4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
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|
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o pkg/seaice: |
8 |
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- Rename SEAICE_VECTORIZE_LSR_ZEBRA to SEAICE_LSR_ZEBRA and define it |
9 |
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in lab_sea forward experiment (changes results -> updated) |
10 |
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o pkg/seaice: modify seaice_lsr.F in order to improve the gradient |
11 |
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computations; for SEAICE_VECTORIZE_LSR |
12 |
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- move the loops over which the tridiagonal solvers (seaice_lsr_tridiagu/v) |
13 |
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sweep to the outside, |
14 |
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- remove store directives and add "CADJ loop sequential" directives |
15 |
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in analogy to model/src/solve_tridiagonal.F |
16 |
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- replace many "#ifdef SEAICE_VECTORIZE_LSR_ZEBRA" by variable loop |
17 |
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boundaries to yield more readable code. This has also the charming side |
18 |
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effect that your can use SEAICE_VECTORIZE_LSR_ZEBRA without |
19 |
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SEAICE_VECTORIZE_LSR (i.e. adjoint without recomputations in |
20 |
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seaice_lsr_tridiagu/v now requires either of these flags, vectorization |
21 |
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still requires SEAICE_VECTORIZE_LSR with SEAICE_VECTORIZE_LSR_ZEBRA as |
22 |
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an additional option) |
23 |
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The tridiagonal solvers are now completely analoguous to solve_tridiagonal.F |
24 |
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but the adjoint gradients (which are affected by this change) still explode. |
25 |
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o coupler (atm & ocn _compon_interf): |
26 |
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- avoid using Exch2 IO mapping if not suitable. |
27 |
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|
28 |
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>>>>>>> 1.2160 |
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checkpoint65m (2015/06/15) |
30 |
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o pkg/layers: |
31 |
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- clean-up old parameters setting (from Sep 2012): |
32 |
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+ remove old parameters setting from common block (declared locally); |
33 |
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+ stop if any old parameter is mixed with new parameters; |
34 |
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+ check for valid or consistent parameter setting (e.g., layers_name) |
35 |
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- check that layers_bounds for Pot.Density are in the right range; |
36 |
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this is supposed to catch un-updated setting after recently shifting |
37 |
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potential density field "prho" by -1000 (now in "sigma" scale). |
38 |
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o pkg/layers: |
39 |
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- Added missing call to layers_fill for keeping track of tottend in |
40 |
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pkg/diagnostics/diagnostics_fill_state.F |
41 |
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o pkg/layers: |
42 |
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- added CPP flux LAYERS_FINEGRID_DIAPYCNAL to disable fine-grid binning |
43 |
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of diapycnal fluxes |
44 |
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o pkg/layers: |
45 |
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- reverted changes to interpolation to previous treatment; there |
46 |
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was never actually a problem |
47 |
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o pkg/layers: |
48 |
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- fix interpolation of layers tracers in the presence of partial cells |
49 |
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- add lots of new functionality to compute water mass transformation |
50 |
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(enabled by CPP flag LAYERS_THERMODYNAMICS) |
51 |
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- add new calls from main code (diags_oceanic_surf_flux.F, |
52 |
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thermodynamics.F, impldiff.F) and gad to save the necessary fields |
53 |
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for layers_thermodynamics calculations |
54 |
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o pkg/ptracers: |
55 |
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- add capability of stepping a passive tracer forward without advection |
56 |
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by setting PTRACERS_advScheme to 0. |
57 |
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o pkg/diagnostics: |
58 |
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- add few (threads) _BARRIER around any update of "diag_pkgStatus". |
59 |
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o pkg/layers: |
60 |
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- shift potential density field "prho" by -1000 for density layer averaging so |
61 |
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that it corresponds to usual "sigma" definition (i.e., rho(p=const)-1000); |
62 |
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Note that density bin boundaries (layers_bounds in data.layers) have |
63 |
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to be set accordingly (i.e., shifted, in sigma scale). |
64 |
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o pkg/layers: |
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- fix snap-shot output of layer thickness @ V.pt and output of pot.density |
66 |
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- fix calculation of layer non-weighted velocity and layer probability |
67 |
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- add diagnostics for pot.density used for layer averaging |
68 |
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o pkg/seaice: |
69 |
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- seaice_calc_viscosity.F: change computation of deltaC**2 to ensure |
70 |
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positiveness, modify a few comments and improve variable names, |
71 |
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- the changed computation of deltaC affects most seaice-related |
72 |
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experiments at the truncation level. |
73 |
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seaice_itd.thermo is affected by far the most, with |
74 |
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only 7 digits of agreement remaining; update experiments. |
75 |
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|
76 |
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checkpoint65l (2015/05/04) |
77 |
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o pkg/shelfice: |
78 |
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- in shelfice_thermodynamics.F, if SHELFICEBoundaryLayer=.true., then set |
79 |
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factor drKp1 to zero where it is negative (ie. do not use |
80 |
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SHELFICEBoundaryLayer if hFacC>1) |
81 |
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- the same for factor drLoc in shelfice_forcing.F |
82 |
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o tools/genmake2: move FEXTRAFLAGS from FFLAGS to FOPTIM to avoid a problem |
83 |
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with modules in ptracers, when using testreport option "-small_f" |
84 |
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o pkg/seaice/seaice_growth.F (in case of SEAICE_ITD) |
85 |
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- replace tmpscal1**1.36 by faster exp(1.36*log(tmpscal1)) |
86 |
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o verification/testreport |
87 |
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- add new option -small_f |
88 |
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with this option testreport first makes the target small_f (*.f files) |
89 |
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before running make (all). This is useful for explicit inlining when |
90 |
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all sources need to be full available. |
91 |
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o pkg/exf/exf_interp.F: |
92 |
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remove previous changes related to reverse (decreasing) input grids latitude |
93 |
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|
94 |
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checkpoint65k (2015/04/01) |
95 |
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o pkg/ecco: |
96 |
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fix missing cosphi initialization; use eccoiter in place of optimcycle; |
97 |
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if autodiff is not compiled then use READ_REC_XY_RL/READ_REC_XYZ_RL |
98 |
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instead of active read/write |
99 |
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o pkg/ctrl: |
100 |
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if autodiff is not compiled then use READ_REC_XY_RL/READ_REC_XYZ_RL |
101 |
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instead of active read/write. |
102 |
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o pkg/autodiff: make autodiff_readparms.F and autodiff_whtapeio_sync.F |
103 |
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return if .NOT.useAUTODIFF |
104 |
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o pkg/seaice: add CPP brackets (cost function related). |
105 |
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o model/src: |
106 |
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add useAUTODIFF run time switch. |
107 |
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o pkg/exf/exf_interp.F: |
108 |
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add code to allow input grids with latitude starting in the north (i.e. when |
109 |
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j=1 corresponds to northern edge of field); modify global_with_exf to test |
110 |
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this feature. |
111 |
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o verification/testreport: |
112 |
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- replace "grep -A3" with POSIX conformal sed command, because there are |
113 |
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implementations of grep that cannot do contextual searches |
