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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/exf: |
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- interpolation with #undef EXF_INTERP_USE_DYNALLOC: move buffer size |
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definition outside EXF_PARAM.h in new header file: EXF_INTERP_SIZE.h; |
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use fixed size buffer (passed to S/R EXF_INTERP & EXF_INTERP_UV) to |
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avoid any dynamic allocation ; |
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- S/R EXF_CHECK: add new check & stop when file-name is defined but not |
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read-in ; add warning when file is read-in but not used within pkg/exf ; |
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+ check for buffer-size (if #undef EXF_INTERP_USE_DYNALLOC). |
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- update exf_summary.F (print {FLD}RepCycle). |
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o verification/global_with_exf: |
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- switch on exf interpolation in AD test (just like the forward test) |
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o pkg/mom_vecinv: |
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- add storage directives to avoid recomputations within mom_vecinv.F |
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which were generating seg. fault with gfortran -devel |
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o pkg/ctrl, pkg/smooth: |
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- initialize array halos which were generating seg. fault with |
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gfortran -devel in adjoint mode |
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o pkg/exf: |
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- for each input field, enable to specify a field specific repeat-cycle |
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({FLD}RepCycle) which defaults to pkg/exf main "repeatPeriod". |
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o verification/lab_sea: |
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- update AD results of primary test and noseaicedyn test after switching |
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to new version of TAF (5.3.13 vs 5.3.2 before); agreement with gradient |
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check stays about the same. |
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o pkg/exf: |
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- fix bug in exf_zenithangle.F for cases select_ZenAlbedo > 0 with useCAL=T. |
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- exf_check: MAX_LAT_INC need only be "loc_nlat-1", not equal to loc_nlat |
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o pkg/bling, USE_EXFCO2 code: |
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- add parameter "apco2RepCycle" (set to pkg/exf "repeatPeriod" by default); |
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- update calls to EXF S/R (use new version: EXF_INIT_FLD & EXF_SET_FLD). |
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o pkg/exf: |
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- rename S/R EXF_INIT to EXF_INIT_VARIA ; |
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- add arguments: fldName (for debug msg) and fldRepeatCycle (set to |
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repeatPeriod) to S/R EXF_SET_UV and to S/R EXF_SET_GEN (renamed EXF_SET_FLD) |
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and update calls in pkg/exf calling S/R (exf_getffields.F & exf_getclim.F) ; |
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- add argument: fldName (for debug msg) to S/R EXF_INIT_GEN (renamed |
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EXF_INIT_FLD) and update calls in exf_init_varia.F |
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- For now, for backward compatibility, keep a simplified version of S/Rs |
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EXF_SET_GEN & EXF_INIT_GEN in file exf_set_gen.F |
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- add and pass new arguments: fldName (for debug msg) and fldRepeatCycle |
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to S/R EXF_GetFFieldRec ; update calls in pkg/obcs/obcs_exf_load.F |
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o tools/genmake2: |
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- replace "bc -l" (only used once) by "expr" (already used). |
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o verification/global_ocean.cs32x15: |
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- turn off pkg/cal (useCAL=F) in secondary FWD exp. "icedyn". |
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Note: exf setting (data.exf) can be compared to other exf secondary exp |
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"seaice" (kept with useCAL=T) which has same time dependent forcing. |
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checkpoint66d (2017/02/13) |
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o pkg/exf: |
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- remove setting of useCAL=T when using pkg/exf (useEXF=T); add warning |
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early on (in packages_boot.F) to stress this change in pkg setting. |
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- In (most) verification exp. that use pkg/exf, add useCAL=.TRUE. to data.pkg |
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o model/src: |
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- move call to ecco_phys to end of time step; this may induce minor |
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cost function changes by shifting time averages by one time step |
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for some variables; this revision resulted in changed adjoint results |
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in MITgcm_contrib/verification_other/global_oce_cs32 |
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o pkg/exf: |
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- Change EXF_READ_EVAP to only activate code within #ifdef ALLOW_ATM_TEMP ; |
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this prevents to read evap when ALLOW_ATM_TEMP is undef and other fields, |
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e.g. precip, are not available. |
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o pkg/flt: |
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- flt_init_varia.F: use pickupSuff if specified |
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- add code (within #ifdef DEVEL_FLT_EXCH2) and test case as a first, |
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intermediate, step towards completing pkg/exch2 support within pkg/flt; |
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ifdef DEVEL_FLT_EXCH2 then: |
