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hopefully fix sigreg problems for Martin
fix incorrect C syntax (all decls must appear before statements)
make it easier to remoze sigreg
o fix bad syntax -- as reported by Martin Losch
o add a signal handler so that a user can run "killall mitgcmuv" and the model will, at the end of the current iteration, write out all the normal checkpoint files and gracefully stop - off by default so its very unlikely to hurt anything - TODO: can be extended with an MPI global sum that will allow it to work the same way in an MPI environment
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