114 |
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- replace "cat -n" by "nl" (two occurrences), because not all implementations |
115 |
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of "cat" have the option "-n" |
116 |
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o model/src: |
117 |
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add new file gsw_teos10.F that contains 3 functions, more or less a copy |
118 |
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of the gsw_toolbox.f90 of the TEOS-10 fortran interface, that are used to |
119 |
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convert from conservative to potential temperature. For now they are not |
120 |
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called anywhere. |
121 |
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o pkg/ggl90: make "useIDEMIX" useful |
122 |
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- re-organize code in s/r ggl90_calc a little to move computations that |
123 |
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are different for idemix into separate loops (changes verification |
124 |
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experiment idemix at truncation level, 12 digits remain -> updated) |
125 |
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- requires 2 new 2D fields KappaM, verticalShear |
126 |
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- make hFacI and recip_hFacI local 3D variables that are passed to |
127 |
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s/r ggl90_idemix |
128 |
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- fix and improve some comments |
129 |
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|
130 |
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checkpoint65j (2015/02/25) |
131 |
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o pkg/openad |
132 |
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- synchronize seawater.F with version in model/src: replace routine |
133 |
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body of sw_temp by calling sw_ptmp and fix/add a few comments. |
134 |
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o pkg/mnc: |
135 |
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- change default value of pickup_read/write_mnc params to FALSE |
136 |
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(since few features are missing in reading MNC pickup files). |
137 |
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o model/src: |
138 |
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- change default (background) vertical diffusivity for salt to be the |
139 |
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temperature (background) vertical diffusivity. |
140 |
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- change background vertical diffusivity in vertical mixing pkgs ggl90, |
141 |
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kl10, my82 and pp81 from temperature diffusivity to salinity diffusivity. |
142 |
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This makes ptracers default diffusivity (that uses salt diffKr) more |
143 |
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consistent with vertical mixing schemes. |
144 |
|
o verification/testreport: |
145 |
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- fix typo in "-pcls" option ; |
146 |
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- put temp files in /tmp (instead of in local dir) |
147 |
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- add option "-ncad" to use genmake2 new option "-nocat4ad" |
148 |
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- allow to use "-j" option (for multi-procs make) for AD, OAD and TLM. |
149 |
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o pkg/ggl90 (idemix code): |
150 |
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- apply few fixes ; add some missing "_d 0" ; update output of exp. |
151 |
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global_ocean.90x40x15.idemix |
152 |
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o OpenAD |
153 |
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- enable active file I/O and begin removal of work-around code |
154 |
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for OpenAD for handling control variables (memory vs. active files) |
155 |
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- new CPP options file OPENAD_OPTIONS.h |
156 |
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- revert to genarr2d gradient check for hs94.1x64x5 |
157 |
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- (genarr3d tested by tutorial_global_oce_biogeo, tutorial_tracer_adjsens) |
158 |
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- gentim2d works for halfpipe_streamice but not yet hs94.1x64x5 |
159 |
|
o tools/genmake2: |
160 |
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- add option for an alternative Makefile (from Martin) where multiple |
161 |
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source files are sent to TAF (instead of all in one file). |
162 |
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o pkg/ggl90: add IDEMIX (Olbers and Eden, 2013) |
163 |
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- code provided by Carsten Eden as an extension of ggl90 |
164 |
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- so far the code is turned on within ggl90 by setting a CPP-flag at |
165 |
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compile time; a runtime flag implementation is not yet complete |
166 |
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- tested in new verification experiment global_ocean.90x40x15.idemix |
167 |
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o verification: |
168 |
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- reduce length of the AD test run by half for experiments |
169 |
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global_ocean.cs32x15 (std + thsice) and isomip |
170 |
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- enable active file I/O for OpenAD, adjust verifications accordingly |
171 |
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- halfpipe_streamice: change gradient check from genarr2d to gentim2d |
172 |
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o verification/testreport: |
173 |
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- fix two non-POSIX sed statements so that there are no error messages |
174 |
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on Mac OS X |
175 |
|
- replace hostname -s with hostname | sed 's/\..*$//' |
176 |
|
o model/src/seawater.F: |
177 |
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- simplify SW_TEMP to just calling SW_PTMP with P and PR exchanged |
178 |
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(following the matlab code), which would have avoided the bug caught |
179 |
|
by Matt (see below) in the first place |
180 |
|
o pkg/shelfice: |
181 |
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- implement alternative discretisation of quadratic drag (selectBotDragQuadr) |
182 |
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and true distance in no-slip BC (bottomVisc_pCell) similar to bottom-drag. |
183 |
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- fix sign of friction tendency (no-slip BC) and fix u,v drag for thin |
184 |
|
ice-shelf case (i.e., within surface level). |
185 |
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- add config summary in shelfice_check.F |
186 |
|
- remove global variable recip_SHELFICElatentHeat and replace by a local |
187 |
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variable recip_latentHeat |
188 |
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- introduce diagnostics for friction velocity uStar (in case of |
189 |
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SHELFICEuseGammaFrict) |
190 |
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- change verification experiment isomip.htd: |
191 |
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+ start from pickup (as input_ad at nIter0=8640) |
192 |
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+ start from SHELFICEmassFile instead of SHELFICEloadAnomaly file |
193 |
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+ test SHELFICEuseGammaFrict = .TRUE. |
194 |
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+ test SHELFICEadvDiffHeatFlux = .TRUE. |
195 |
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o model/src: |
196 |
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- fix bug (Thanks to Matt) in function SW_TEMP (to convert Pot.Temp to |
197 |
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in-situ Temp) and in routine SW_TEMP (in pkg/openad); |
198 |
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update output of experiments global_with_exf.yearly and isomip (all 6). |
199 |
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o pkg/shelfice: |
200 |
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- change setting of kTopC to also be zero where there is no ice-shelf. |
201 |
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- zero out surface forcing arrays (for now, for T & S + EmPmR) where |
202 |
|
ice-shelf is. |
203 |
|
- first attempt to get RealFreshWaterFlux effects: for now, only without |
204 |
|
SHELFICEboundaryLayer ; not consistent if using synchronous time-stepping. |
205 |
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o pkg/seaice: add the option to prescribe a fixed thickness PDF |
206 |
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for thermodynamic calculations |
207 |
|
- because of divisions of the type 7/7 not exactly equal to 1, this change |
208 |
|
affects results of some verification experiments by up to 4 digits: |
209 |
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global_ocean.cs32x15.seaice, lab_sea, lab_sea.fd, lab_sea.salt_plume, |
210 |
|
seaice_obcs, seaice_obcs.seaiceSponge, seaice_obcs.tides |
211 |
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adjoint: lab_sea, lab_sea.noseaicedyn |
212 |
|
-> updated |
213 |
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|
214 |
|
checkpoint65i (2015/01/23) |
215 |
|
o model/src: |
216 |
|
- change units of frictionHeating field from W to W/m^2 |
217 |
|
- fix bug in frictional heating from stratospheric drag in |
218 |
|
S/R ATM_PHYS_TENDENCY_APPLY_V |
219 |
|
- with synchronous time-stepping: move resetting to zero of frictionHeating |
220 |
|
field from load_fields_driver.F to thermodynamics.F ; |
221 |
|
- add diagnostics for frictional heating. |
222 |
|
o model/src & gmredi K3D: |
223 |
|
- add frictionHeating field to pickup-files (for synchronous time-stepping) |
224 |
|
- move ALLOW_EDDYPSI block out of DYNVARS.h and merge it into FFIELDS.h |
225 |
|
- rename uMean,vMean --> uEulerMean,vEulerMean (+ change diagnostics name |
226 |
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and name in pickup file). |
227 |
|
- fix arguments of few DIAGNOSTICS_FILL calls in gmredi_k3d.F |
228 |
|
o model/src: |
229 |
|
- move (from ini_forcing.F) initialisation of all arrays in header file |
230 |
|
FFIELDS.h into new S/R ini_ffields.F ; this fix broken restart |
231 |
|
(since Nov 2012) with option selectAddFluid=1. |
232 |
|
o pkg/shelfice: |
233 |
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- change units (+ document) of newly added field "shelfIceMassDynTendency" |
