3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
release1_p9 |
ecco_c44_e20 |
7 |
o pkg/seaice |
o before major merges from the Scripps setup |
8 |
- removed GOTO's and added taf directives |
here are two small updates: |
9 |
- double precision constants to reduce the g77 (Linux) |
- field swapping for surface flux controls enabled |
10 |
to F77 (SGI) differences reported in release1_p8 |
(remains t.b.d. for atmos. state plus obcs) |
11 |
o tools/genmake |
- bug fix in active_file.F for xz-/yz- routines |
12 |
- added SGI options |
- added missing xz-/yz- routines to active_file_ad.F |
|
o verification/testscript |
|
|
- updated to that of checkpoint47a_post |
|
|
o verification/global_ocean.90x40x15/input/eedata |
|
|
- modified for SGI f77 compatibility |
|
|
o verification/lab_sea |
|
|
- added description of sea-ice model |
|
|
- added missing matlab routines |
|
|
- added test of thermodynamics parallelization |
|
|
|
|
|
release1_p8 |
|
|
o verification/natl_box: |
|
|
updating new external_fields_load routine |
|
|
o New package: pkg/seaice |
|
|
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
|
|
The sea-ice code is based on Hibler (1979-1980). |
|
|
Two sea-ice dynamic solvers, ADI and LSR, are included. |
|
|
In addition to computing prognostic sea-ice variables and diagnosing |
|
|
the forcing/external data fields that drive the ocean model, |
|
|
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
|
|
The implied surface heat flux is then stored in variable |
|
|
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
|
|
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
|
|
non-local transport term. Because this call precedes model |
|
|
thermodynamics, temperature under sea-ice may not be "exactly" at |
|
|
the freezing point by the time theta is dumped or time-averaged. |
|
|
N.B.: fairly large differences in accuracy occur across |
|
|
different platforms/compilers; comparison between |
|
|
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
|
|
generated output gives: |
|
|
T S U V |
|
|
C D M c m s m s m s m s |
|
|
n p a R g m m e . m m e . m m e . m m e . |
|
|
f n k u 2 i a a d i a a d i a a d i a a d |
|
|
g d e n d n x n . n x n . n x n . n x n . |
|
|
|
|
|
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
|
|
|
|
|
|
|
|
release1_p7 |
|
|
o GAD: |
|
|
- generated new common blocks to account for call of |
|
|
same gad routines with differing traceridentities |
|
|
(needed to modify tracerIdentity indices in GAD.h) |
|
|
- generated separate common blocks for case useCubedSphereExchange |
|
|
(Department of Futurology) |
|
|
- parameter lists to gmredi_?transport: added tracerIdentity |
|
|
- added new key indices to tamc.h |
|
|
o external_fields_load: |
|
|
- added this routine to TAF list |
|
|
- needed to make some common blocks global and additional storing |
|
|
along the same lines as exf package (checkpoint_lev?_directives.h) |
|
|
o exf: |
|
|
updated external forcing package |
|
|
- bug fixes carried over from ecco-branch |
|
|
(missing OBCS_OPTIONS.h in two routines) |
|
|
- enable easy to use "no forcing". |
|
|
- added exf I/O for atmospheric loading |
|
|
- added exf I/O for runoff data |
|
|
- transfered scaling between exf <-> MITgcm to exf namelist |
|
|
o Adding new verification experiment global_with_exf. |
|
|
This verification experiment is almost identical to the |
|
|
global_ocean.90x40x15 experiment, except that it uses |
|
|
the exf (and cal) package instead of the |
|
|
external_fields_load routine (cf README file). |
|
|
|
|
|
release1_p6 |
|
|
o fixed the verification/global_ocean.90x40x15 experiment: |
|
|
- new bathymetry (the world according to A., JMC, and M.) |
|
|
- new initial fields and forcing fields (*.bin files) |
|
|
- new POLY3.COEFFS (for the next release one should switch to a full |
|
|
equation of state) |
|
|
- fixed several errors and redundancies in the data file |
|
|
- experiment uses looped cells |
|
|
- added matlab directory with diagnostic scripts for plotting of output |
|
|
|
|
|
release1_p5 |
|
|
o import recent fix from MAIN branch: |
|
|
- use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
|
|
- change phiMin in exp1 (to agree with documentation) |
|
|
from checkpoint45 to checkpoint45a_post: |
|
|
- specific exchange for X-slice domain (case Ny=1) |
|
|
- argument futureIter of S/R obcs_calc missing in |