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- flt_init_fixed.F: comment out stop |
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- flt_exch2.F: conserve ipart, jpart (grid coordinates) |
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- exch2_recv_get_vec.F: transform ipart, jpart (grid coordinates) |
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- flt_mapping.F: attempt to fix longitude diagnostic near date-line |
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- flt_init_varia.F: hack initialization (for testing purposes w. LLC90) |
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o tools/genmake2 & pkg/pkg_depend: |
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- define new type of pkg dependency rule ("=pkg_x"), less strict than |
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the "+" rule, that add the dependent pkg (pkg_x) unless it's disabled |
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(-pkg_x in packages.conf). |
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- change pkg/exf dependency rule from "exf +cal" to "exf =cal"; |
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- add "+cal" to dependency list of pkg/ecco (needed to compile). |
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- simplify FWD experiment "offline_exf_seaice" by removing pkg/cal. |
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o utils/matlab: |
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- adding ocean_basin routines for defining basin masks. |
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o pkg/exf: |
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- new S/R EXF_GETFFIELD_START replacing EXF_GETFIELD_START, but with more |
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arguments, allowing to check (and stop) if parameter setting of |
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{FLD}startdate1 & date2 and of {FLD}StartTime are consistent with |
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useCAL= T or F. For now, kept a simplified version of EXF_GETFIELD_START |
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for backward compatibility. |
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- change accordingly calls in exf_init_fixed.F + default {FLD}StartTime in |
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exf_readparms.F ; apply same changes to pkg/icefront (for SGRunOff field). |
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o pkg/bling (USE_EXFCO2 code): |
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- fix missing setting of apco2StartTime according to apco2startdate1 & date2 |
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by adding a call to S/R EXF_GETFFIELD_START. |
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o pkg/exf: |
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- allows to compile without pkg/cal (but disabled by current dependency |
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rules, i.e., default "pkg/pkg_depend"). Minimal changes to enable to |
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run with useCAL=F ; this involves setting directly {FLD}StartTime instead |
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of {FLD}startdate1 & date2 ; consistency check not yet coded. |
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o verification/global_ocean.cs32x15: |
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- fix all data.exf for a shift of 1 day in all field startdate1 so that it now |
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corresponds to middle of 1rst month; update outputs (2 fwd + 3 adm + 3 tlm). |
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o pkg/exf: |
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- allow to use EXF_ZENITHANGLE without pkg/cal + simplify (saving some |
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calculations); change FWD experiment global_ocean.cs32x15 |
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(#define ALLOW_ZENITHANGLE) to test/check that this code compiles. |
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o pkg/exf: |
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- In preparation for addition to NAMELIST, rename internal (_RL) parameter |
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{FIELD}startdate to {FIELD}StartTime |
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Note: new name also fit better the content, i.e, a start time in second. |
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o eesupp/src: |
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- add 1 argument to S/R EEBOOT & EEBOOT_MINIMAL for interface with ESMF |
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o pkg/exf: |
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- add option ALLOW_READ_TURBFLUXES (and corresponding set of parameters) |
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to allow to read-in Sensible & Latent Heat flux ; |
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- simplify pkg/exf main options: |
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1) move small piece of code (case ALLOW_ATM_TEMP undef) out of |
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exf_bulkformulae.F into exf_wind.F so that exf_bulkformulae.F is |
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compiled only when both ALLOW_ATM_TEMP & ALLOW_BULKFORMULAE are defined; |
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2) make call to EXF_RADIATION and to EXF_WIND independent of CPP option |
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ALLOW_BULKFORMULAE which now only applies to S/R EXF_BULKFORMULAE ; |
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3) improve options documentation in EXF_OPTIONS.h. |
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o pkg/ecco: |
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- cost_gencost_customize.F,ecco.h,ecco_phys.F,ecco_readparms.F, and |
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ecco_summary.F: add passive tracer cost functions to gencost; |
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m_ptracer and m_boxmean_ptracer |
| 131 |
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o pkg/ctrl: |
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- ctrl_map_forcing.F: pass myIter and myTime to ctrl_map_forcing as input |
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parameters; move myIter .EQ. nIter0 inside ctrl_map_forcing; add to list |
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of implemented gentim2d contol parameters: xx_qnet, xx_empmr, xx_qsw, |
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xx_sst, xx_sss, xx_pload, xx_saltflux, xx_fu, xx_fv, xx_fe, xx_fn |
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o model/src: |
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- forward_step.F: pass myIter and myTime to ctrl_map_forcing as input |
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parameters; move myIter .EQ. nIter0 inside ctrl_map_forcing |
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o pkg/exf: |