234 |
|
- upgrade from _RS to _RL shelficeMass & shelficeLoadAnomaly arrays. |
235 |
|
o pkg/obcs: re-organize obcs_calc_stevens.F to prepare for passive tracers |
236 |
|
o pkg/seaice: two new runtime parameters: |
237 |
|
- SEAICE_cStar replaces the hard wired "20" in the strength formulation, |
238 |
|
long overdue |
239 |
|
- SEAICE_tensilFac: preparation for Koenig-Beatty+Holland (2012) |
240 |
|
parameterization of tensil stress for fast ice (does not do anything yet) |
241 |
|
o pkg/seaice/seaice_check.F: left over from restricted addtive Schwarz method |
242 |
|
for LSR: move checking overlaps out of JFNK-if-block |
243 |
|
o pkg/atm_phys: |
244 |
|
- move copy of grid and dynamical fields out of atm_phys_driver.F into |
245 |
|
new S/R ATM_PHYS_DYN2PHYS. |
246 |
|
- fix level height for Linear Free-Surf case (to be consistent with |
247 |
|
fixed-in-time pressure levels). |
248 |
|
o pkg/mom_common (bottomdrag): |
249 |
|
- average bottomDragFld (ALLOW_BOTTOMDRAG_CONTROL) from grid-cell center |
250 |
|
to correct location (U & V point) in S/R MOM_U/V_BOTTOMDRAG; |
251 |
|
update output (adm & tlm) of experiment global_ocean.90x40x15.bottomdrag. |
252 |
|
o pkg/shelfice (u/v_drag): |
253 |
|
- add one argument (the other velocity component) to S/R SHELFICE_U/V_DRAG; |
254 |
|
- use SHELFICEDragLinear & SHELFICEDragQuadratic in shelfice_v_drag.F |
255 |
|
(now similar to shelfice_u_drag.F) |
256 |
|
- remove condition on bottomDragTerms when calling SHELFICE_U/V_DRAG |
257 |
|
from mom_vecinv.F (similar to mom_fluxform calls). |
258 |
|
o pkg/mom_common (bottomdrag): |
259 |
|
- add one argument (the other velocity component) to S/R MOM_U/V_BOTTOMDRAG; |
260 |
|
- add options for alternative discretisation of velocity norm in quadratic |
261 |
|
bottom drag: averaging of grid-cell-center KE to U.point and V.point |
262 |
|
(selectBotDragQuadr=0, original code) can produce noisy patterns; this |
263 |
|
improves when averaging only the other component (e.g. vVel for U bottom |
264 |
|
drag) using wet-point method (selectBotDragQuadr=2) or not (=1). |
265 |
|
- add options (bottomVisc_pCell) to account for partial-cell in bottom |
266 |
|
friction (no-slip BC) thus getting the true distance from the bottom; |
267 |
|
off by default since this also reduces model stability (explicit bottom |
268 |
|
friction). Changes produce different machine truncation with linear-drag |
269 |
|
+ no-slip BC: update output of experiments exp4.stevens (10 digits) and |
270 |
|
front_relax (bvp & mxl, 10 & 11 digits). |
271 |
|
o model/src & mom pkgs: |
272 |
|
- add one more level to vertical viscosity local arrays (Nr+1, previously Nr) |
273 |
|
since no-slip bottom BC uses viscosity @ k+1 to update velocity @ level k |
274 |
|
- for now and until vertical mixing scheme are updated to fill up level Nr+1, |
275 |
|
just copy level Nr value to level Nr+1. |
276 |
|
o doc: |
277 |
|
- add notes form Abhisek Chakraborty on how to close Heat & Salt budgets. |
278 |
|
o pkg/streamice: |
279 |
|
- shelfice_init_varia.F, shelfice_init_fixed.F, shelfice_readparms.F, |
280 |
|
SHELFICE.h: move array shelficemass to init_varia, initialise |
281 |
|
from array shelficemassinit, which is set in init_fixed and |
282 |
|
has option to be set from file; introduce array |
283 |
|
shelficeMassDynTend array, set thru file in init_fixed |
284 |
|
- NEW FILE: shelfice_step_icemass.F: update shelficemass from either |
285 |
|
shelfIceFreshWaterFlux and shelficeMassDynTend or H_streamice in |
286 |
|
pkg/streamice |
287 |
|
- shelfice_thermodynamics.F: call shelfice_step_icemass if |
288 |
|
SHELFICEMassStepping = .true. |
289 |
|
- shelfice_ad_diff.list: add new subroutine shelfice_step_icemass.f |
290 |
|
|
291 |
|
checkpoint65h (2014/12/17) |
292 |
|
o verification/global_ocean.90x40x15, global_ocean_ebm: |
293 |
|
- update to generic controls. |
294 |
|
o pkg/ctrl: |
295 |
|
- ctrl_map_ini_genarr.F: test for igen>0 |
296 |
|
- ctrl_init_variables.F: add call to CTRL_MAP_INI_GENTIM2D. |
297 |
|
- move gentim2d part of ctrl_map_ini_genarr.F to |
298 |
|
new separate routine : ctrl_map_ini_gentim2d.F |
299 |
|
- ctrl_cost_driver.F,ctrl_init.F ctrl_map_ini_genarr.F: |
300 |
|
add time variable weights and cyclic controls (time mean, |
301 |
|
seasonal cycle, etc) capabilities to gentim2d |
302 |
|
o pkg/ecco: |
303 |
|
- move reading of error, conversion to weights from |
304 |
|
ecco_cost_init_fixed.F to ecco_toolbox.F (ecco_readwei) |
305 |
|
o global_oce_llc90, cs32: |
306 |
|
- activte sbo. |
307 |
|
- CTRL_SIZE.h : add maxCtrlProc. |
308 |
|
- activate the new genctrl capabilities. |
309 |
|
- update following reorganization of global_oce_input_fields.tar.gz |
310 |
|
o pkg/ctrl/ctrl_ad_diff.list: |
311 |
|
- add missing ctrl_init_rec.f |
312 |
|
o tools/OAD_support/keepOriginal: |
313 |
|
- add ctrl_init_rec.F |
314 |
|
o model/src/the_main_loop.F, pkg/ctrl/ctrl_map_ini_genarr.F: |
315 |
|
- avoid recomputations of xx_gentim2d_dummy. |
316 |
|
o momentum diagnostics: |
317 |
|
- move filling of diagnostics Um_Diss & Vm_Diss from mom_fluxform.F and |
318 |
|
mom_vecinv.F to timestep.F (to include Smag-3D contribution). |
319 |
|
o pkg/seaice/seaice_lsr.F: |
320 |
|
- fix computation of BU/BV, make sure they are non-zero, only necessary |
321 |
|
for cubed sphere exchanges and SEAICE_OLx/y>0. |
322 |
|
This makes calling s/r fill_cs_corner_rl obsolete (removed). |
323 |
|
o verification/global_ocean.cs32x15/input.seaice |
324 |
|
- add test for strong implicit coupling and restricted addtive Schwarz |
325 |
|
methods for LSR |
326 |
|
- update results/output.seaice.txt |
327 |
|
o verification/tutorial_global_oce_biogeo: |
328 |
|
- AD & OAD set-up: switch off ALLOW_OLD_VIRTUALFLUX (like in fwd set-up) |
329 |
|
and set PTRACERS_EvPrRn(1,2) to zero (for DIC & ALK); |
330 |
|
update output_adm,_oadm,_tlm.txt |
331 |
|
o pkg/dic: |
332 |
|
- change default to "#undef ALLOW_OLD_VIRTUALFLUX" in DIC_OPTIONS.h |
333 |
|
- add a stop when ALLOW_OLD_VIRTUALFLUX is defined and PTRACERS_EvPrRn |
334 |
|
for tracer 1 & 2 is set (to avoid double counting of dilution effect). |
335 |
|
o verification/tutorial_global_oce_biogeo: |
336 |
|
- AD & OAD set-up: do not set PTRACERS_EvPrRn for tracer 1 & 2 since |
337 |
|
dilution is already added by pkg/dic ALLOW_OLD_VIRTUALFLUX ; |
338 |
|
update output_adm,_oadm,_tlm.txt |
339 |
|
o eesupp/src: |
340 |
|
- add fill_cs_corner_rl.F (_RL-copy of fill_cs_corner_rs.F) |
341 |
|
and call it in seaice_lsr when using nonzero SEAICE_OLx/y |
342 |
|
o pkg/seaice: introduce strongly implicit coupling, intended for stabilizing |
343 |
|
LSR (following Hutchings et al. 2004) |
344 |
|
- introduce zetaZ as a global variable (requires adjustments in |
345 |
|
seaice_evp.F and seaice_jfnk.F) and compute analoguously to etaZ |
346 |
|
in seaice_calc_viscosities.F |
347 |
|
- new flag SEAICEuseStrImpCpl (default off) |
348 |
|
- add new terms zetaZ*du/dy and zetaZ*dv/dx on both sides of the |
349 |
|
momentum equations |
350 |
|
- JFNK-solver (preconditioner) adjusted to allow using this method |
351 |
|
(where it does not have any positive effect) |
352 |
|
o pkg/seaice |
353 |
|
- add overlap for restrictive additive Schwartz method also to LSR, but |
354 |
|
turn it off by default (because it only seems to work for non-cubed |
355 |
|
sphere/llc topologies) |
356 |
|
o pkg/autodiff |
357 |
|
- add extra exchanges in addummy_in_steppging also for mnc output |
358 |
|
o pkg/seaice: |
359 |
|
- add extra exchanges before dumping adjoint fields in seaice_ad_dump.F |
360 |
|
to avoid stripes in the adjoint output (similar to addummy_in_stepping.F) |
361 |
|
o pkg/obcs: |
362 |
|
- add option to specify domain-connected piece Id along OB though files |
363 |
|
(for now, only used to diagnose PhiVel; default =1 -> global correction) |
364 |
|
- modify obcs_diag_balance.F to process each connected-part separately; |
365 |
|
exclude OB where Id = 0 but keep the full divergence there (-> constant |
366 |
|
Psi along this portion of OB and all inflow derived from grad(Phi)) |
367 |
|
- add example of OB-conect files in verification/so_box_biogeo/input. |
368 |
|
o pkg/diagnostics: |
369 |
|
- improve treatment of Open-Boundaries in Velocity-Potential calculation: |
370 |
|
a) use non zero matrix element across OB and solve for Phi 1 grid point |
371 |
|
outside OB (i.e, where tracer OBCS are applied). |
372 |
|
b) global imbalance of inFlow/outFlow across OB: instead of modifying |
373 |
|
velocity across OB, spread it uniformly along the OB in the RHS. |
374 |
|
|
375 |
|
checkpoint65g (2014/11/19) |
376 |
|
o pkg/diagnostcis: |
377 |
|
- add preconditioner off-diagonal factor (diagCG_pcOffDFac) as run-time param |
378 |
|
o pkg/my82,pp81,kl10: |
379 |
|
- fix ALLOW_3D_DIFFKR implementation (previously had no effect): use 3-D |
380 |
|
field diffKr as background diffusivity to set minimum diffusivity value. |
381 |
|
o pkg/seaice: |
382 |
|
- add new parameter SEAICEuseEVPrev (for revisited EVP by |
383 |
|
Bouillon et al 2013) |
384 |
|
- add SEAICE_evpAlpha/Beta to namelist |
385 |
|
- modify seaice_evp code to able to use SEAICEuseEVPrev. These changes |
386 |
|
involve trivial re-ordering of divisions/multiplications that should not |
387 |
|
have any effects, but ... they do change the results of lab_sea.hb87 so |
388 |
|
that only 2 digits of agreement remain, in line with the general |
389 |
|
instability/fragility of the evp-code. For now, I do not care and just |
390 |
|
update the verification experiment |
391 |
|
o pkg/ctrl : add generic pre-processing (xx_genarr2d_preproc etc) |
392 |
|
- remove xx_genarr2d_numsmooth etc |
393 |
|
- use xx_genarr2d_preproc etc instead |
394 |
|
- carry out smooth_correl2D at initialization stage rather than during |
395 |
|
time stepping. |
396 |
|
- get smoothOpNb from xx_gentim2d_preproc |
397 |
|
o global_oce_cs32 : |
398 |
|
- add test of generic ecco capabilities. |
399 |
|
o pkg/exf/exf_getsurfacefluxes.F : |
400 |
|
- add to tmpUE/tmpVN rather than re-initializing them (conventional behavior). |
401 |
|
o pkg/ctrl,ecco : |
402 |
|
- omit un-necessary arguments to ctrl_cost_gen.F unless ECCO_CTRL_DEPRECATED |
403 |
|
is defined. |
404 |
|
o pkg/seaice: add diagnostics for Delta (deformation parameter) |
405 |
|
o model/src: |
406 |
|
- when ALLOW_3D_DIFFKR is defined, add a Warning if any of the vertical |
407 |
|
diffusivity (background) is specified but ignored. |
408 |
|
o verification: |
409 |
|
- in testreport, convert hostname to lower case for default output dir name |
410 |
|
o model, pkg : add useCTRL, useECCO parameters (on/off run time switch). |
411 |
|
o pkg/dic: add modifications from Hajoon: |
412 |
|
- add iron sedimentation flux function of the flux of PO4 out of bottom layer |
413 |
|
- light attenuation: add self-shading effect by climatological Chlorophyll |
414 |
|
(read from file). |
415 |
|
o pkg/seaice/seaice_preconditioner.F : fix cpp flags, so that code also |
416 |
|
compiles when SEAICE_ALLOW_DYNAMICS is undefined |
417 |
|
o global_oce_llc90,cs32 : ecco_v4 verification exps now use separate |
418 |
|
AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h, ECCO_OPTIONS.h rather than |
419 |
|
ECCO_CPPOPTIONS.h (i.e. replacing the deprecated, circumvoluted, |
420 |
|
approach where CPP_OPTIONS.h includes an omnipotent |
421 |
|
ECCO_CPPOPTIONS.h that superseeds pkgs '_OPTIONS.h'). |
422 |
|
o pkg/ctrl/ctrl_map_ini_genarr.F : include GMREDI_OPTIONS.h where |
423 |
|
ALLOW_3D_KAPGM, ALLOW_3D_KAPREDI (to be added later) belong. |