|
|
exp4 & internal_wave /code |
|
|
- solve_for_pressure : set cg2d_x to zero where OBCS are applied |
|
|
from checkpoint44f_post to checkpoint44g_post: |
|
|
- fix surface correction term in multiDimAdvection |
|
|
(affects plume_on_slope results |
|
|
o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
|
|
o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
|
|
o Adjoint-related bug fixes in kpp: |
|
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
|
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
|
|
o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
|
|
o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
|
|
o flow directives: |
|
|
- new for S/R do_the_model_io |
|
|
- enhanced for S/R checkpoint |
|
|
o added Eliassen Palm flux controls to gradient check package |
|
|
o new ctrl package |
|
|
- adopted from ECCO environment to enable optimization |
|
|
- added Eliassen Palm fluxes to controls |
|
|
- adjusted global_ocean.90x40x15/ and carbon/ accordingly |
|
|
|
|
|
release1_p4 |
|
|
o Removed f90 comments ("!") |
|
|
o Modified initialisations to enable exf package for MITgcm |
|
|
(without invoking ECCO_PACKAGE). |
|
|
o modifications to gradient check package (Martin Losch) |
|
|
- enable centered differences |
|
|
- modified format of standard output |
|
|
|
|
|
release1_p3 |
|
|
o added tangent linear setup to verification/carbon/ |
|
|
o added adjoint sensitivity setup to verification/global_ocean... |
|
|
o moved packages_init_variables before convective_adjustment |
|
|
o output of verif. which use GMRedi brought up-to-date with |
|
|
MAIN trunk (those were re-created after changes in GMRedi) |
|
|
o included CPP option SINGLE_LAYER_MODE |
|
|
to configure barotropic setup (Martin Losch). |
|
|
o Removed auxiliary variable in impldiff |
|
|
(caused numerical differences with MAIN trunk routine). |
|
|
o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
|
|
disable adcommon.h/g_common.h by default. |
|
|
o Cleaned exchange calls in cg2d. |
|
|
|
|
|
release1_p2 |
|
|
o fixed array boundary problem for adjoint |
|
|
(related to partial recomputation within subroutine |
|
|
related to dynamics -> calc_viscosity -> mom_... |
|
|
o fixed recomputation in thermodynamics |
|
|
o prepare (but not complete) recomputation problem in impldiff |
|
|
o fixed problem for adjoint of global_max |
|
|
o switched off sponge layer code in external_forcing |
|
13 |
|
|
14 |
release1_p1 |
ecco_c44_e19 |
15 |
o merged necessary patches: |
o merged necessary patches: |
16 |
- AD-related changes for GMRedi |
- AD-related changes for GMRedi |
17 |
- fixes i KPP (delZ -> drF) |
- fixes i KPP (delZ -> drF) |
18 |
- hook to OBCS songe layer code in external_forcing |
- hook to OBCS songe layer code in external_forcing |
19 |
- errorMessageUnit non-zero in eeboot.F |
- errorMessageUnit non-zero in eeboot.F |
20 |
- modified test cost function and carbon verif. |
- included GMREDI, EXACT_CONSERV to natl_box_adjoint verif. |
21 |
|
|
22 |
release1_chkpt44d_post = chkpt44d_post |
ecco_c44_e18 |
23 |
|
o sponge layer code for obcs was missing |
24 |
chkpt44d_pre,post |
- added hook in external_forcing.F |
25 |
o added missing EXCLUDE_MONITOR flags |
- added storing for TAF |
26 |
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
o new routine cost_init_barfiles to initialise |
27 |
(incompatible typ in MIN/MAX expressions caused problems |
adjoint fields adtbar, adsbar, adpsbar |
28 |
on IBM SP3) |
(needed in conjunction with corrected ladinit for active I/O) |
29 |
o in genmake added variable MAKEDEPEND |
o cleaned up and corrected order in packages_readparms, ecco_readparms |
30 |
plus resetting for case SunOS |
o corrected and simplified weights for obcs controls |
31 |
o added timer_stats.c routine for IBM SP3 |
- weight fields simplified |
32 |
o removed variables in dynamics |
- bug fix in ctrl_pack |
33 |
|
- no more write of control vector in ctrl_pack |
34 |
o real fresh water flux implemented with non-linear free-surface. |
o i/j index bug fixes in cost_ssh_mean |
35 |
|
|
36 |
chkpt44c_pre,post |
ecco_c44_e17 |
37 |
o few fix (mask in shap_s2, EmPmR in external_field_load, |
o bug fixes in cost package |
38 |
USE_NATURAL_BCS in solve_for_P); |
* wrong identifier for active I/O of monthly mean psbar |
39 |
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