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- exf_getffields.F: add to list of implemented gentim2d contol parameters: |
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xx_lwflux, xx_swflux, xx_evap, xx_apressure, xx_areamask |
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checkpoint66c (2017/01/19) |
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o verification: |
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- add new option "-src" to testreport to only produce source code (*.f), |
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including taf output src code (if using '-adm'/'-tlm' option). |
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o pkg/exf: |
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- add saltflx :: Net upward salt flux in psu.kg/m^2/s |
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o pkg/diagnostics: |
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- add run-time variable diagMdsDir to specify a subdirectory for |
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diagnostic output when mds is being used and mdsioLocalDir is not. |
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o pkg/mnc: |
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- mnc_utils.F: edit stop message |
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o pkg/autodiff: |
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- autodiff_ini_model_io.F: PRINT_MESSAGE, clean-up comments, add _*_MASTER, |
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add HAVE_SYSTEM bracket around system call to mkdir |
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o pkg/profiles: |
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- profiles_findunit.F, profiles_init_fixed.F, profiles_interp.F, |
| 159 |
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profiles_readparms.F: call ALL_PROC_DIE before 'stop' |
| 160 |
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- profiles_ini_io.F: use PRINT_MESSAGE, clean-up comments, add _*_MASTER, |
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add HAVE_SYSTEM bracket around system call to mkdir |
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o pkg/smooth: |
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- smooth_filtervar2d.F, smooth_filtervar3d.F: call ALL_PROC_DIE before 'stop' |
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- smooth_init2d.F, smooth_init3d.F: move print statements to readparms |
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- smooth_readparms.F: add cleaner print statements from smooth_init?d.F |
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o pkg/exf: |
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- check: count errors and stop cleanly at the end (call to ALL_PROC_DIE); |
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issue error message when climsst_interpMethod.GT.0 and climsst_lon_inc > 500 |
| 169 |
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generalize tests on interpMethod, nlat, and lon_inc to all exf variables. |
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- summary: skip detailed field report if not used (empty file-name). |
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o tools/xmakedepend: |
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- In case line editor "ed" is missing, switch to "sed" command to clean-up |
| 173 |
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Makefile from previous dependencies (anything after "# DO NOT DELETE" line). |
| 174 |
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o pkg/exf: |
| 175 |
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- change definition of "hflux" input file to always include Short-Wave; |
| 176 |
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this is now consistent with hflux computation (if using bulk-formulae) |
| 177 |
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and hflux diagnostic & documentation (in EXF_FIELDS.h). |
| 178 |
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|
| 179 |
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checkpoint66b (2016/12/01) |
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o model & momentum pkgs: |
| 181 |
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- implement fully implicit bottom friction combined with implicit surf. |
| 182 |
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pressure, for now, only in hydrostic formulation: |
| 183 |
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+ to use: compile with #define ALLOW_SOLVE4_PS_AND_DRAG in CPP_OPTIONS.h |
| 184 |
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and run with selectImplicitDrag=2 ; |
| 185 |
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+ currently missing diagnostics of bottom drag and vert. viscosity tendency; |
| 186 |
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- partial implicit time-stepping (bot. friction + vert. visc first, then |
| 187 |
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surf. press) corresponding to selectImplicitDrag=1 should be applicable |
| 188 |
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to NH formulation but not available until we solve for surf. pressure |
| 189 |
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increment (instead of full etaN). |
| 190 |
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- change exp. global_ocean.cs32x15.thsice to test implicit bottom drag |
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with implicit vertical viscosity. |
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o pkg/seaice: add linear remapping scheme (Lipscomb 2001) to ITD model |
o pkg/seaice: add linear remapping scheme (Lipscomb 2001) to ITD model |
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- this is a first version that includes many regularisations that may |
- this is a first version that includes many regularisations that may |
| 194 |
not all be necessary, to be sorted out, |
not all be necessary, to be sorted out, |
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- turned on by runtime parameter SEAICEuseLinRemapITD (true by default) |
- turned on by runtime parameter SEAICEuseLinRemapITD (true by default) |
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- change one verification experiment in seaice_itd to use and test new code |
- change one verification experiment in seaice_itd to use and test new code |
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- seaice_growth: catch a case where the argument of log can be zero |
- seaice_growth: catch a case where the argument of log can be zero |
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or smaller (important for code stability) |
or smaller (important for code stability) |
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o model/src: |
o model/src: |
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- modify SOLVE_DIAGONAL_LOWMEMORY version of solve_tridiagonal.F |
- modify SOLVE_DIAGONAL_LOWMEMORY version of solve_tridiagonal.F |
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