424 |
|
o pkg/seaice/SEAICE_SIZE.h : replace ALLOW_AUTODIFF_TAMC with ALLOW_AUTODIFF |
425 |
|
to avoid needing AUTODIFF_OPTIONS.h anytime SEAICE_SIZE.h is included |
426 |
|
(it seems that THSICE_SIZE.h, PTRACERS_SIZE.h have the same issue...) |
427 |
|
o model/src, pkg/smooth, profiles, salt_plume, seaice, exf, ecco, ctrl : |
428 |
|
add ECCO_OPTIONS.h, AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h when needed |
429 |
|
- ECCO_OPTIONS.h is needed when including ecco_cost.h, ecco.h |
430 |
|
- AUTODIFF_OPTIONS.h is needed when including tamc.h, tamc_keys.h |
431 |
|
- CTRL_OPTIONS.h is needed when including ctrl.h, optim.h, etc |
432 |
|
o pkg/ctrl,ecco,exf : |
433 |
|
- remove variables associated with NON-generic costs, |
434 |
|
unless ECCO_CTRL_DEPRECATED is defined. |
435 |
|
- remove NON-generic NON-obcs controls, |
436 |
|
unless ECCO_CTRL_DEPRECATED is defined. |
437 |
|
o pkg/ctrl : added ctrl_local_params.h |
438 |
|
o pkg/ecco : added ecco_local_params.h |
439 |
|
o verification : added ECCO_CTRL_DEPRECATED to most as and oad |
440 |
|
experiments, which will progressively be removed once the |
441 |
|
experiments are revised to use only generic controls/costs. |
442 |
|
|
443 |
|
checkpoint65f (2014/10/13) |
444 |
|
o pkg/ctrl, ecco, seaice : minor changes in headers |
445 |
|
o global_oce_llc90,cs32 : ecco_v4 verification exps now test generic |
446 |
|
cost function and control capabilities added since checkpoint65c. |
447 |
|
o pkg/ctrl: regroup all obcs ctrl variables in CTRL_OBCS.h. |
448 |
|
o pkg/ecco: increase modularity and improve logic |
449 |
|
- ecco_toolbox.F (new) : basic operations that are often used, |
450 |
|
including ecco_zero, ecco_cp, ecco_cprsrl, ecco_diffmsk, |
451 |
|
ecco_addcost, ecco_add, ecco_div, ecco_readbar. |
452 |
|
- cost_gencal.F (new) : determine filnames and records. |
453 |
|
- cost_genread.F, cost_generic.F : condense code using ecco_toolbox. |
454 |
|
- cost_generic.F : use spzeroloc rather than hard-coded -9999, |
455 |
|
and exploit the above functions leading to more compact code. |
456 |
|
- cost_genread.F : rm un-necessary arguments, re-arrange args order. |
457 |
|
- ecco_check.F, ecco_readparms.F : bring logic up to date (using_tpj, |
458 |
|
using_ers, using_gfo, using_mdt is now only defined within gencost) |
459 |
|
o pkg/ecco: extend generic cost capabilities |
460 |
|
- pkg/ecco : added 3D gencost (ALLOW_GENCOST3D), added gencost |
461 |
|
capabilities via gencost_preproc (+ _c,_i,_r related params), |
462 |
|
gencost_posproc (+ _c,_i,_r related params), gencost_nrecperiod, |
463 |
|
gencost_outputlevel arguments to cost_generic |
464 |
|
- pkg/ecco/cost_genread.F (new) : interface between cost_generic |
465 |
|
and active_read, making room for gencost_preproc to take effect. |
466 |
|
Added preproc code ('climmon') to replace GENERIC_BAR_MONTH. |
467 |
|
- pkg/ecco/cost_generic.F : |
468 |
|
compute and store misfit maks*(model-data) in localdif that is |
469 |
|
then used in cost and for output, output misfit if outlev.GT.0 |
470 |
|
- pkg/ecco/cost_averagesfields.F : depend on gencost_barskip |
471 |
|
rather gencost_barfile for deciding whether to write barfile |
472 |
|
- pkg/ecco/ecco_cost_driver.F : extract call to cost_profiles from cost_hyd |
473 |
|
- pkg/ecco/ecco_cost_init_fixed.F : extract gencost weights from |
474 |
|
ecco_cost_weights, re-activate ecco_summary, determine gencost_barskip |
475 |
|
- pkg/ecco/ecco_summary.F : report gencost variables |
476 |
|
- pkg/ecco/cost_gencost_customize.F : treat case of scatterometer costs |
477 |
|
o pkg/sea/SEAICE_OPTIONS.h : add ALLOW_COST_ICE, ALLOW_SEAICE_COST_SMR_AREA |
478 |
|
o pkg/ecco: internal re-organization |
479 |
|
- resolve un-necessary dependancies within pkg/ecco and to pkg/ctrl |
480 |
|
(rm includes of optim.h and ctrl.h, replace optimcycle with eccoiter, |
481 |
|
mv relevant variables definition from ecco_cost.h to ecco.h, |
482 |
|
make sure gencost routines only include ecco.h) |
483 |
|
- throughout : add missing CCP switches, rm unused variables, |
484 |
|
and rm un-necessary CPP switches |
485 |
|
- throughout gencost routines : replace modelstartdate with |
486 |
|
gencost_startdate when needed |
487 |
|
- cost_bp_read.F : use arguments, instead of common blocs |
488 |
|
so that it can be used also by (new) cost_gencost_bpv4.F |
489 |
|
- ecco_init_varia.F : initialize RHOsumGlob_0, VOLsumGlob_0 |
490 |
|
- ecco_phys.F : compute etanFull |
491 |
|
- ecco_readparms.F : rename using_topex as using_tpj, add |
492 |
|
bpv4-grace to gencost list, initialize added parameters |
493 |
|
- ecco_summary.F : include SIZE.h needed for augmented ecco.h |
494 |
|
|
495 |
|
checkpoint65e (2014/09/28) |
496 |
|
o pkg/obcs: |
497 |
|
- replaced the just-added CPP options with run-time variables |
498 |
|
(see pkg/obcs/OBCS_PARAMS.h for details) |
499 |
|
o pkg/obcs: |
500 |
|
- add additional CPP options for sponge boundary layers |
501 |
|
(see pkg/obcs/OBCS_OPTIONS.h for details) |
502 |
|
o pkg/atm_phys: |
503 |
|
- implement simple (obliquity only, assuming circular planet orbit) |
504 |
|
seasonal cycle for incoming insolation ; used when run-time parameter |
505 |
|
"select_incSW" is set to 1 ; by default (=0), uses old unchanged formula. |
506 |
|
o pkg/exf, pkg/ecco, pkg/ctrl: |
507 |
|
- add ctrlUseGen and .NOT.ctrlUseGen exclusive brackets |
508 |
|
- activate gentim2d for xx_atemp,xx_aqh,xx_swdown,xx_lwdown,xx_precip |
509 |
|
- implement gentim2d for xx_tauu, xx_tauv |
510 |
|
o pkg/ctrl, pkg/ecco : |
511 |
|
- fix and complement the generic controls implementation |
512 |
|
o pkg/exf/exf_getclim.F, exf_getffields.F, exf_getsurfacefluxes.F, |
513 |
|
pkg/shelfice/shelfice_thermodynamics.F, |
514 |
|
verification/hs94.1x64x5/code_ad/ctrl_map_gentim2d.F, |
515 |
|
verification/hs94.1x64x5/code_oad/ctrl_map_gentim2d.F : |
516 |
|
- add weight in CTRL_GET_GEN calls |
517 |
|
o pkg/ctrl : |
518 |
|
- ctrl_get_gen.F : add weight as input parameter, and apply |
519 |
|
it directly rather than using smooth_correl2Dw (to be retired). |
520 |
|
- ctrl_map_gentim2d.F : add wgentim2d in CTRL_GET_GEN call |
521 |
|
o pkg/ctrl : |
522 |
|
- introduce run time switch ctrlUseGen (in ctrl.h, ctrl_check.F, |
523 |
|
ctrl_init_variables.F, ctrl_readparms.F, ctrl_summary.F) |
524 |
|
- re-activate ctrl_summary (call in ctrl_init.F) |
525 |
|
o pkg/ctrl/ctrl_cost_gen.F : |
526 |
|
- fix CCP brackets, remove un-necessary myiter, mytime |
527 |
|
o pkg/ecco, pkg/ctrl : |
528 |
|
- remove cost_genctrl.F (now pkg/ctrl/ctrl_cost_driver.F) |
529 |
|
- remove cost_forcing_gen.F (now pkg/ctrl/ctrl_cost_gen2d.F) |
530 |
|
- add ctrl_cost_driver.F (replaces pkg/ecco/cost_genctrl.F) |
531 |
|
- add ctrl_cost_gen2d.F (replaces pkg/ecco/cost_forcing_gen.F) |
532 |
|
|
533 |
|
checkpoint65d (2014/09/15) |
534 |
|
o pkg/ctrl/CTRL_GENARR.h, ctrl_readparms.F : |
535 |
|
- add xx_genarr2d_bounds,xx_genarr3d_bounds, |
536 |
|
xx_genarr2d_numsmooth, xx_genarr3d_numsmooth |
537 |
|
o pkg/ctrl/ctrl_map_ini_genarr.F : |
538 |
|
- remove compilation failure |
539 |
|
- replace hard coded example |
540 |
|
- use ctrl_map_ini_gen2D, 3D |
541 |
|
o pkg/ctrl/ctrl_pack.F, ctrl_unpack.F : |
542 |
|
- on/off switch based upon xx_genarr2d_weight,3d |
543 |
|
o src/packages_init_variables.F : |
544 |
|
- regroup pkg/estimation calls |
545 |
|
- remove CTRL_MAP_INI, CTRL_MAP_INI_ECCO |
546 |
|
(moved to ctrl_init_variables) |
547 |
|
o cost/cost_init_varia.F : |
548 |
|
- remove ecco_cost_init_varia |
549 |
|
(moved to ecco_init_varia) |
550 |
|
o ctrl/ctrl_init_variables.F : |
551 |
|
- add CTRL_MAP_INI, CTRL_MAP_INI_ECCO |
552 |
|
- add CTRL_MAP_INI_GENARR, SEAICE_CTRL_MAP_INI |
553 |
|
o ctrl/ctrl_map_ini.F : |
554 |
|
- remove ctrl_map_ini_genarr, seaice_ctrl_map_ini |
555 |
|
(moved to ctrl_init_variables) |
556 |
|
o ctrl/ctrl_map_ini_ecco.F : |
557 |
|
- remove ECCO_PHYS (mv to ecco_init_varia) |
558 |
|
- remove seaice_ctrl_map_ini (mv to ctrl_init_variables) |
559 |
|
o ecco/ecco_ad_diff.list : |
560 |
|
- add ecco_init_varia.f |
561 |
|
o ecco/ecco_init_varia.F |
562 |
|
- new routine |
563 |
|
o pkg/streamice: |
564 |
|
- move call to STREAMICE_INITIALIZE_PETSC from the_model_main.F |
565 |
|
to streamice_init_fixed.F ; fix setting of STREAMICEisOn. |
566 |
|
- from model/src, only call pkg/streamice routines if useStreamIce is TRUE. |
567 |
|
o pkg/generic_advdiff: |
568 |
|
- fix bug causing negatives in GAD_SMOLARKIEWICZ_HACK, introduced 8/8/2014. |
569 |
|
o pkg/exf: |
570 |
|
- exf_getffields.F : add xxg_atemp, xxg_aqh, xxg_swdown, xxg_lwdown, |
571 |
|
xxg_precip capability |
572 |
|
- exf_wind.F : no need for ALLOW_WSPEED_CONTROL cpp switch |
573 |
|
o pkg/ctrl: |
574 |
|
- ctrl_pack.F, ctrl_unpack.F : omit (un)packing of undefined xx_gentim2d |
575 |
|
o model/src/load_fields_driver.F : |
576 |
|
- move call to CTRL_MAP_GENTIM2D ahead of BULKF_FIELDS_LOAD, EXF_GETFORCING |
577 |
|
so xx_gentim2d can be applied to e.g. exf fields in a timely manner. |
578 |
|
o OpenAD verification experiments: |
579 |
|
- Include explicitly AUTODIFF_OPTIONS.h, COST_OPTIONS.h, and CTRL_OPTIONS.h |
580 |
|
in src files (to enable to skip the ECCO_CPPOPTIONS.h); |
581 |
|
for now, only in pkgs used in OpenAD verification experiments. |
582 |
|
- Change all except one (halfpipe_streamice) OpenAD experiments to use pkg |
583 |
|
specific option file (AUTODIFF_OPTIONS.h, COST_OPTIONS.h & CTRL_OPTIONS.h) |
584 |
|
instead of using ECCO_CPPOPTIONS.h (with all relevant options in it). |
585 |
|
This applies to both TAF (*/code_ad/) and OpenAD (*/code_oad/) tests. |
586 |
|
o OpenAD verification tests: |
587 |
|
- finish removing ALLOW_AUTODIFF_OPENAD (replaced by ALLOW_OPENAD); |
588 |
|
- finish replacing ALLOW_AUTODIFF_TAMC by ALLOW_AUTODIFF (except for |
589 |
|
tape/storage which are specific to TAF/TAMC) in pkgs used in OpenAD exp. |
590 |
|
- leave ALLOW_AUTODIFF_TAMC undef in OpenAD verification tests (*/code_oad/) |
591 |
|
and remove local copy of "tamc.h" (needed only if ALLOW_AUTODIFF_TAMC). |
592 |
|
o model/src & generic_advdiff: |
593 |
|
- change hard-coded loop-range in S/R APPLY_FORCING_T/S to set T & S |
594 |
|
forcing over 0:sNx+1, 0:sNy=1 (instead of just 1:sNx,1:sNy): Model |
595 |
|
dynamics requires valid tracer forcing only over tile interior but, for |
596 |
|
some diagnostics, may need to extend it over 1 point in tile halo region. |
597 |
|
- in gad_calc_rhs.F, update calls to gmredi_x/ytransport to get valid |
598 |
|
tendency over i,j_Min,Max range. This allows to simplfy i,j_Min,Max |
599 |
|
setting in temp/salt/ptracer_integrate.F |
600 |
|
o pkg/dic: |
601 |
|
- multiply tracer tendencies by maskInC (if ussing OBCS) before updating |
602 |
|
gchem tracers: this allows to skip the 2nd call to OBCS_APPLY_PTRACER |
603 |
|
in gchem_forcing_sep.F |
604 |
|
o pkg/autodiff & obcs: |
605 |
|
- add storage of current OB values for U & V (was already done for T & S). |
606 |
|
|
607 |
|
checkpoint65c (2014/08/30) |
608 |
|
o pkg/dic: |
609 |
|
- take out of dic_atmos.F the initialisation part (corresponding to istate=0) |
610 |
|
and move it to new S/R DIC_INI_ATMOS ; also simplify the dependencies for |
611 |
|
AD compilers (but still a Pb with multi-threading and Ajoint dependencies). |
612 |
|
o verification: |
613 |
|
- new experiment testing OBCS and DIC pkgs, using params & output from |
614 |
|
tutorial_global_oce_biogeo but limited to a sub-domain around Drake |
615 |
|
passage: take OBCS from the last year of a 2 yrs simulation and initial |
616 |
|
