2leith
660        _RL viscAstrain        _RL viscC2leithD
661        _RL viscAtension        _RL viscC2smag
662          _RL viscC4smag
663        _RL viscAr        _RL viscAr
664        _RL viscA4        _RL viscA4
665          _RL viscA4W
666          _RL viscA4D
667          _RL viscA4Z
668        _RL viscA4Max        _RL viscA4Max
669        _RL viscA4Grid        _RL viscA4Grid, viscA4GridMax, viscA4GridMin
670        _RL viscC4leith        _RL viscC4leith
671          _RL viscC4leithD
672        _RL diffKhT        _RL diffKhT
673        _RL diffKrT        _RL diffKrNrT(Nr)
674        _RL diffK4T        _RL diffK4T
675        _RL diffKhS        _RL diffKhS
676        _RL diffKrS        _RL diffKrNrS(Nr)
677        _RL diffK4S        _RL diffK4S
678        _RL diffKrBL79surf        _RL diffKrBL79surf
679        _RL diffKrBL79deep        _RL diffKrBL79deep
# Line 616  C      --"-"--  Quadratic  ( linear: 1/s Line 693  C      --"-"--  Quadratic  ( linear: 1/s
693        _RL convertEmP2rUnit        _RL convertEmP2rUnit
694        _RL tRef(Nr)        _RL tRef(Nr)
695        _RL sRef(Nr)        _RL sRef(Nr)
696        _RS fCori(1-OLx:sNx+OLx,1-OLy:sNy+OLy,nSx,nSy)        _RL baseTime
       _RS fCoriG(1-OLx:sNx+OLx,1-OLy:sNy+OLy,nSx,nSy)  
       _RS fCoriCos(1-OLx:sNx+OLx,1-OLy:sNy+OLy,nSx,nSy)  
697        _RL startTime        _RL startTime
698        _RL endTime        _RL endTime
699        _RL chkPtFreq        _RL chkPtFreq
# Line 629  C      --"-"--  Quadratic  ( linear: 1/s Line 704  C      --"-"--  Quadratic  ( linear: 1/s
704        _RL taveFreq        _RL taveFreq
705        _RL tave_lastIter        _RL tave_lastIter
706        _RL monitorFreq        _RL monitorFreq
707          _RL adjMonitorFreq
708        _RL afFacMom        _RL afFacMom
709        _RL vfFacMom        _RL vfFacMom
710        _RL pfFacMom        _RL pfFacMom
# Line 640  C      --"-"--  Quadratic  ( linear: 1/s Line 716  C      --"-"--  Quadratic  ( linear: 1/s
716        _RL omega        _RL omega
717        _RL rotationPeriod        _RL rotationPeriod
718        _RL tauThetaClimRelax        _RL tauThetaClimRelax
       _RL lambdaThetaClimRelax  
719        _RL tauSaltClimRelax        _RL tauSaltClimRelax
       _RL lambdaSaltClimRelax  
720        _RL tauTr1ClimRelax        _RL tauTr1ClimRelax
721        _RL lambdaTr1ClimRelax        _RL lambdaTr1ClimRelax
722        _RL latBandClimRelax        _RL latBandClimRelax
# Line 651  C      --"-"--  Quadratic  ( linear: 1/s Line 725  C      --"-"--  Quadratic  ( linear: 1/s
725        _RL convertFW2Salt        _RL convertFW2Salt
726        _RL temp_EvPrRn        _RL temp_EvPrRn
727        _RL salt_EvPrRn        _RL salt_EvPrRn
       _RL trac_EvPrRn  
728        _RL horiVertRatio        _RL horiVertRatio
729        _RL recip_horiVertRatio        _RL recip_horiVertRatio
730        _RL ivdc_kappa        _RL ivdc_kappa
731        _RL Ro_SeaLevel        _RL Ro_SeaLevel
732        _RL bottomDragLinear        _RL bottomDragLinear
733        _RL bottomDragQuadratic        _RL bottomDragQuadratic
734        _RL tCyl        _RL tCylIn
735          _RL tCylOut
736    
737  C--   COMMON /PARM_A/ Thermodynamics constants ?  C--   COMMON /PARM_A/ Thermodynamics constants ?
738        COMMON /PARM_A/ HeatCapacity_Cp,recip_Cp        COMMON /PARM_A/ HeatCapacity_Cp,recip_Cp
# Line 701  C Logical flags for selecting packages Line 775  C Logical flags for selecting packages
775        LOGICAL useZONAL_FILT        LOGICAL useZONAL_FILT
776        LOGICAL useFLT        LOGICAL useFLT
777        LOGICAL usePTRACERS        LOGICAL usePTRACERS
778          LOGICAL useGCHEM
779        LOGICAL useSBO        LOGICAL useSBO
780        LOGICAL useSEAICE        LOGICAL useSEAICE
781        LOGICAL useBulkForce        LOGICAL useBulkForce
# Line 710  C Logical flags for selecting packages Line 785  C Logical flags for selecting packages
785        LOGICAL usediagnostics        LOGICAL usediagnostics
786        LOGICAL useEBM        LOGICAL useEBM
787        LOGICAL useMNC        LOGICAL useMNC
788          LOGICAL useMATRIX
789          LOGICAL useRunClock
790        COMMON /PARM_PACKAGES/        COMMON /PARM_PACKAGES/
791       &        useKPP, useGMRedi, useOBCS, useAIM, useLand, useECCO,       &        useKPP, useGMRedi, useOBCS, useAIM, useLand, useECCO,
792       &        useSHAP_FILT, useZONAL_FILT, useGrdchk, useFLT,       &        useSHAP_FILT, useZONAL_FILT, useGrdchk, useFLT,
793       &        usePTRACERS,  useSBO, useSEAICE, useThSIce, useBulkForce,       &        usePTRACERS, useGCHEM,
794       &        usefizhi,  usegridalt, usediagnostics, useEBM, useMNC,       &        useSBO, useSEAICE, useThSIce, useBulkForce,
795       &        usePP81, useMY82, useOPPS, useGGL90       &        usefizhi, usegridalt, usediagnostics, useEBM, useMNC,
796         &        usePP81, useMY82, useOPPS, useGGL90, useMATRIX,
797         &        useRunClock
798    
799  CEH3 ;;; Local Variables: ***  CEH3 ;;; Local Variables: ***
800  CEH3 ;;; mode:fortran ***  CEH3 ;;; mode:fortran ***
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