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o adjoint-friendly modifications to pkg/seaice
release1_p17 o added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics
release1_p16 o fixed gather/scatter inital MPI dialogue in ini_procs.F o pkg/seaice/lsr.F has been moved to SouthWest B-grid location and has been made the default dynamic solver because of its fast convergence properties relative to adi.F solver.
release1_p15 o Added CFC-11 diagnostics, see verification/global_with_CFC11/README
release1_p14 o Added interpolation routine pkg/exf/new_interp.F for on-the-fly interpolation. Enable with USE_EXF_INTERPOLATION and specify input grids in data.exf o Added direct pressure solver pkg/solver. See pkg/solver/README.directSolver for instructions.
o bug fix for pkg/seaice dynamic solver
o Updated pkg/seaice and pkg/exf with adjoint modifications from icebear4
o the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT
o SEAICE_WRITE_PICKUP needs to be called before WRITE_CHECKPOINT
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F o Added SEAICE_initialHEFF to pkg/seaice
Modified File doc/tag-index
modified verification/lab_sea/code/SEAICE_OPTIONS.EXF_FLUXES.h
verification/lab_sea/code/SEAICE_OPTIONS.h
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, kpp_transport_t.F, forward_step.F, and the_main_loop.F
- adjoint-friendly pkg/seaice modifications
Modified File doc/tag-index
o pkg/seaice: - bug fix in growth.F: QNET for no shortwave case - added HeffFile for specifying initial sea-ice thickness
o pkg/seaice: - bug fix in growth.F: QNET for no shortwave case - default initial ice thickness changed from 1 m to 0 m
o Updated useSingleCpuIO option in mdsio_writefield.F to work with multi-field files, e.g., for single-file pickup.
Modified Files: doc/tag-index pkg/kpp/kpp_readparms.F
verification/lab_sea/results/output.txt
verification/natl_box/results/output.txt
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F to avoid negative values in shallow regions. o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F o Added useSingleCpuIO option (see PARAMS.h). ---------------------------------------------------------------- Modified Files: Tag: release1 doc/tag-index eesupp/src/ini_procs.F model/inc/PARAMS.h model/src/ini_parms.F model/src/set_defaults.F pkg/kpp/kpp_do_diags.F pkg/kpp/kpp_readparms.F pkg/kpp/kpp_routines.F pkg/mdsio/mdsio_writefield.F pkg/sbo/README.sbo pkg/sbo/sbo_calc.F pkg/sbo/sbo_diags.F verification/lab_sea/code/CPP_OPTIONS.h verification/lab_sea/input/.genmakerc verification/lab_sea/input/data.pkg Added Files: Tag: release1 eesupp/src/gather_2d.F eesupp/src/scatter_2d.F verification/lab_sea/input/data.sbo
o added pkg/sbo for computing IERS Special Bureau for the Oceans (SBO) core products, including oceanic mass, center-of-mass, angular, and bottom pressure. Modified Files: doc/tag-index model/inc/CPP_OPTIONS.h model/inc/PARAMS.h model/src/do_the_model_io.F model/src/packages_boot.F model/src/packages_check.F model/src/packages_readparms.F model/src/the_model_main.F
o modifications for using pkg/exf with pkg/seaice - improved description of the various forcing configurations - added basic radiation bulk formulae to pkg/exf - units/sign fix for evap computation in exf_getffields.F - updated verification/global_with_exf/results/output.txt
- improved description of the various forcing configurations - added basic radiation bulk formulae to pkg/exf
o modifications for using pkg/exf with pkg/seaice
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING
and SEAICE_EXTERNAL_FLUXES
- pkg/exf CPP options EXF_READ_EVAP and
EXF_NO_BULK_COMPUTATIONS
- usage examples are Experiments 8 and 9 in
