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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o model/src/thermodynamics.F and routines called from it: |
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- pkg/gmredi: gmredi_residual_flow.F (replacing gmredi_calc_uvflow.F & |
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gmredi_calc_wflow.F) to update eulerian velocity (input) into residual |
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velocity (outp) by adding bolus velocity. |
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- model/src: calc_adv_flow.F (replacing calc_common_factors.F) to compute |
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mass transport from velocity + lateral grid cell area |
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- rename calc_gt.F to temp_integrate.F (includes call to TIMESTEP_TRACER) |
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- rename calc_gs.F to salt_integrate.F (includes call to TIMESTEP_TRACER) |
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in thermodynamics.F |
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- remove k from thermodynamics.F and move it to temp_integrate.F |
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salt_integrate.F and ptracers_integrate.F (now done inside the tracer |
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loop). |
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- compute locally (in thermodynamics.F) 3-D velocity field that is used to |
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advect tracers; pass it as argument to GAD_ADVECTION, GAD_SOM_ADVECT, |
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PTRACERS_ADVECTION, TEMP_INTEGRATE, SALT_INTEGRATE, PTRACERS_INTEGRATE, |
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GAD_IMPLICIT_R and PTRACERS_IMPLICIT |
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- update AD-output (TAF & OAD) of experiments: 1D_ocean_ice_column, |
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global_ocean.90x40x15, tutorial_global_oce_biogeo and |
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tutorial_tracer_adjsens (+ TLM output). |
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o toolm/OAD_support and (verification/*/) code_oad: |
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- OAD_support/cb2mGetModules.csh: add PACKAGES_CONFIG.h in header file to |
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module conversion ; remove unneeded CPP_EEOPTIONS.h. |
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- code_oad/CPP_OPTIONS.h: remove PACKAGES_CONFIG.h and use a more standard |
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version (closer to model/incCPP_OPTIONS.h). |
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o model/src: |
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- remove parameter "useOldFreezing" from PARAMS.h and push it to the |
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retired list of parameters (routine FREEZE has been replace by surface |
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freezing (10.yrs ago) and by pkg/frazil (interior freezing). |
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o pkg/gmredi: |
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- add option (GM_CALC_TRANSP_FROM_VEL) to compute transport directly from |
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velocity (same scheme but affects machine truncation) for GM_AdvForm. |
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- update output of FWD experiments: front_relax.bvp, |
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global_ocean.90x40x15.dwnslp, global_ocean.cs32x15 and ideal_2D_oce. |
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checkpoint64q (2013/11/17) |
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o verification: |
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- generate new output on baudelaire (gfortran, -ieee) for OpenAD experiments |
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tutorial_global_oce_biogeo and global_ocean.90x40x15. |
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- generate new output (growth & melt) for seaice_itd experiment after |
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updating the input pickup_seaice files (previously wrong). |
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o pkg/cost: |
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- define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL |
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(instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads: |
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o this fixes global-sum value if multi-threads (since GLOBAL_SUM_TILE_RL |
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cannot be applied to var in common block). |
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o allows to get results independent of tile-per-proc setting (if using |
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slower GLOBAL_SUM_SEND_RECV option). |
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- update accordingly: seaice_cost_final.F, shelfice_cost_final.F, |
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thsice_cost_final.F and ecco_cost_final.F (this one affects lab_sea |
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forward gradients: update output). |
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- update */code_oad/externalDummies.F by adding dummy GLOBAL_SUM_TILE_RL |
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S/R and, for most exp., also comment out GLOBAL_SUM_R8. |
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o pkg/mom_common: |
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- move to pkg/mom_common and model/src (previously in tutorial_deep_convection |
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code) 2nd version of isotropic 3-D Smagorinsky code interface: strain and |
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viscosity are locally declared in dynmics.F and pass as argument to CALC_GW; |
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ensure that all field value that are used are set. |
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o tutorial_deep_convection (smag3d): |
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- add missing scaling in mom_calc_smag_3d.F; |
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- set smag3D_coeff in input.smag3d such that results do not change. |
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o pkg/dic: |
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- change dic_cost.F to compute cost on each tile first and then apply |
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GLOBAL_SUM_TILE_RL: this affects forward gradient of AD experiments |
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tutorial_dic_adjoffline & tutorial_global_oce_biogeo; update output. |
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- remove kLev argument and use GLOBAL_SUM_TILE_RL in tracer_meanarea. |
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o eesupp/src & pkg/mdsio: |
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- remove gather/scatter_vector.F (from eesupp) and mdsio_read/writevector.F |
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(from pkg/mdsio) since they are no longer used for tape IO. |
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- move simple C subroutine "setdir.c" from pkg/compon_communic to eesupp/src |
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(+ keep a copy in pkg/atm_ocn_coupler). |
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o verification/isomip: |
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- split domain in 8 squared tiles (instead of just 2) for FWD, AD & OAD tests. |
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o tools/build_options: |
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- optfile linux_amd64_ifort11, fast (no ieee) case: |
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to get a working restart for all experiments, add "-fp-model source" |
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to FOPTIM (also remove "-opt-streaming-stores auto" <- this is the default). |
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checkpoint64p (2013/10/20) |
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o pkg/autodiff: |
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- adread_adwrite.F: when type and length do not match ALLOW_AUTODIFF_WHTAPEIO |
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criteria, return to simple (default) tape IO format. |
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o pkg/mdsio (+ eesupp/src): |
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- rewrite/simplify tape-IO S/R (new S/R MDS_READ/WRITE_TAPE replace |
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previous MDSREAD/WRITEVECTOR) with 2 array argument from each type (R4/R8); |
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- fix globalFile and singleCpuIO options using simpler global mapping. |
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- new pairs of scatter/gather vector S/R (one for each type, generated from |
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template) corresponding to simpler global mapping. |
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- adread_write.F: switch to new S/R (but leave old calls commented) and write |
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to globalFile when parameter globalFiles is set to True. |
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- switch on useSingleCpuIO in AD experiments: global_ocean.90x40x15 & isomip. |
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o pkg/autodiff: |
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- adread_adwrite.F: add a hack for RS arrays (when RS=real*4); |
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with ALLOW_AUTODIFF_WHTAPEIO defined, since corresponding (real*4) is |
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missing, just add a STOP if array type do not match. |
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o pkg/exf: |
o pkg/exf: |
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- to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice: |
- to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice: |
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rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION |
rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION |
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