conditions from t=1.yr while keeping the same forcing. |
617 |
|
o model/src: |
618 |
|
- when allowFreezing=T, only reset below freezing initial Temp to Tfreezing |
619 |
|
(at any k) if checkIniTemp is not set to FALSE (default checkIniTemp=T). |
620 |
|
o pkg/diagnostics (Stats-Diags): |
621 |
|
- re-write S/R DIAGSTATS_CALC (more similar to TARGET_NEC_SX part) to: |
622 |
|
a) refine region where stats are computed, excluding where arrhFac=0 ; |
623 |
|
b) fix missing interior mask (use with OBCS) in 3-D fields statistics; |
624 |
|
c) extend regional stats over the region edges (for U or V pt location). |
625 |
|
o pkg/gchem: |
626 |
|
- add a (2nd) call to OBCS_APPLY_PTRACER in gchem_forcing_sep.F (needed since |
627 |
|
pkg/dic is currently changing/updating ptracers values beyond the OB). |
628 |
|
o verification (hs94): |
629 |
|
- convert Held & Suarez external_forcing.F (from hs94.cs, with Sigma-coords |
630 |
|
bits) to apply_forcing.F and undef USE_OLD_EXTERNAL_FORCING in experiments |
631 |
|
hs94.cs-32x32x5 and tutorial_held_suarez_cs ; also use the same version of |
632 |
|
apply_forcing.F in 2D hs94 (fwd, ad & oad) but keep LatLon hs94 unchanged. |
633 |
|
o pkg/ptracers: |
634 |
|
- implement Adams-Bashforth on pTracers (instead of on tracer tendency), |
635 |
|
switched on by setting PTRACERS_doAB_onGpTr=F (default set to doAB_onGtGs) |
636 |
|
- change exp4 secondary test (input.nlfs) to test AB on T & S & pTracer |
637 |
|
with AB-2 code (so that it get tested). |
638 |
|
o model/src: |
639 |
|
- allow to apply Adams-Bashforth on Temp & Salt (instead of on gT,gS) |
640 |
|
with AB-2 code (previously only available with AB-3 code). |
641 |
|
Also move the code (call to ADAMS_BASHFORTH S/R) form thermodynamics.F |
642 |
|
to temp/salt_integrate.F (since the 2nd part of gt/sNm1 update is done |
643 |
|
there, by calling CYCLE_AB_TRACER). |
644 |
|
o pkg/generic_advdiff: |
645 |
|
- change Tracer argument (drop bi,bj indices) in S/R GAD_CALC_RHS, |
646 |
|
GAD_C2_ADV_R, GAD_U3_ADV_R, GAD_C4_ADV_R, GAD_DIFF_R, GAD_BIHARM_R |
647 |
|
+ also in GMREDI_X/Y/RTRANSPORT ; and update corresponding calls in |
648 |
|
S/R temp/salt/ptracers_integrate.F |
649 |
|
o model/src & pkg/ptracers: |
650 |
|
- remove common block variables gT,gS (in DYNVARS.h), except when |
651 |
|
USE_OLD_EXTERNAL_FORCING is defined; update TAF storage accordingly. |
652 |
|
- remove common block variable gPtr. |
653 |
|
o model/src & pkgs: |
654 |
|
- change gTracer (and/or tracer) argument (drop bi,bj indices) in S/R |
655 |
|
ADAMS_BASHFORTH(2&3), CYCLE_(AB_)TRACER, FREESURF_RESCALE_G, |
656 |
|
IMPLDIFF, SOLVE_TRIDIAGONAL & _PENTADIAGONAL, GAD_SOM_ADVECT, |
657 |
|
GAD_ADVECTION, GAD_CALC_RHS, GAD_IMPLICIT_R, TIMEAVE_CUMUL_DIF_1T |
658 |
|
+ change accordingly all calling S/R. |
659 |
|
- use local temperature/salinity/ptracer tendency array (without bi,bj) |
660 |
|
in S/R temp/salt/ptracers_integrate.F |
661 |
|
o pkg/seaice: |
662 |
|
- move computation of stress contributions to rhsU/V in s/r seaice_lsr |
663 |
|
to separate s/r seaice_lsr_rhsu/v in order to be able to re-use code |
664 |
|
- make u/vIceC local variables if SEAICE_CGRID is defined only to be used |
665 |
|
in seaice_lsr |
666 |
|
- seaice_lsr.F: make local 4D arrays UXX, VYY, etc 2D |
667 |
|
in s/r seaice_lsr_calc_coeffs |
668 |
|
o pkg/mdsio: |
669 |
|
- in MDS_READ/WRITE_FIELD, stop if file-name (+prefix) is too long |
670 |
|
(e.g., > MAX_LEN_MBUF -90 ) or, in INI_MODEL_IO, if mdsioLocalDir is |
671 |
|
too long (e.g., > MAX_LEN_FNAM/2 ) |
672 |
|
|
673 |
|
checkpoint65b (2014/08/12) |
674 |
|
o pkg/matrix: |
675 |
|
- pass, as argument, updated tracer field to S/R MATRIX_STORE_TENDENCY_EXP |
676 |
|
o model/src: |
677 |
|
- fix initialisation of geothermalFile; compile geothermal-flux code in |
678 |
|
natl_box verification experiment. |
679 |
|
o model/src & pkg/down_slope: |
680 |
|
- push the k loop inside S/R TIMESTEP_TRACER (now called outside the k loop). |
681 |
|
- in dwnslp_apply.F, update tracer tendency instead of the future tracer |
682 |
|
field and call S/R DWNSLP_APPLY before TIMESTEP_TRACER; this affects |
683 |
|
results at machine truncation level: update output of experiments |
684 |
|
global_ocean.90x40x15.dwnslp (FWD) and lab_sea.noseaicedyn (AD). |
685 |
|
o pkg/diagnostics (Stats-Diags): |
686 |
|
- do not cumulate the full volume when DIAGNOSTICS_FILL is |
687 |
|
called with bibjFlg < 0 (no increment of the counter for 2D/3D diag); |
688 |
|
This fix the mean statistics when DIAGNOSTICS_FILL is called multiple |
689 |
|
times (but Min,Max and StD are still wrong). |
690 |
|
o model/src: |
691 |
|
- add geothermal flux forcing: read in ini_forcing.F as time-constant |
692 |
|
field "geothermalFlux" applied in S/R APPLY_FORCING_T (apply_forcing.F) |
693 |
|
o model/src: |
694 |
|
- move CYCLE_TRACER calls from tracers_correction_step.F to temp/salt/ptracer |
695 |
|
_integrate.F so that, when leaving S/R THERMODYANMICS, theta,salt and pTrac |
696 |
|
arrays are already updated while adjustments (filters, conv.adjustment) are |
697 |
|
still applied later, in S/R TRACERS_CORRECTION_STEP. |
698 |
|
o model/src: |
699 |
|
- store in common bloc array "rhoInSitu" the virtual potential temperature |
700 |
|
anomaly that is used to compute geopotential: this make the atmos code |
701 |
|
more similar to ocean code which already uses rhoInSitu in calc_phi_hyd.F |
702 |
|
o pkg/seaice/seaice_lsr.F |
703 |
|
- rename integer variable ilcall to ipass (that's what it is called |
704 |
|
in the residual diagnostics |
705 |
|
- change time stepping for NPSEUDOTIMESTEP > 2 (does not change the |
706 |
|
default) for improved non-linear convergence of the first few steps |
707 |
|
- adjust a few comments and add new ones to explain some of the store |
708 |
|
directives |
709 |
|
o pkg/generic_advdiff (& ptracers): |
710 |
|
- re-work the code to check for valid advection scheme and for minimum |
711 |
|
size of overlap (now stored in local common bloc in gad_advscheme.F) |
712 |
|
o pkg/seaice: another attempt to make the adjoint work for sea ice dynamics |
713 |
|
- re-initialize more variables in seaice_lsr: u/vIceC, u/vIceNm1 |
714 |
|
- add an auxilliary variable "bet" and fix store directives and keys in |
715 |
|
seaice_lsr_tridiagu/v, this seems to do the trick (i.e. more or |
716 |
|
less exact gradients in my tests); but there are still |
717 |
|
recomputation warning (although gradients are sort of OK), when |
718 |
|
SEAICE_LSR_VECTORIZE is not defined, so this flag and |
719 |
|
SEAICE_LSR_VECTORIZE_ZEBRA are recommended for efficiency. |
720 |
|
- update verification experiments lab_sea. |
721 |
|
- change some comments in S/R seaice_calc_viscosities |
722 |
|
o model/src: |
723 |
|
- if staggerTimeStep=T, always apply exchange to velocity field in |
724 |
|
do_stagger_fields_exchanges.F instead of in do_fields_blocking_exchanges.F |
725 |
|
(independent of using multi-dim advection or not); no effect on FWD run |
726 |
|
but affects AD results (at machine truncation level): update output of |
727 |
|
experiment 1D_ocean_ice_column (ad: 12 digits), hs94.1x64x5 (ad,oad: 13.d) |
728 |
|
and isomip (oad: 12.d). |
729 |
|
o pkg/generic_advdiff: |
730 |
|
- stop if doAB_onGtGs is set to FALSE but ignored |
731 |
|
- refine warning related to stability of tracer time-stepping |
732 |
|
regarding internal wave dynamics. |
733 |
|
- setting of AdamsBashforth_T,S when doAB_onGtGs=F: remove condition |
734 |
|
on staggerTimeStep & implicitIntGravWave (will now get a warning |
735 |
|
if potentially unstable). |
736 |
|
o pkg/kl10: |
737 |
|
- add new pkg "kl10" for mixing due to internal wave breaking, from |
738 |
|
http://www.sciencedirect.com/science/article/pii/S1463500310000144 |
739 |
|
(contribution from Jody Klymak), tested in verification experiment |
740 |
|
verification/internal_wave/input.kl10/ |
741 |
|
o isomip experiment: |
742 |
|
- test pkg/shelfice with Non-Lin Free-Surf in one of the FWD set-up |
743 |
|
(input.htd) and update the output. |
744 |
|
o cd_code experiments: |
745 |
|
- use default cd_code options (#undef CD_CODE_NO_AB_MOMENTUM & |
746 |
|
#undef CD_CODE_NO_AB_CORIOLIS) in experiments: cfc_example (fwd) |
747 |
|
global_ocean.90x40x15 (ad & oad) and OpenAD (ad & oad) and |
748 |
|
update the corresponding output. |
749 |
|
o pkg/seaice: |
750 |
|
- reduce the number of include files and store directives in |
751 |
|
S/R seaice_lsr_tridiagu/v |
752 |
|
- change the order of loops in one case in S/R seaice_lsr_tridiagv |
753 |
|
(only for SEAICE_VECTORIZE_LSR_ZEBRA defined), which allows me to |
754 |
|
get rid off one store directive (a TAF bug?) |
755 |
|
- add one more instance of ifdef SEAICE_VECTORIZE_LSR_ZEBRA in |
756 |
|
S/R seaice_lsr_tridiagv to change the loop range for consistency |
757 |
|
- remove ilcall, m from parameter list of S/R seaice_lsr_tridiagu/v |
758 |
|
- fix a bug that affects the JFNK solver: replace sNx/y by i/jMax in |
759 |
|
S/R seaice_lsr_tridiagu/v (requires update of |
760 |
|
offline_exf_seaice/input.dyn_jfnk) |
761 |
|
|
762 |
|
checkpoint65a (2014/07/27) |
763 |
|
o model/src: |
764 |
|
- Non-Lin Free-Surf in p/z coords: allows hFacW,S to be larger than |
765 |
|
surrounding hFacC=1 @ edge of a step with different kSurfC on either side |
766 |
|
(topo in p-coords, ice-shelf in z-coords); update output of experiments |
767 |
|
tutorial_global_oce_in_p and isomip (both AD and OpenAD output). |
768 |
|
o model/src: |
769 |
|
- collect momentum forcing tendency into local 2-D array (passed as argument |
770 |
|
to apply_forcing S/R); this simplifies mom. Forcing diagnostics and CD_CODE |
771 |
|
parts in timestep.F (without CD_CODE_NO_AB_MOMENTUM defined = the default); |
772 |
|
affects results at machine truncation level (e.g., if using OBCS_SPONGE). |
773 |
|
- collect T & S forcing tendency into local 2-D array (passed as argument to |
774 |
|
apply_forcing S/R); add 3-D diagnostics for temp & salt forcing tendency. |
775 |
|
affects results at machine truncation level (e.g., ocean: if using |
776 |
|
SHORTWAVE_HEATING ; atmos: if using FrictionHeating or (atm_Rq<>0) moist |
777 |
|
correction due to vertical advection). |
778 |
|
- update output of experiments: fizhi-cs-32x32x40 (13 digits), |
779 |
|
global_ocean.cs32x15 (fwd: icedyn, seaice, thsice, all 3 @ 11d; adm & tml: |
780 |
|
seaice_dynmix & thsice, fwd grd @ 3 & 8), hs94.1x64x5 (ad grd @ 13), |
781 |
|
obcs_ctrl (ad & fwd grd @ 12 & 7). |
782 |
|
o pkg/ptracers & diagnostics: |
783 |
|
- use ptracers (short) name (instead of long one) to make ptracers diagnostics |
784 |
|
title (to avoid some unexpected truncation); sort out ptracers diags units. |
785 |
|
- collect ptracer forcing tendency into local 2-D array (passed as argument |
786 |
|
to apply_forcing S/R); add 3-D diagnostics for ptracers forcing tendency. |
787 |
|
|
788 |
|
checkpoint65 (2014/07/18) |
789 |
|
o pkg/fizhi: |
790 |
|
- add parenthesis around fizhi tendencies in fizhi_tendency_apply.F: this |
791 |
|
affects results at machine truncation level. Update output of experiments |
792 |
|
fizhi-cs-32x32x40 (12 digits for cg2d) & fizhi-cs-aqualev20 (13 digits). |
793 |
|
o pkg/seaice: more clean up |
794 |
|
- rename TAF common block tapes to be more consistent and remove |
795 |
|
unnecessary duplicates |
796 |
|
- add store directives to remove more recomputations, but use smaller |
797 |
|
tapes (and adjust keys) when SEAICE_LSR_ADJOINT_ITER is undefined. |
798 |
|
The idea behind this flag is to reduce the memory footprint when the |