verification/lab_sea/README
- verification/lab_sea default experiment now uses
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf
release1_p9
o pkg/seaice
- removed GOTO's and added taf directives
- double precision constants to reduce the g77 (Linux)
to F77 (SGI) differences reported in release1_p8
o tools/genmake
- added SGI options
o verification/testscript
- updated to that of checkpoint47a_post
o verification/global_ocean.90x40x15/input/eedata
- modified for SGI f77 compatibility
o verification/lab_sea
- added description of sea-ice model
- added missing matlab routines
- added test of thermodynamics parallelization
Modified Files:
Tag: release1
doc/tag-index pkg/seaice/SEAICE_FFIELDS.h
pkg/seaice/SEAICE_PARAMS.h pkg/seaice/adi.F
pkg/seaice/advect.F pkg/seaice/budget.F pkg/seaice/diffus.F
pkg/seaice/dynsolver.F pkg/seaice/groatb.F pkg/seaice/growth.F
pkg/seaice/lsr.F pkg/seaice/ostres.F
pkg/seaice/seaice_do_diags.F pkg/seaice/seaice_get_forcing.F
pkg/seaice/seaice_init.F pkg/seaice/seaice_model.F
pkg/seaice/seaice_readparms.F tools/genmake
verification/testscript
verification/global_ocean.90x40x15/input/eedata
verification/lab_sea/README
verification/lab_sea/code/CPP_EEOPTIONS.h
verification/lab_sea/code/CPP_EEOPTIONS_MPI.h
verification/lab_sea/code/CPP_OPTIONS.h
verification/lab_sea/code/SIZE.h
verification/lab_sea/code/SIZE_2x1.h
verification/lab_sea/input/data
verification/lab_sea/matlab/lookat_exp1.m
verification/lab_sea/matlab/lookat_exp2.m
verification/lab_sea/matlab/lookat_exp3.m
verification/lab_sea/matlab/lookat_exp4.m
verification/lab_sea/matlab/lookat_exp5.m
verification/lab_sea/matlab/lookat_exp6.m
verification/lab_sea/results/AREAtave.0000000010.data
verification/lab_sea/results/HEFFtave.0000000010.data
verification/lab_sea/results/UICEtave.0000000010.data
verification/lab_sea/results/VICEtave.0000000010.data
verification/lab_sea/results/output.txt
Added Files:
Tag: release1
verification/lab_sea/seaice.ps
verification/lab_sea/matlab/lookat_exp7.m
verification/lab_sea/matlab/mmax.m
verification/lab_sea/matlab/mypcolor.m
verification/lab_sea/matlab/myquiver.m
verification/lab_sea/matlab/readbin.m
verification/lab_sea/matlab/wysiwyg.m
Removed Files:
Tag: release1
verification/lab_sea/code/KPP_OPTIONS.h
Preparing release1_p8.
Preparing release1_p8.
Preparing release1_p7
Preparing release1_p7
o fixed the verification/global_ocean.90x40x15 experiment: - new bathymetry (the world according to A., JMC, and M.) - new initial fields and forcing fields (*.bin files) - new POLY3.COEFFS (for the next release one should switch to a full equation of state) - fixed several errors and redundancies in the data file - experiment uses looped cells - added matlab directory with diagnostic scripts for plotting of output
Preparing release1_p5
preparing next patch.
Creating yet another patch: release1_p4
Creating release1_p3 (patch 3).
Further modif's for next patch (p3).
Added tangent linear setup to verification/carbon/
Creating release1_p2 o partial recomputation bug fix for adjoint (kappar...) o switched-off sponge layer code o recomputation fix in thermodynamics
These changes constitute a patch to release1. They were made on a development branch called "release1_final" and are on the main trunk between chkpt44d_post and checkpoint44h_post along with other changes. This code is equivalent to chkpt44d_post with the following patches: - AD-related changes for GMRedi - fixes i KPP (delZ -> drF) - hook to OBCS songe layer code in external_forcing - errorMessageUnit non-zero in eeboot.F - modified test cost function and carbon verif.
Changes encapsulated by checkpoint43a-release1mods and chkpt44d_post
on the main trunk.