(cost_averagesfields, cost_ssh) xx_psbar_dummy |
40 |
|
* cleaned all identifier for active I/O of monthly fields |
41 |
checkpoint44b_pre/_post |
* wrong ladinit in various cost routines |
42 |
o merge of relevant stuff from the ecco-branch: |
o merge with interval (chkpt44c_post - chkpt44d_post) |
43 |
|
* added missing EXCLUDE_MONITOR flags |
44 |
|
* changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
45 |
|
(incompatible typ in MIN/MAX expressions caused problems |
46 |
|
on IBM SP3) |
47 |
|
* in genmake added variable MAKEDEPEND |
48 |
|
plus resetting for case SunOS |
49 |
|
added timer_stats.c routine for IBM SP3 |
50 |
|
* removed variables in dynamics |
51 |
|
|
52 |
|
ecco_c44_e16 |
53 |
|
o new ECCO checkpoint, the first since ecco_c43_e15 |
54 |
|
which is branched from MITgcm. |
55 |
|
All changes were merged in between (see ecco-branch-mod? tags). |
56 |
|
o last changes: |
57 |
|
* assuming path for TAF and TAMC are known (e.g. in $path) |
58 |
|
* genmake: |
59 |
|
- added tools/xmakedepend to circumvene shortcoming of |
60 |
|
SUN's makedepend (size too small) |
61 |
|
- invoking ../tools/xmakedepend instead of makedepend |
62 |
|
- changed compiler flags for case SunOS |
63 |
|
|
64 |
|
ecco-branch-mod5 |
65 |
|
o mod's to reproduce open boundary run |
66 |
|
o enable field swapping for OB's and climatology |
67 |
|
o update store directives for OB control |
68 |
|
o added option ALLOW_OBCS_PRESCRIBE |
69 |
|
o call of getobcs now out of obcs_calc (param. list modified) |
70 |
|
|
71 |
|
ecco-branch-mod4 |
72 |
|
o this is the second part of changes necessary to reconcile |
73 |
|
the natl_box_adjoint verification (with and without grdchk). |
74 |
|
>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
75 |
|
>>>!!! AND ecco-branch-mod4 !!!<<< |
76 |
|
>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
77 |
- genmake: removed $S64 overwrite for case SunOS |
- genmake: removed $S64 overwrite for case SunOS |
78 |
- pkg/exf: update and corrections for field swapping and obcs |
- pkg/exf: update and corrections for field swapping and obcs |
79 |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
81 |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
82 |
updated checkpointing_lev... lists for obcs |
updated checkpointing_lev... lists for obcs |
83 |
- model/src: minor changes in forward_step, plot_field |
- model/src: minor changes in forward_step, plot_field |
|
added directive for divided adjoint in the_main_loop |
|
84 |
- pkg/mdsio: added mdsio_gl_slice |
- pkg/mdsio: added mdsio_gl_slice |
85 |
|
|
86 |
o check parameters & config (chkpt44a_pre,post) |
ecco-branch-mod3 |
87 |
o OBC and NonLin_FrSurf. |
o this is the first part of changes necessary to reconcile |
88 |
|
natl_box_adjoint verification (with and without grdchk). |
89 |
|
This set of changes is relevant for ECCO only. |
90 |
|
The next set/tag of changes (ecco-branch-mod4) |
91 |
|
should be merged into the main trunk. |
92 |
|
- update some options |
93 |
|
- parameter lists of ecco_the_model_main and ecco_the_main_loop |
94 |
|
differed from those of the MITgcm counterparts. |
95 |
|
|
96 |
|
ecco-branch-mod2 |
97 |
|
o update ecco-branch-mod1 to checkpoint44 |
98 |
|
o exclude from updates: |
99 |
|
- verification/ |
100 |
|
- adjoint/ |
101 |
|
- pkg/cost |
102 |
|
- pkg/ctrl |
103 |
|
- pkg/ecco |
104 |
|
- pkg/obcs |
105 |
|
- model/src/the_model_main.F |
106 |
|
- model/src/the_main_loop.F |
107 |
|
|
108 |
checkpoint44 |
checkpoint44 |
109 |
|
o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
110 |
o fix bug in mom_vi_del2uv |
o fix bug in mom_vi_del2uv |
|
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
|
|
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
|
|
o update AIM experiments (NCEP input files) |
|
|
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
|
111 |
o added some stuff for AD |
o added some stuff for AD |
112 |
|
|
113 |
|
ecco-branch-mod1 |
114 |
|
o based on c43 |
115 |
|
o replaced packages cost, ctrl, ecco, obcs |
116 |
|
o removed MITgcm verif.'s, added ECCO verif.'s |
117 |
|
o added lsopt, optim for line search optimization. |
118 |
|
|
119 |
checkpoint43 |
checkpoint43 |
120 |
o added two new advection tests |
o added two new advection tests |
121 |
o added global 4x4 degree ocean test |
o added global 4x4 degree ocean test |