799 |
|
adjoint of the LSR is not required. As of now, defining the flag |
800 |
|
SEAICE_LSR_ADJOINT_ITER increases 4 common block tapes for 2D field by |
801 |
|
a factor of SOLV_MAX_FIXED (=500 by default in SEAICE_SIZE.h). |
802 |
|
For experiment offline_exf_seaice, this means on a linux box with gfortran |
803 |
|
nearly a factor of 10 (but keep in mind there is mostly seaice code in |
804 |
|
this experiment): |
805 |
|
> size mitgcmuv_ad |
806 |
|
text data bss dec hex |
807 |
|
5100659 1216 220458952 225560827 d71c8fb |
808 |
|
5339425 1200 1868783272 1874123897 6fb4dc79 (SEAICE_LSR_ADJOINT_ITER) |
809 |
|
but only a moderate increase of 36% for global_ocean.cs32x15: |
810 |
|
text data bss dec hex |
811 |
|
6695027 1648 1014578664 1021275339 3cdf6ccb |
812 |
|
6695203 1648 1382505320 1389202171 52cd8afb (SEAICE_LSR_ADJOINT_ITER) |
813 |
|
- note: there are still recomputations in global_ocean.cs32x15 and |
814 |
|
offline_exf_seaice and the gradient agreement changes (gets a |
815 |
|
little worse) for global_ocean.cs32x15 (-> update output_adm.seaice.txt) |
816 |
|
- in general, the AD gradients still are wrong |
817 |
|
o OpenAD |
818 |
|
- clean up code_oad/ directories somewhat by moving files |
819 |
|
dontCompile, dontTransform, keepOriginal to OAD_support/ |
820 |
|
o model/src: |
821 |
|
- using MOM fluxform and Non-Lin Free-Surf with momDissip_In_AB=F |
822 |
|
(not currently tested): add dissipation terms before NLFS rescaling of |
823 |
|
tendencies (previously done after). |
824 |
|
o pkg/diagnostics: |
825 |
|
- write stats-diags in ascii file with more digits (same as in monitor). |
826 |
|
o pkg/down_slope: |
827 |
|
- drop the bi,bj dimension of argument recip_hFac in S/R DWNSLP_APPLY; with |
828 |
|
NLFS (not tested), use new recip_hFac value in order to conserve tracer. |
829 |
|
o model/src: |
830 |
|
- new file "apply_forcing.F" containing all the code previously in |
831 |
|
external_forcing.F, but with new argument list: pass, as new argument, |
832 |
|
the current level tendency array to update (instead of a direct update |
833 |
|
of the common bloc array). Change the corresponding calls. |
834 |
|
- add CPP option USE_OLD_EXTERNAL_FORCING (default is undef) to use |
835 |
|
EXTERNAL_FORCING_U,V,T,S subroutines (for backward compatibility). |
836 |
|
o pkg/seaice/seaice_lsr, a little bit of clean up |
837 |
|
- rearrange some code blocks, so that now all calculations for |
838 |
|
setting up the right-hand-sides done within one single block |
839 |
|
(I find that easier to read and understand) |
840 |
|
- rearrange freedrift-code to reduce the number of ifdefs |
841 |
|
- adjust some indentations and comments |
842 |
|
|
843 |
|
checkpoint64z (2014/07/10) |
844 |
|
o model/src and several pkgs: |
845 |
|
- change argument list of all S/R called from external_forcing.F and |
846 |
|
called from ptracers_forcing.F (renamed to ptracers_apply_forcing.F) |
847 |
|
to pass, as argument, the current level tendency array to update |
848 |
|
(instead of a direct update of the common bloc array). |
849 |
|
- change also (in the same way) argument list of PTRACERS_APPLY_FORCING; |
850 |
|
- rename taueddy_external_forcing.f to taueddy_tendency_apply.F |
851 |
|
o pkg/seaice/seaice_lsr.F |
852 |
|
- always initialize local arrays in seaice_lsr_tridiagu/v |
853 |
|
- add more local tapes to seaice_lsr_tridiagu/v |
854 |
|
- move storing u/vice(:,:,bi,bj) out of seaice_lsr_tridiagu/v, but |
855 |
|
keep it in bi/bj loop; this seems to be essential |
856 |
|
- gradients are still wrong but only by 4-7 orders of magnitude |
857 |
|
instead of 15 orders of magnitude, lab_sea improves a little |
858 |
|
o pkg/seaice |
859 |
|
- (pkg/autodiff) remove storing/restoring of seaiceMaskU/V that |
860 |
|
generates unnecessary code in seaice_lsr_ad |
861 |
|
- add more store directives in seaice_lsr to avoid unnecessary code |
862 |
|
in seaice_lsr_ad |
863 |
|
- exclude some residual computations in seaice_lsr when |
864 |
|
ALLOW_AUTODIFF_TAMC is defined in order to avoid unnecessary code |
865 |
|
in seaice_lsr_ad |
866 |
|
- add more storing, a new tape (model/src/the_main_loop.F) and |
867 |
|
another key for SEAICE_LSR_VECTORIZE_ZEBRA (the local keys ilockey |
868 |
|
and klockey should be checked by a specialist) |
869 |
|
- modify ( define SEAICE_VECTORIZE_LSR and SEAICE_LSR_ADJOINT_ITER ) |
870 |
|
and update lab_sea after previous changes in pkg/seaice below |
871 |
|
o pkg/autodiff: |
872 |
|
- introduce useSmoothCorrel2DinAdMode, SEAICEapproxLevInAd, and |
873 |
|
viscFacInAd : run time parameters allowing for adjoint switches |
874 |
|
note : logic for useSmoothCorrel2DinAdMode is in ctrl_readparms.F |
875 |
|
o pkg/ecco: |
876 |
|
- introduce cost_gencost_boxmean.F that computes a box mean |
877 |
|
temperature (for use in adjoint sensitivity studies). |
878 |
|
o model/src/set_defaults.F : initialize viscFacAdj to 1. |
879 |
|
o pkg/mom_common/mom_calc_visc.F: |
880 |
|
- ifdef ALLOW_AUTODIFF then include viscFacAdj factor. |
881 |
|
o pkg/seaice/seaice_summary.F: |
882 |
|
- statement for SEAICEadjMODE now in autodiff_readparms.F |
883 |
|
o pkg/seaice: |
884 |
|
- remove some store directives and add new ones in an effort to get |
885 |
|
finally rid off the recomputation warnings. This is successful |
886 |
|
when SEAICE_VECTORIZE_LSR ***and*** SEAICE_LSR_ADJOINT_ITER are |
887 |
|
defined (i.e. no extensive recomputation warnings left), but there |
888 |
|
are still too many recomputations on the solver iteration level |
889 |
|
- define SEAICE_VECTORISZE_LSR in offline_exf_seaice/code_ad/SEAICE_OPTIONS.h |
890 |
|
- move definition of MPSEUDOTIMESTEPS into TAMC-block in |
891 |
|
SEAICE_SIZE.h |
892 |
|
- add a store directive in S/R seaice_calc_viscosities |
893 |
|
o pkg/seaice (ITD code): |
894 |
|
- fix definition of Hlimit for multi-threaded case |
895 |
|
- use double precision arithmetic to compute Hlimit: this affects results; |
896 |
|
update output of experiment seaice_itd. |
897 |
|
o replace content of verification/seaice_itd |
898 |
|
- instead of a 1D column use the configuration of offline_exf_seaice |
899 |
|
to test the ice thickness distribution code with ridging |
900 |
|
- this is a first shot at this experiment |
901 |
|
- change of some defaults of ridging parameters SEAICEhStar (from |
902 |
|
100 to 25) and SEAICEmuRidging (from 5 to 3) in seaice_readparms.F |
903 |
|
and lot of new comments. |
904 |
|
|
905 |
|
checkpoint64y (2014/06/20) |
906 |
|
o pkg/seaice/seaice_reg_ridge.F: |
907 |
|
- modify the regularization of very small volumes of ice; only check |
908 |
|
total volume HEFF, and do not apply correction to individual ice |
909 |
|
classes because that leads to funny patterns in the heat and fw-fluxes |
910 |
|
into the ocean. Adjust seaice_itd/results/output.txt |
911 |
|
- replace nITD by SEAICE_multDim in loop-ranges |
912 |
|
o pkg/exf: |
913 |
|
- add code to process the case field period = -12. with UV interpolation. |
914 |
|
- move debug print (formerly active when exf_verbose=T) from EXF_getFFieldRec |
915 |
|
into S/R that calls it (i.e., exf_set_gen.F, exf_set_uv.F & obcs_exf_load.F) |
916 |
|
o verification/global_with_exf: |
917 |
|
- switch all fields period to -12. (was previously untested) in input/data.exf |
918 |
|
(but keep secondary test ".yearly" unchanged); update the reference output. |
919 |
|
o pkg/cal: |
920 |
|
- new calendar type "noLeapYear" for 365 days calendar without any leap year. |
921 |
|
o pkg/exf: |
922 |
|
- new integer parameter "exf_debugLev" (default set to main model debugLevel) |
923 |
|
to replace logical switch "exf_verbose" |
924 |
|
- report in STDOUT when loading a new record (if exf_debugLev >= 3) |
925 |
|
o pkg/sbo: |
926 |
|
- update from Katherine Quinn: evaluate mass directly from density and SSH |
927 |
|
(budget using Finite Volume method) instead of from bottom pressure. |
928 |
|
- allow testreport to collect few selected SBO output ; tested in exp. |
929 |
|
global_ocean.90x40x15 (after updating the results, to include SBO output). |
930 |
|
- fix some multi-threading issues (in output part). |
931 |
|
o model/src & most packages: |
932 |
|
- always call {PKG}_READPARMS even if corresponding use{PKG}=F; |
933 |
|
- in {PKG}_READPARMS, in case use{PKG}=F: add a call to new S/R |
934 |
|
PACKAGES_UNUSED_MSG to print a weak warning when parameter file |
935 |
|
"data.{pkg}" exist ; and leave the S/R (return) just after. |
936 |
|
- more standard LAND pkg interface (land_init_fixed.F, land_check.F). |
937 |
|
+ call LAND_READPARMS from packages_readparms.F |
938 |
|
o pkg/seaice: |
939 |
|
- remove code that resets useThSice in S/R seaice_readparms and |
940 |
|
replace it by a warning in S/R seaice_check |
941 |
|
- remove parameter MULTDIM, replace with nITD and runtime |
942 |
|
parameter SEAICE_multDim (still hard-wired to nITD if |
943 |
|
SEAICE_ITD is defined) |
944 |
|
|
945 |
|
checkpoint64x (2014/05/24) |
946 |
|
o verification/lab_sea: |
947 |
|
- update adjoint and TLM output following changes to pkg/salt_plume |
948 |
|
- un-do the update after putting back local recip_Cp in few places. |
949 |
|
o pkg/salt_plume: modifications by An Nguyen: |
950 |
|
- add capability to do brine rejection (salt-plume) as function of |
951 |
|
volume+tracers (instead of only salinity tracer). |
952 |
|
- conserve volume by exchanging volume from each kLev to above to |
953 |
|
accommodate in-coming brine volume |
954 |
|
- store surface and klev exchanged fraction + volume in 4 new 3-d arrays |
955 |
|
- switch KPP surf buoyancy due to brine forcing to 3-d |
956 |
|
(3 more 3-d arrays, 2 for SPforcing[T,S], 1 for boplume) |
957 |
|
- add salt_plume_volfrac, salt_plume_apply, salt_plume_tendency_apply_t |
958 |
|
- unrelatedly, also add ad-hoc capability to vary salt_plume scheme |
959 |
|
in East/West Arctic. |
960 |
|
o pkg/sbo: |
961 |
|
- incorporate modifications from Katherine Quinn to enable the use of sbo |
962 |
|
pkg in ECCO-v4 set-up ; remove SBO-TimeAve output ; add monitor-like |
963 |
|
output for future testreport verification (unfinished). |
964 |
|
o pkg/atm_phys: |
965 |
|
- change diagnostics (AtPh_Trf & AtPh_Qrf) of DARGAN_BETTSMILLER S/R: |
966 |
|
skip the reseting of t_ref & q_ref to initial t & q ; this preserve the |
967 |
|
output of S/R CAPECALCNEW (Parcel temp & q) for diagnostics. |
968 |
|
o pkg/seaice |
969 |
|
seaice_calc_ice_strength.F: modify expression to avoid divisions |
970 |
|
(affects truncation) |
971 |
|
seaice_do_ridging.F: clean up the insectarium |
972 |
|
- fix a bug that was compensated by areaScaling (-> remove areaScaling code) |
973 |
|
- added SEAICEsnowFracRidge to redistributed snow (2nd bug) |
974 |
|
- set closing/openingRate to zero where no extra iteration is need (3rd bug) |
975 |
|
- add some debugging information and error messages (warnings) |
976 |
|
o model/src: modifications relatd to atmosphere p*: |
977 |
|
- Switch to more accurate p* coordinate slope term (calc_grad_phi_hyd.F) |
978 |
|
- With p* or Sigma-P, use constant reference Pot.Temp (thetaConst) instead |
979 |
|
of vertical profile tRef in geopotential background and anomaly. |
980 |
|
- Acount for true p* correction in theta <-> T conversion in pkg/aim_v23 |
981 |
|
and pkg/atm_phys. |
982 |
|
- Update FWD output of experiments: aim.5l_cs (x2), fizhi-cs-32x32x40, |
983 |
|
fizhi-cs-aqualev20, fizhi-gridalt-hs, tutorial_held_suarez_cs, cpl_aim+ocn. |
984 |
|
o pkg/seaice: fix a bug in seaice_prepare_ridging.F, forgot a sqrt |
985 |