These are:
o added missing EXCLUDE_MONITOR flags
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi
(incompatible typ in MIN/MAX expressions caused problems
on IBM SP3)
o in genmake added variable MAKEDEPEND
plus resetting for case SunOS
o added timer_stats.c routine for IBM SP3
o removed variables in dynamics
o real fresh water flux implemented with non-linear free-surface.
o few fix (mask in shap_s2, EmPmR in external_field_load,
USE_NATURAL_BCS in solve_for_P);
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P
o merge of relevant stuff from the ecco-branch:
- genmake: removed $S64 overwrite for case SunOS
- pkg/exf: update and corrections for field swapping and obcs
- pkg/ecco: parameter lists for the_model_main, the_main_loop
harmonized between ECCO and MITgcm
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice
updated checkpointing_lev... lists for obcs
- model/src: minor changes in forward_step, plot_field
added directive for divided adjoint in the_main_loop
- pkg/mdsio: added mdsio_gl_slice
o check parameters & config (chkpt44a_pre,post)
o OBC and NonLin_FrSurf.
o fix bug in mom_vi_del2uv
o select when filters are applied ; add options to zonal_filter (data.zonfilt)
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection)
o update AIM experiments (NCEP input files)
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf)
o added some stuff for AD
These were merged with
cvs co -r release1 -P MITgcm
cd MITgcm
cvs update -kk
cvs update -j checkpoint43a-release1mods -j chkpt44d_post -d -P -kk
Merging changes on MAIN between checkpoint43 and checkpoint43a-release1mods
Command: cvs -q update -jcheckpoint43 -jcheckpoint43a-release1mods -d -P
These changes are most of the changes between c43 and c44 except those
that occured after "12:45 11 Jan 2002". As far as I can tell it is
checkpoint43 with the following mods:
o fix bug in mom_vi_del2uv
o select when filters are applied ; add options to zonal_filter (data.zonfilt) o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection)
o update AIM experiments (NCEP input files)
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf)
o added some stuff for AD
o Jamar wet-points
This update does not contain the following mods that are in checkpoint44
o bug fix in pkg/generic_advdiff/
- thread related bug, bi,bj arguments in vertical advection routines
o some changes to pkg/autodiff, pkg/cost, pkg/exf, pkg/ecco,
verification/carbon and model/src/ related to adjoint
o some new Matlab scripts for diagnosing model density
- utils/matlab/dens_poly3.m and ini_poly3.m
The list of exclusions is accurate based on a "cvs diff". The list of
inclusions is based on the record in doc/tag-index which may not be complete.
Annotation of c43.
Creating checkpoint42
Annotation for c41
Annotations for c40
Annotation for c40pre9
Checkpoint40pre8 (postponing c40)
Creating checkpoint40 --- no pre, no post, no nothin'
Creating checkpoint40pre7.
New tag checkpoint40pre6.
New tag: checkpoint40pre5
checkpoint40pre4
Doc. for checkpoint40pre3
Doc. for checkpoint40pre2
checkpoint39
checkpoint39
See doc/tag-index and doc/notes_c37_adj.txt Preparation for stand-alone autodifferentiability.
new tag
add a new tag (checkpoint36)
New checkpoint
Checkpoint34 (update).
Checkpoint34.
New tag (checkpoint32)
Notes for checkpoint32 added.
Comments for checkpoint31.
New tag.
New checkpoint (29).
Included documentation of changes from c27 to c28. (P.H.)
New checkpoint.
New checkpoint
Checkpoint 25
New checkpoint
New checkpoint
Entered checkpoint22 into tag-index.
New entry in tag-index for checkpoint21
Creating checkpoint20
Notes for tag checkpoint19.
Updates to tag0index for checkpoint18
Record updates for checkpoint17
Checkpoint16 documentation updates
CHanges to exchange routines for general tile <-> tile connectivity, DMA and shared memory communication hooks, variable width overlaps and TAMC reverse mode flag.
Consistent isomorphism changes
Added tag-index record for checkpoint13
Creating a tag in order to make a branch. See tag-index for info.
*** empty log message ***
New tag checkpoint11
Making tag checkpoint10
o General tidy-up. o MPI fix. Filename changes (meta/data). salbin*y stuff. o SST.bin SSS.bin added to verification/exp2
New tag and tag-index.
Fairly coplete 4 degree global intercomparison setup. Includes changes to make convective adjustment and hydrostatic pressure correct as well as IO for climatological datasets
Added tag-index record for checkpoint6
Added tag description
Added notes for new tag - checkpoint4
Added tag-index file for recording "release" information associated with a tag.
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