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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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release1_p8 |
ecco_c44_e20 |
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o verification/natl_box: |
o before major merges from the Scripps setup |
| 8 |
updating new external_fields_load routine |
here are two small updates: |
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o New package: pkg/seaice |
- field swapping for surface flux controls enabled |
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Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
(remains t.b.d. for atmos. state plus obcs) |
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The sea-ice code is based on Hibler (1979-1980). |
- bug fix in active_file.F for xz-/yz- routines |
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Two sea-ice dynamic solvers, ADI and LSR, are included. |
- added missing xz-/yz- routines to active_file_ad.F |
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In addition to computing prognostic sea-ice variables and diagnosing |
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the forcing/external data fields that drive the ocean model, |
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SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
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The implied surface heat flux is then stored in variable |
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surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
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kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
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non-local transport term. Because this call precedes model |
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thermodynamics, temperature under sea-ice may not be "exactly" at |
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the freezing point by the time theta is dumped or time-averaged. |
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N.B.: fairly large differences in accuracy occur across |
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different platforms/compilers; comparison between |
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g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
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generated output gives: |
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T S U V |
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C D M c m s m s m s m s |
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n p a R g m m e . m m e . m m e . m m e . |
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f n k u 2 i a a d i a a d i a a d i a a d |
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g d e n d n x n . n x n . n x n . n x n . |
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Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
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release1_p7 |
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o GAD: |
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- generated new common blocks to account for call of |
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same gad routines with differing traceridentities |
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(needed to modify tracerIdentity indices in GAD.h) |
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- generated separate common blocks for case useCubedSphereExchange |
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(Department of Futurology) |
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- parameter lists to gmredi_?transport: added tracerIdentity |
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- added new key indices to tamc.h |
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o external_fields_load: |
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- added this routine to TAF list |
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- needed to make some common blocks global and additional storing |
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along the same lines as exf package (checkpoint_lev?_directives.h) |
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o exf: |
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updated external forcing package |
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- bug fixes carried over from ecco-branch |
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(missing OBCS_OPTIONS.h in two routines) |
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- enable easy to use "no forcing". |
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- added exf I/O for atmospheric loading |
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- added exf I/O for runoff data |
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- transfered scaling between exf <-> MITgcm to exf namelist |
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o Adding new verification experiment global_with_exf. |
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This verification experiment is almost identical to the |
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global_ocean.90x40x15 experiment, except that it uses |
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the exf (and cal) package instead of the |
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external_fields_load routine (cf README file). |
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release1_p6 |
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o fixed the verification/global_ocean.90x40x15 experiment: |
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- new bathymetry (the world according to A., JMC, and M.) |
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- new initial fields and forcing fields (*.bin files) |
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- new POLY3.COEFFS (for the next release one should switch to a full |
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equation of state) |
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- fixed several errors and redundancies in the data file |
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- experiment uses looped cells |
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- added matlab directory with diagnostic scripts for plotting of output |
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release1_p5 |
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o import recent fix from MAIN branch: |
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- use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
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- change phiMin in exp1 (to agree with documentation) |
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from checkpoint45 to checkpoint45a_post: |
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- specific exchange for X-slice domain (case Ny=1) |
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- argument futureIter of S/R obcs_calc missing in |
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exp4 & internal_wave /code |
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- solve_for_pressure : set cg2d_x to zero where OBCS are applied |
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from checkpoint44f_post to checkpoint44g_post: |
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- fix surface correction term in multiDimAdvection |
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(affects plume_on_slope results |
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o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
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o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
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o Adjoint-related bug fixes in kpp: |
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- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
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- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
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o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
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o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
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o flow directives: |
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- new for S/R do_the_model_io |
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- enhanced for S/R checkpoint |
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o added Eliassen Palm flux controls to gradient check package |
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o new ctrl package |
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- adopted from ECCO environment to enable optimization |
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- added Eliassen Palm fluxes to controls |
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- adjusted global_ocean.90x40x15/ and carbon/ accordingly |
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release1_p4 |
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o Removed f90 comments ("!") |
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o Modified initialisations to enable exf package for MITgcm |
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(without invoking ECCO_PACKAGE). |
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o modifications to gradient check package (Martin Losch) |
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- enable centered differences |
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- modified format of standard output |
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release1_p3 |
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o added tangent linear setup to verification/carbon/ |
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o added adjoint sensitivity setup to verification/global_ocean... |
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o moved packages_init_variables before convective_adjustment |
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o output of verif. which use GMRedi brought up-to-date with |
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MAIN trunk (those were re-created after changes in GMRedi) |
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o included CPP option SINGLE_LAYER_MODE |
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to configure barotropic setup (Martin Losch). |
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o Removed auxiliary variable in impldiff |
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(caused numerical differences with MAIN trunk routine). |
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o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
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disable adcommon.h/g_common.h by default. |
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o Cleaned exchange calls in cg2d. |
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release1_p2 |
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o fixed array boundary problem for adjoint |
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(related to partial recomputation within subroutine |
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related to dynamics -> calc_viscosity -> mom_... |