|
o pkg/ptracers: compute ptracer source/sink due to linear free surface. |
986 |
|
not used right now, but can be used in BGC packages to fix conservation. |
987 |
|
o pkg/dic, pkg/gchem: move tracer_meanarea to gchem, so it can be used by |
988 |
|
other packages too. |
989 |
|
o pkg/seaice/seaice_calc_ice_strength.F: replace SEAICE_rhoSnow by |
990 |
|
SEAICE_rhoIce in the Rothrock (1975)-type strength calculations (bug fix) |
991 |
|
o model/src: |
992 |
|
- since we have several heat capacity (even in model/src), define "recip_Cp" |
993 |
|
as local variable (no longer in common block) to avoid any confusion. |
994 |
|
- add thetaConst in PARAMS.h (to be used with pStar or sigma-P coords). |
995 |
|
o pkg/exf: |
996 |
|
- from Jeff Scott: add option (#define EXF_CALC_ATMRHO) to calculate local |
997 |
|
air density as function of air Temp, Humidity and atm pressure. |
998 |
|
|
999 |
|
checkpoint64w (2014/05/02) |
1000 |
|
o verification: |
1001 |
|
- update output_adm.txt files for experiment global_ocean.cs32x15 (seaice & |
1002 |
|
seaice_dynmix) and lab_sea (primary test & noseaicedyn): moving/changing |
1003 |
|
code from seaice_growth.F & seaice_advdiff.F to new ridging routines |
1004 |
|
seaice_reg_ridge.F seaice_do_ridging.F affects AD gradient |
1005 |
|
(down to 8-7 matching digits for global_ocean and 5-6 for lab_sea). |
1006 |
|
o model/src: for atmosphere in p* coords: |
1007 |
|
- store factor rStarFacC**atm_kappa (= pStarFacK) in common block |
1008 |
|
- implement more accurate p* coordinate slope term (in calc_grad_phi_hyd.F), |
1009 |
|
but not yet activated. |
1010 |
|
o pkg/seaice: fix restart problem for ITD with new ice strength parameterisation: |
1011 |
|
- move computation of opnWtrFrac = 1-AREA to before computing ice strength |
1012 |
|
- this changes the results (but not for any verification experiment, because |
1013 |
|
none tests this), but avoids having an extra field in the restart files |
1014 |
|
o pkg/seaice: remove global variable TICE (not needed) |
1015 |
|
- replace by TICES or local variable where necessary (cost_seaice_test, |
1016 |
|
seaice_diagnostics_state) |
1017 |
|
- move copying TICE to TICES from seaice_check_pickup to seaice_read_pickup |
1018 |
|
- use specific read/write routines for reading and writing individual leves |
1019 |
|
of a multilevel field |
1020 |
|
o pkg/ctrl & model/inc: |
1021 |
|
- move additional anomaly fields of control vars (related to options: |
1022 |
|
ALLOW_KAPGM_CONTROL, ALLOW_KAPREDI_CONTROL and ALLOW_BOTTOMDRAG_CONTROL) |
1023 |
|
from DYNVARS.h into new header file: CTRL_FIELDS.h |
1024 |
|
o pkg/seaice: some small modifications to the ridging code |
1025 |
|
- make fw2ObyRidge a global variable and add the freshwater flux to |
1026 |
|
seaice_growth |
1027 |
|
- pass actual thickness from seaice_prepare_ridging, so that it is |
1028 |
|
computed only in one place and compute it in the same way as in |
1029 |
|
seaice_growth |
1030 |
|
- initialise more fields in seaice_do_ridging that where cause floating |
1031 |
|
point exceptions over land |
1032 |
|
o pkg/seaice: preparations for ridging code and first real ridging code |
1033 |
|
- move most of "PART 1" of S/R seaice_growth into a new and separate |
1034 |
|
S/R seaice_reg_ridge that will both regularize the state variable after |
1035 |
|
advection call the actual ridging routine; |
1036 |
|
- requires to make 5 fields global fields: d_HEFFbyNEG,d_HSNWbyNEG, |
1037 |
|
d_AREAbyRLX,d_HEFFbyRLX,saltFluxAdjust; |
1038 |
|
- remove ridging code from seaice_advdiff |
1039 |
|
- clean up remaining part 1 of seaice_growth in an attempt to make it |
1040 |
|
more readable (this is probably subjective) |
1041 |
|
- call seaice_itd_redist once in the initialisation phase to have the initial |
1042 |
|
conditions in the correct category |
1043 |
|
- finally: add new ridging routine for ITD code |
1044 |
|
|
1045 |
|
checkpoint64v (2014/04/11) |
1046 |
|
o pkg/ecco: |
1047 |
|
- add runtime parameters mdt[start,end]date[1,2] |
1048 |
|
- rename variable "tpmean" as "mdt" and "topexmeanfile" as "mdtdatfile" |
1049 |
|
o pkg/seaice: |
1050 |
|
- make deltaC a global variable, so that it can be used in ridging code |
1051 |
|
- first step towards ridging: introduce new routines that compute |
1052 |
|
ice strength based on ridging parameters |
1053 |
|
- add diagnostic for HSNOWITD |
1054 |
|
- add opnWtrFrac as a global variable (required for ridging scheme) |
1055 |
|
o pkg/salt_plume + pkg/seaice/seaice_growth.F |
1056 |
|
- add SALT_PLUME_IN_LEADS flag to activate pkg/salt_plume only when ice |
1057 |
|
AREA exceeds a threshold (code contributed by I.Fenty in 2011) |
1058 |
|
o verification/hs94.1x64x5: |
1059 |
|
- leave ALLOW_AUTODIFF_TAMC undefined in code_oad/AUTODIFF_OPTIONS.h |
1060 |
|
- do not use ECCO_CPPOPTIONS.h anymore for TAF & OpenAD Adjoint tests. |
1061 |
|
o autodiff: |
1062 |
|
- Start to include explicitly AUTODIFF_OPTIONS.h, COST_OPTIONS.h, |
1063 |
|
and CTRL_OPTIONS.h in src files (to enable to skip the ECCO_CPPOPTIONS.h) |
1064 |
|
For now, only in pkgs used in verification/hs94.1x64x5. |
1065 |
|
- Replace ALLOW_AUTODIFF_TAMC by ALLOW_AUTODIFF (except for tape/storage |
1066 |
|
which are specific to TAF/TAMC). |
1067 |
|
- Replace ALLOW_AUTODIFF_OPENAD by ALLOW_OPENAD: |
1068 |
|
since ALLOW_OPENAD is defined in PACKAGES_CONFIG.h (any time pkg/openad |
1069 |
|
is compiled), this simplifies/reduces which *_OPTIONS.h file to include. |
1070 |
|
- OpenAD: change Makefile to generate the appropriate AD_CONFIG.h when |
1071 |
|
building mitgcmuv_ad (make adAll). |
1072 |
|
o pkg/ecco: |
1073 |
|
- cost_gencost_seaicev4.F: |
1074 |
|
reformulate proxy cost as function of sst and local param SEAICE_freeze |
1075 |
|
change cost names from siv4-[sst,vol] to siv4-[deconc,exconc] |
1076 |
|
- add stop statement if old names siv4-[sst,vol] are used |
1077 |
|
- add snapshots + cost reports for atmospheric longwave |
1078 |
|
- remove factor 0.1 in front of wtau[u,v] |
1079 |
|
- replace never used flag ALLOW_TMI_COST_CONTRIBUTION with |
1080 |
|
ALLOW_TMI_SST_COST_CONTRIBUTION |
1081 |
|
o pkg/atm_phys: |
1082 |
|
- add some diagnostics for Short-wave and for convection S/R. |
1083 |
|
o pkg/seaice/seaice_growth: |
1084 |
|
- fix a bug in the lateral melt parameterization for SEAICE_ITD |
1085 |
|
in seaice_growth; tempFrz needs to be computed inside the i/j-loop |
1086 |
|
- rearrange loop order for better vector code in the same code block |
1087 |
|
- rewrite the floeDiameter formula to have fewer divisions |
1088 |
|
- (miraculously) none of this changes the results of seaice_itd |
1089 |
|
o pkg/smooth: |
1090 |
|
- move param smooth2Ddiffnbt to pkg/ecco |
1091 |
|
o pkg/salt_plume: |
1092 |
|
- salt_plume_frac.F: |
1093 |
|
clean up local param names |
1094 |
|
reformulate (1-frac) to frac; original 1-frac was based on swfrac code |
1095 |
|
o pkg/rw: |
1096 |
|
- add RS version of S/R READ_MFLDS_LEV. |
1097 |
|
o pkg/streamice: |
1098 |
|
- fix the restart test by writing/reading pickup_streamice files. |
1099 |
|
o pkg/seaice: |
1100 |
|
- refine checks for jfnk-related parameters |
1101 |
|
- comment out if statement with SEAICEuseIMEX parameter as long as there |
1102 |
|
is no IMEX code to avoid confusion and surprises |
1103 |
|
|
1104 |
|
checkpoint64u (2014/03/07) |
1105 |
|
o verification/MLAdjust: |
1106 |
|
- rename secondary test suffix: |
1107 |
|
1.leith -> A4FlxF + switch to flux-form & add side-drag |
1108 |
|
0.leithD -> AhFlxF + switch to flux-form |
1109 |
|
0.smag -> AhVrDv (use Vorticity-Div. visc form) + add side-drag |
1110 |
|
0.leith -> AhStTn (use Strain-Tension visc form) + add side-drag |
1111 |
|
o pkg/mom_vecinv: |
1112 |
|
- remove unused arguments from S/R MOM_VI_HDISSIP & MOM_HDISSIP (as it used |
1113 |
|
to be before mom_calc_visc.F) |
1114 |
|
- skip the call to MOM_CALC_TENSION & MOM_CALC_STRAIN if not needed. |
1115 |
|
- add 2nd copy of vort3 & strain that knows about lateral BC (free/no slip): |
1116 |
|
this is simpler for the adjoint and for diagnostics. |
1117 |
|
o model/src + pkg/momentum: |
1118 |
|
- add input files for 2-D additional Western and Southern cell-edge wall |
1119 |
|
(e.g., to add "thin-wall" where it is =1). |
1120 |
|
- fix sideDrag option for thin-walls with Non-Lin Free-Surf |
1121 |
|
using 2nd hFacZ that is computed from initial (fix domain) hFac |
1122 |
|
- known limitations of thin wall implementation: not yet coded for sigma |
1123 |
|
coords; not working with CD-scheme neither. |
1124 |
|
o pkg/seaice: |
1125 |
|
- rename recently introduced parameters from (wrong name) AB to |
1126 |
|
BDF (backward difference time discretisation) |
1127 |
|
- retire runtime parameters SEAICEuseAB2, SEAICE_abEps |
1128 |
|
o tools/adjoint_options: |
1129 |
|
- remove setting of "OPENAD=true" (now set by command line "genmake2 -oad") |
1130 |
|
|
1131 |
|
checkpoint64t (2014/02/01) |
1132 |
|
o pkg/ecco |
1133 |
|
- add compile flag ALLOW_GENCOST_TIMEVARY_WEIGHT in ECCO_OPTIONS.h and |
1134 |
|
runtime logical flag gencost_timevaryweight to read daily sea-ice sigma |
1135 |
|
- replace hard-coded record number and period which only work for monthly |
1136 |
|
with read-in runtime param that works for other periods (month,day,year) |
1137 |
|
o pkg/thsice |
1138 |
|
- corrected store directive fixes thsice adjoint gradient checks |
1139 |
|
o genmake2 & testreport: |
1140 |
|
- add genmake2 option "-oad" to generate a Makefile for OpenAD built and |
1141 |
|
in this case, use tools/adjoint_options/adjoint_oad as default AD optfile. |
1142 |
|
Update testreport accordingly. No need to set "export OPENAD=true" |
1143 |
|
in adjoint_options/adjoint_oad anymore (will be removed later). |
1144 |
|
o pkg/shelfice: |
1145 |
|
- put T & S shelfice forcing into model surfaceForcing_T,_S (for now, |
1146 |
|
only if SHELFICEboundaryLayer=F); Change model/src/external_forcing.F |
1147 |
|
so that surface forcing applies to k=kSurf if using pkg/shelfice. |
1148 |
|
o pkg/ctrl, pkg/grdchk, pkg/ecco: |
1149 |
|
- Changes to make GENARR more modular (i.e. invisible if not used) |
1150 |
|
o model/src/temp_integrate.F and salt_integrate.F |
1151 |
|
- re-include store directives that were removed on Dec 27th. |
1152 |
|
o model/src/external_forcing_surf.F |
1153 |
|
- add storage directives for EmPmR and PmEpR to avoid recomputation of |
1154 |
|
seaice_model in the adjoint that is problematic when seaice_model is |
1155 |
|
turned off in the adjoint. The resolved issue dated back to July when |
1156 |
|
EXTERNAL_FORCING_SURF call was moved. |
1157 |
|
Update global_ocean.cs32x15/*/output_adm.seaice_dynmix.txt accordingly. |
1158 |
|
o pkg/exf/exf_check.F |
1159 |
|
- fix a small bug again (originally found by Wentao Liu, now found again) |
1160 |
|
- streamline error output |
1161 |
|
o pkg/streamice and aim_v23: |
1162 |
|
- replace a few "_EXCH_XY_RL (" with "_EXCH_XY_RL(", so that |
1163 |
|
Apple's /usr/bin/cpp knows what to do: |
1164 |
|
Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) |
1165 |
|
Target: x86_64-apple-darwin13.0.0 |
1166 |
|
|
1167 |
|
checkpoint64s (2014/01/05) |
1168 |
|
o tools/adjoint_options: |
1169 |
|
- switch to fastopt.net TAF server (instead of default fastopt.de) for |
1170 |
|
AD optfiles adjoint_diva & adjoint_f95 (similar to adjoint_default). |
1171 |
|
o model/src: |
1172 |
|
- remove some unnecessary TAF storage directives in forward_step.F and |
1173 |
|
in dynamics.F (note: not always removed by TAF, e.g., double storage |
1174 |
|
