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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/exf: |
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- to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice: |
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rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION |
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and rename array obsSIce to exf_iceFraction. |
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o tutorial_deep_convection: |
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- add 1rst version of isotropic 3-D Smagorinsky code (from Louis-Philippe), |
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for now all in this exp. code dir. |
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- add secondary test using Smag-3D viscosity (keep very low backgroud visc for |
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testing) and flux-limter advection scheme for Temp. (no explicit diffusion). |
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o eesupp/src: |
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- added SINGLE_DISK_IO option because reading of parameter files on |
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very large number of processors did not work with existing set-up |
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checkpoint64o (2013/09/25) |
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o pkg/atm_phys & atm_compon_interf: |
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- allows for coupling of gray-atmosphere (atm_phys) with ocean. |
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o tools/build_options: |
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- switch from "-fPIC" to "-mcmodel=medium" in optfiles: linux_amd64_gfortran |
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& linux_amd64_ifort11 and in linux_amd64_g77 & linux_amd64_open64 also |
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remove CPP setting (was identical to genmake2 default). |
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o pkg/gmredi & model/src: Some updating and work done on the residual model. |
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- created new file model/src/calc_eddy_stress.F to calculate the eddy stress. |
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- fixed up the calculation of the eddy stress and how it is added to the |
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external forcing via taueddy_external_forcing.F |
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- at the moment, it is very experimental and only works with the variable eddy |
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diffusivity calculated in gmredi_k3d.F |
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o pkg/seaice/seaice_check.F: add a check to catch the case of specifying |
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lw/swfluxfile instead of lw/swdownfile in data.exf together with pkg/seaice |
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o testreport (& tools/do_tst_2+2): |
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- for MPI test, set default COMMAND to 'mpirun -v -np TR_NPROC ./{executable}' |
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o tools/build_options: linux_amd64_gfortran & linux_amd64_ifort11: |
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- remove CPP='cpp -traditional -P' (this is genmake2 default) |
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- add switch (for big setups) to use 'medium' memory-model (but leave it |
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commented out for now). Note: needed with FC 19 to compile big setups. |
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o pkg/atm_compon_interf: |
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- regroup per field origin (model & pkgs) the coupling storage routines |
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(which accumalate in time each coupling field) |
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- move bi,bj loops inside atm_store_my_data.F and store also wind-stress; |
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update accordingly + simplify aim_do_physics.F |
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checkpoint64n (2013/08/26) |
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o pkg/bbl: |
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- update formulation to reduce dispersion of tracer properties in bbl |
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- replaced horizontal and vertical transport parameters with velocities |
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- changes results for verification/global_with_exf.yearly |
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o verification/halfpipe_streamice: |
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- change to matrix construction; update both Fwd & AD output. |
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o verification/tutorial_tracer_adjsens: |
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- OpenAD test: switch to vector-invariant momentum since fluxform with |
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rStar causes problems with OpenAD; update output. |
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o tools: |
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- genmake2: define a common prefix for all temp-file names ; move them |
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to local /tmp disk (but would be easy to move them back); |
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- xmakedepend: apply the same switch for temp-files. |
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o pkg/offline: |
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- changes for use with rStar (NLFS): assume that we continue to provide |
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UVELMASS/hFacW_ini & VVELMASS/hFacS_ini (hFacWi,S_ini as written in grid |
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output files) and apply r* scaling at each time-step (function of the time |
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varying Eta field); use normal pickup files (needed for restart with NLFS). |
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o adjoint with OpenAD: |
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- move OpenAD-specific files from verification/OpenAD/code_oad_all to a new |
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package openad. This package has to be compiled for all runs with OpenAD |
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instead of specifying code_oad_all as a modification directory. |
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- link the fortran templates from tools/OAD_support to the build directory |
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for preprocessing to avoid conflicts between different setups compiled |
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simultaneously and simplify cleanup. |
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o pkg/exf: |
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- in exf_getforcing.F: comment out most of the EXCH calls (fields used by |
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main model or other pkgs are exchanged in EXF_MAPFIELDS). |
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o model/src: |
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- do_stagger_fields_exchanges.F: skip EXCH calls when using pkg/offline |
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(similar to do_fields_blocking_exchanges.F). |
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o tools/genmake2: |
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- remove TAF output src code just before calling staf (when not doing a fresh |
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built, will stop if things go wrong with staf). |
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- fix target "adobj" (left from TAF version-2 transition) |
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o pkg/diagnostics: |
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- add a parameter to track the status of pkg/diagnostics activation; |
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this replace/extend the use of logical param "settingDiags" (to check |
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when adding diag to the list) to also check any DIAGNOSTICS_[]FILL* call. |
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New S/R to print error message and stop when pkgStatus is not right. |
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- to try: add a warning when "data.diagnostics" exist but useDiagnostics=F. |
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checkpoint64m (2013/08/13) |
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o model/inc: |
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- move FCORI_MACROS.h from PARAMS(_MACROS).h to GRID_MACROS.h (left from |
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8 yrs ago modif when Coriolis arrays were moved from PARAMS.h to GRID.h) |
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o pkg/kpp & aim_v23: |
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- only call DIAGNOSTICS_FILL when useDiagnostics=TRUE. |
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o pkg/seaice: |
o pkg/seaice: |
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- restore (last time on 2011/12/24) ability to compile pkg/seaice with |
- restore (last time on 2011/12/24) ability to compile pkg/seaice with |
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undefined pkg/exf ALLOW_ATM_TEMP or ALLOW_RUNOFF CPP-options. |
undefined pkg/exf ALLOW_ATM_TEMP or ALLOW_RUNOFF CPP-options. |
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- only call DIAGNOSTICS_FILL when useDiagnostics=T. |
- only call DIAGNOSTICS_FILL when useDiagnostics=TRUE. |
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o eesupp/src: |
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- fix check for overlap-size argument (myOLn.GT.MAX_OLY_EXCH) |
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in exch1_rx[_ad].template (thanks to Francois Lefeuvre report). |
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o switch to TAF version-2: |
o switch to TAF version-2: |
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- add flow directives to "freeze" naming convention for ad-routines that |
- add flow directives to "freeze" naming convention for ad-routines that |
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are used in I/O routines of adjoint state and associated common blocks |
are used in I/O routines of adjoint state and associated common blocks |
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