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o fixed recomputation in thermodynamics |
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o prepare (but not complete) recomputation problem in impldiff |
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o fixed problem for adjoint of global_max |
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o switched off sponge layer code in external_forcing |
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release1_p1 |
ecco_c44_e19 |
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o merged necessary patches: |
o merged necessary patches: |
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- AD-related changes for GMRedi |
- AD-related changes for GMRedi |
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- fixes i KPP (delZ -> drF) |
- fixes i KPP (delZ -> drF) |
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- hook to OBCS songe layer code in external_forcing |
- hook to OBCS songe layer code in external_forcing |
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- errorMessageUnit non-zero in eeboot.F |
- errorMessageUnit non-zero in eeboot.F |
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- modified test cost function and carbon verif. |
- included GMREDI, EXACT_CONSERV to natl_box_adjoint verif. |
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release1_chkpt44d_post = chkpt44d_post |
ecco_c44_e18 |
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o sponge layer code for obcs was missing |
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chkpt44d_pre,post |
- added hook in external_forcing.F |
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o added missing EXCLUDE_MONITOR flags |
- added storing for TAF |
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o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
o new routine cost_init_barfiles to initialise |
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(incompatible typ in MIN/MAX expressions caused problems |
adjoint fields adtbar, adsbar, adpsbar |
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on IBM SP3) |
(needed in conjunction with corrected ladinit for active I/O) |
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o in genmake added variable MAKEDEPEND |
o cleaned up and corrected order in packages_readparms, ecco_readparms |
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plus resetting for case SunOS |
o corrected and simplified weights for obcs controls |
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o added timer_stats.c routine for IBM SP3 |
- weight fields simplified |
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o removed variables in dynamics |
- bug fix in ctrl_pack |
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- no more write of control vector in ctrl_pack |
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o real fresh water flux implemented with non-linear free-surface. |
o i/j index bug fixes in cost_ssh_mean |
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chkpt44c_pre,post |
ecco_c44_e17 |
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o few fix (mask in shap_s2, EmPmR in external_field_load, |
o bug fixes in cost package |
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USE_NATURAL_BCS in solve_for_P); |
* wrong identifier for active I/O of monthly mean psbar |
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o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
(cost_averagesfields, cost_ssh) xx_psbar_dummy |
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* cleaned all identifier for active I/O of monthly fields |
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checkpoint44b_pre/_post |
* wrong ladinit in various cost routines |
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o merge of relevant stuff from the ecco-branch: |
o merge with interval (chkpt44c_post - chkpt44d_post) |
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* added missing EXCLUDE_MONITOR flags |
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* changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
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(incompatible typ in MIN/MAX expressions caused problems |
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on IBM SP3) |
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* in genmake added variable MAKEDEPEND |
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plus resetting for case SunOS |
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added timer_stats.c routine for IBM SP3 |
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* removed variables in dynamics |
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ecco_c44_e16 |
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o new ECCO checkpoint, the first since ecco_c43_e15 |
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which is branched from MITgcm. |
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All changes were merged in between (see ecco-branch-mod? tags). |
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o last changes: |
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* assuming path for TAF and TAMC are known (e.g. in $path) |
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* genmake: |
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- added tools/xmakedepend to circumvene shortcoming of |
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SUN's makedepend (size too small) |
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- invoking ../tools/xmakedepend instead of makedepend |
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- changed compiler flags for case SunOS |
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ecco-branch-mod5 |
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o mod's to reproduce open boundary run |
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o enable field swapping for OB's and climatology |
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o update store directives for OB control |
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o added option ALLOW_OBCS_PRESCRIBE |
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o call of getobcs now out of obcs_calc (param. list modified) |
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ecco-branch-mod4 |
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o this is the second part of changes necessary to reconcile |
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the natl_box_adjoint verification (with and without grdchk). |
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>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
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>>>!!! AND ecco-branch-mod4 !!!<<< |
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>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
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- genmake: removed $S64 overwrite for case SunOS |
- genmake: removed $S64 overwrite for case SunOS |
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- pkg/exf: update and corrections for field swapping and obcs |
- pkg/exf: update and corrections for field swapping and obcs |
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- pkg/ecco: parameter lists for the_model_main, the_main_loop |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
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- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
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updated checkpointing_lev... lists for obcs |
updated checkpointing_lev... lists for obcs |
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- model/src: minor changes in forward_step, plot_field |
- model/src: minor changes in forward_step, plot_field |
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added directive for divided adjoint in the_main_loop |
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- pkg/mdsio: added mdsio_gl_slice |
- pkg/mdsio: added mdsio_gl_slice |
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o check parameters & config (chkpt44a_pre,post) |
ecco-branch-mod3 |
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o OBC and NonLin_FrSurf. |
o this is the first part of changes necessary to reconcile |
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natl_box_adjoint verification (with and without grdchk). |
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This set of changes is relevant for ECCO only. |
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The next set/tag of changes (ecco-branch-mod4) |
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should be merged into the main trunk. |
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- update some options |
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- parameter lists of ecco_the_model_main and ecco_the_main_loop |
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differed from those of the MITgcm counterparts. |
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ecco-branch-mod2 |
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o update ecco-branch-mod1 to checkpoint44 |
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o exclude from updates: |
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- verification/ |
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- adjoint/ |
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- pkg/cost |
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- pkg/ctrl |
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- pkg/ecco |
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- pkg/obcs |
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- model/src/the_model_main.F |
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- model/src/the_main_loop.F |
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checkpoint44 |
checkpoint44 |
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o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
| 110 |
o fix bug in mom_vi_del2uv |
o fix bug in mom_vi_del2uv |
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o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
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o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
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o update AIM experiments (NCEP input files) |
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o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
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o added some stuff for AD |
o added some stuff for AD |
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ecco-branch-mod1 |
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o based on c43 |
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o replaced packages cost, ctrl, ecco, obcs |
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o removed MITgcm verif.'s, added ECCO verif.'s |
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o added lsopt, optim for line search optimization. |
| 118 |
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checkpoint43 |
checkpoint43 |
| 120 |
o added two new advection tests |
o added two new advection tests |
| 121 |
o added global 4x4 degree ocean test |
o added global 4x4 degree ocean test |
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