of kappaRU,kappaRV in former version of dynamics.F). |
1175 |
|
o model/src & pkg/ptracers: |
1176 |
|
- call directly GAD_IMPLICIT_R & IMPLDIFF + DWNSLP_APPLY from temp_integrate.F |
1177 |
|
salt_integrate.F and ptracers_integrate.F (instead of from thermodynamics.F) |
1178 |
|
and remove ptracers_dwnslp_apply.F & ptracers_implicit.F |
1179 |
|
- call MATRIX_STORE_TENDENCY_EXP for each tracer (in ptracers_integrate.F) |
1180 |
|
- add fZon & fMer as output argument of S/R GAD_CALC_RHS. |
1181 |
|
- update TAF AD-output of experiments global_ocean.90x40x15 (13 for AD-grad). |
1182 |
|
o useSingleCpuInput separates single-CPU input from single-CPU output; |
1183 |
|
for now only implemented for in exf_interp_read.F |
1184 |
|
o verification/advect_xy: |
1185 |
|
- fix missing EXCH call in local version of ini_salt.F and update output. |
1186 |
|
o momentum diagnostics: |
1187 |
|
- fix which deltaT is used in Total-Tendency diagnostics. |
1188 |
|
- fix typo in diagnostics for momentum tendency from AB. |
1189 |
|
o pkg/seaice/seaice_lsr.F: fix an initialisation bug for the |
1190 |
|
SEAICE_VECTORIZE_LSR_ZEBRA option that lead to NaNs on a NEC-SX8 |
1191 |
|
|
1192 |
|
checkpoint64r (2013/12/08) |
1193 |
|
o verification/*/results: |
1194 |
|
- Update reference output of experiments that were passing with just 13 digits |
1195 |
|
(make it easier to detect future changes in results) |
1196 |
|
o model/src & pkg/ptracers: |
1197 |
|
- move calls to GAD_ADVECTION (Multi-Dim advection) from thermodynamics.F to |
1198 |
|
inside temp_integrate.F and salt_integrate.F and from ptracers_advection.F |
1199 |
|
to inside ptracers_integrate.F ; remove ptracers_advection.F |
1200 |
|
o coupling interface pkgs: |
1201 |
|
[atm_compon_interf, ocn_compon_interf & atm_ocn_coupler] |
1202 |
|
- change the config check to test the agreement of Ocean Depth |
1203 |
|
with ATM land/sea mask (instead of ATM orography); |
1204 |
|
- send to coupler the number of coupler time-steps to do for this run: |
1205 |
|
this allows to check for consistency and don't need anymore to be |
1206 |
|
specified in parameter file "data"; |
1207 |
|
in coupler: |
1208 |
|
- check consistency of RunOff map versus Ocean Depth and ATM land/sea mask. |
1209 |
|
- improve report to log-file of config setting (pass log-file unit to few S/R) |
1210 |
|
o pkg/compon_communic: |
1211 |
|
- add coupling send/receive for non-tiled integer vector; |
1212 |
|
- add S/R to check and stop if any proc has an error (similar to |
1213 |
|
eesupp/src/stop_if_error.F but single thread and across Comm_World). |
1214 |
|
o pkg/exch2: |
1215 |
|
- in exch2*_get_rx[1,2]: use new list "W2_tileIndex" to replace search |
1216 |
|
through list of all tiles my proc owns. |
1217 |
|
o model/src: |
1218 |
|
- AUTODIFF only: in calc_adv_flow.F, recompute rTransKp (instead of copying |
1219 |
|
from rTrans) to simplify dependencies (no need to store rTrans anymore in |
1220 |
|
calling S/R); this affects AD results at machine truncation level: |
1221 |
|
update AD-output (TAF) of experiments: 1D_ocean_ice_column, |
1222 |
|
bottom_ctrl_5x5 & obcs_ctrl (12 digits for AD grad, same FWD grad). |
1223 |
|
o tools/build_options: |
1224 |
|
- simplify Warnings options (-ieee & -devel cases) in linux_amd64_gfortran |
1225 |
|
o coupling interface pkgs: |
1226 |
|
[compon_communic, atm_compon_interf & ocn_compon_interf] |
1227 |
|
- move declaration of local array "ibuf" out of header file "CPLR_SIG.h" |
1228 |
|
to each S/R that needs it; remove un-used variables. |
1229 |
|
- change component tile registration (cpl_register.F in both compon_interf |
1230 |
|
and mitcomponent_tile_register.F) to pass the full list of tiles |
1231 |
|
information (including bi,bj) in 1 vector (instead of in a bi,bj matrix). |
1232 |
|
- with pkg/exch2: adopt the same convention used for I/O to define mapping |
1233 |
|
towards coupler global array (unless W2_useE2ioLayOut=F): |
1234 |
|
a) can now use different tiling between atm & ocn comp. |
1235 |
|
b) no needs to modify the run-Off map when changing tiling (was needed |
1236 |
|
even if using the same tiling between atm & ocn). |
1237 |
|
c) will allow to run with blank-tiles in 1 component (e.g., for ocean |
1238 |
|
full land tiles); not yet tested. |
1239 |
|
- check for valid mapping from comp. tile to coupler global array |
1240 |
|
- improve report of tile registration results to log file. |
1241 |
|
o pkg/exch2: |
1242 |
|
- in eesupp/src/eeboot.F: move call to W2_EEBOOT before Coupler |
1243 |
|
tile-registration (CPL_REGISTER); |
1244 |
|
- activate (un-comment) definition and setting of "W2_tileIndex" list to |
1245 |
|
store the local bi,bj indices of each tile; |
1246 |
|
- also print bi,bj in local report to log file; |
1247 |
|
- fix pkg/debug/debug_cs_corner_uv.F for the case nSy > 1 (left from |
1248 |
|
Jun 2009 modif of pkg/exch2). |
1249 |
|
o testing on baudelaire: |
1250 |
|
- run 2 tests at a time: no significant slow down (since enough cpu) and |
1251 |
|
get the full set of test done earlier |
1252 |
|
- switch the ifort test to "-devel" ; run the OpenAD test everyday. |
1253 |
|
o model/src/thermodynamics.F and routines called from it: |
1254 |
|
- pkg/gmredi: gmredi_residual_flow.F (replacing gmredi_calc_uvflow.F & |
1255 |
|
gmredi_calc_wflow.F) to update eulerian velocity (input) into residual |
1256 |
|
velocity (outp) by adding bolus velocity. |
1257 |
|
- model/src: calc_adv_flow.F (replacing calc_common_factors.F) to compute |
1258 |
|
mass transport from velocity + lateral grid cell area |
1259 |
|
- rename calc_gt.F to temp_integrate.F (includes call to TIMESTEP_TRACER) |
1260 |
|
- rename calc_gs.F to salt_integrate.F (includes call to TIMESTEP_TRACER) |
1261 |
|
in thermodynamics.F |
1262 |
|
- remove k from thermodynamics.F and move it to temp_integrate.F |
1263 |
|
salt_integrate.F and ptracers_integrate.F (now done inside the tracer |
1264 |
|
loop). |
1265 |
|
- compute locally (in thermodynamics.F) 3-D velocity field that is used to |
1266 |
|
advect tracers; pass it as argument to GAD_ADVECTION, GAD_SOM_ADVECT, |
1267 |
|
PTRACERS_ADVECTION, TEMP_INTEGRATE, SALT_INTEGRATE, PTRACERS_INTEGRATE, |
1268 |
|
GAD_IMPLICIT_R and PTRACERS_IMPLICIT |
1269 |
|
- update AD-output (TAF & OAD) of experiments: 1D_ocean_ice_column, |
1270 |
|
global_ocean.90x40x15, tutorial_global_oce_biogeo and |
1271 |
|
tutorial_tracer_adjsens (+ TLM output). |
1272 |
|
o tools/OAD_support and (verification/*/) code_oad: |
1273 |
|
- OAD_support/cb2mGetModules.csh: add PACKAGES_CONFIG.h in header file to |
1274 |
|
module conversion ; remove unneeded CPP_EEOPTIONS.h. |
1275 |
|
- code_oad/CPP_OPTIONS.h: remove PACKAGES_CONFIG.h and use a more standard |
1276 |
|
version (closer to model/inc/CPP_OPTIONS.h). |
1277 |
|
o model/src: |
1278 |
|
- remove parameter "useOldFreezing" from PARAMS.h and push it to the |
1279 |
|
retired list of parameters (routine FREEZE has been replace by surface |
1280 |
|
freezing (10.yrs ago) and by pkg/frazil (interior freezing). |
1281 |
|
o pkg/gmredi: |
1282 |
|
- add option (GM_CALC_TRANSP_FROM_VEL) to compute transport directly from |
1283 |
|
velocity (same scheme but affects machine truncation) for GM_AdvForm. |
1284 |
|
- update output of FWD experiments: front_relax.bvp, |
1285 |
|
global_ocean.90x40x15.dwnslp, global_ocean.cs32x15 and ideal_2D_oce. |
1286 |
|
|
1287 |
|
checkpoint64q (2013/11/17) |
1288 |
|
o verification: |
1289 |
|
- generate new output on baudelaire (gfortran, -ieee) for OpenAD experiments |
1290 |
|
tutorial_global_oce_biogeo and global_ocean.90x40x15. |
1291 |
|
- generate new output (growth & melt) for seaice_itd experiment after |
1292 |
|
updating the input pickup_seaice files (previously wrong). |
1293 |
|
o pkg/cost: |
1294 |
|
- define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL |
1295 |
|
(instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads: |
1296 |
|
o this fixes global-sum value if multi-threads (since GLOBAL_SUM_RL |
1297 |
|
cannot be applied to var in common block). |
1298 |
|
o allows to get results independent of tile-per-proc setting (if using |
1299 |
|
slower GLOBAL_SUM_SEND_RECV option). |
1300 |
|
- update accordingly: seaice_cost_final.F, shelfice_cost_final.F, |
1301 |
|
thsice_cost_final.F and ecco_cost_final.F (this one affects lab_sea |
1302 |
|
forward gradients: update output). |
1303 |
|
- update */code_oad/externalDummies.F by adding dummy GLOBAL_SUM_TILE_RL |
1304 |
|
S/R and, for most exp., also comment out GLOBAL_SUM_R8. |
1305 |
|
o pkg/mom_common: |
1306 |
|
- move to pkg/mom_common and model/src (previously in tutorial_deep_convection |
1307 |
|
code) 2nd version of isotropic 3-D Smagorinsky code interface: strain and |
1308 |
|
viscosity are locally declared in dynmics.F and pass as argument to CALC_GW; |
1309 |
|
ensure that all field value that are used are set. |
1310 |
|
o tutorial_deep_convection (smag3d): |
1311 |
|
- add missing scaling in mom_calc_smag_3d.F; |
1312 |
|
- set smag3D_coeff in input.smag3d such that results do not change. |
1313 |
|
o pkg/dic: |
1314 |
|
- change dic_cost.F to compute cost on each tile first and then apply |
1315 |
|
GLOBAL_SUM_TILE_RL: this affects forward gradient of AD experiments |
1316 |
|
tutorial_dic_adjoffline & tutorial_global_oce_biogeo; update output. |
1317 |
|
- remove kLev argument and use GLOBAL_SUM_TILE_RL in tracer_meanarea. |
1318 |
|
o eesupp/src & pkg/mdsio: |
1319 |
|
- remove gather/scatter_vector.F (from eesupp) and mdsio_read/writevector.F |
1320 |
|
(from pkg/mdsio) since they are no longer used for tape IO. |
1321 |
|
- move simple C subroutine "setdir.c" from pkg/compon_communic to eesupp/src |
1322 |
|
(+ keep a copy in pkg/atm_ocn_coupler). |
1323 |
|
o verification/isomip: |
1324 |
|
- split domain in 8 squared tiles (instead of just 2) for FWD, AD & OAD tests. |
1325 |
|
o tools/build_options: |
1326 |
|
- optfile linux_amd64_ifort11, fast (no ieee) case: |
1327 |
|
to get a working restart for all experiments, add "-fp-model source" |
1328 |
|
to FOPTIM (also remove "-opt-streaming-stores auto" <- this is the default). |
1329 |
|
|
1330 |
|
checkpoint64p (2013/10/20) |
1331 |
|
o pkg/autodiff: |
1332 |
|
- adread_adwrite.F: when type and length do not match ALLOW_AUTODIFF_WHTAPEIO |
1333 |
|
criteria, return to simple (default) tape IO format. |
1334 |
|
o pkg/mdsio (+ eesupp/src): |
1335 |
|
- rewrite/simplify tape-IO S/R (new S/R MDS_READ/WRITE_TAPE replace |
1336 |
|
previous MDSREAD/WRITEVECTOR) with 2 array argument from each type (R4/R8); |
1337 |
|
- fix globalFile and singleCpuIO options using simpler global mapping. |
1338 |
|
- new pairs of scatter/gather vector S/R (one for each type, generated from |
1339 |
|
template) corresponding to simpler global mapping. |
1340 |
|
- adread_write.F: switch to new S/R (but leave old calls commented) and write |
1341 |
|
to globalFile when parameter globalFiles is set to True. |
1342 |
|
- switch on useSingleCpuIO in AD experiments: global_ocean.90x40x15 & isomip. |
1343 |
|
o pkg/autodiff: |
1344 |
|
- adread_adwrite.F: add a hack for RS arrays (when RS=real*4); |
1345 |
|
with ALLOW_AUTODIFF_WHTAPEIO defined, since corresponding (real*4) is |
1346 |
|
missing, just add a STOP if array type do not match. |
1347 |
o pkg/exf: |
o pkg/exf: |
1348 |
- to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice: |
- to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice: |
1349 |
rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION |
rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION |