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revision 1.1726 by jmc, Tue Aug 28 21:13:08 2012 UTC revision 1.1734 by jmc, Sat Sep 8 20:32:11 2012 UTC
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6    
7  o tools/genmake2:  o tools/genmake2:
8      - add similar dependences for target EXE_AD & EXE_FTL as we have for EXECUTABLE
9        (added by Alistair in version 1.51 for building without make depend);
10      - remove Header files list (H_SRC_FILES) from the dependence of targets
11         ad_input_code.f & ftl_input_code.f (not clear why it was added in the first
12        place in version 1.23): this save going through staf when unrelated header
13        file has been modified.
14       Note: for an intermediate target (e.g., ad_input_code.f or adtaf) without
15        "make depend" step, still need to do "make links" before "make adtaf".
16    o eesupp/src (+ few pkg src files) & genmake2:
17      - finish to remove ALWAYS_USE_MPI in source code that TAF does not see;
18      - no longer set ALWAYS_USE_MPI in Makefile (was done by genmake2).
19      - improve genmake2 checking for ALLOW_${PKG} in CPP_OPTIONS.h files (distinguish
20         upper/lower case ; account for space between "#" and undef/define)
21    o pkg/flt (with exch2):
22      - cleaning: fix so that it compiles; move remaining MPI calls out of flt_exch2.F;
23      - simplify threads synchronisation; fix (many issues) multi-threaded with MPI.
24    
25    checkpoint63s (2012/09/05)
26    o pkg/ecco:
27      - remove #ifdef ALLOW_SMOOTH_CORREL3D brackets.
28      - add more relevant #ifdef ALLOW_SMOOTH ones.
29      - sort out useAtmWind, useSMOOTH, ctrlSmoothCorrel2D.
30    o pkg/ctrl:
31      - CTRL_OPTIONS.h : document CPPs related to smoothing; ALLOW_SMOOTH_CORREL2D/3D,
32        ALLOW_CTRL_SMOOTH, ALLOW_SMOOTH_CTRL2D, ALLOW_SMOOTH_CTRL3D.
33      - ctrl.h : document run time params doInitXX, doMainPack, doMainUnpack, doPackDiag,
34        doSinglePrecTapelev (audodiff param!), ctrlSmoothCorrel2D (new) and
35        ctrlSmoothCorrel3D (new).
36        The added ctrlSmoothCorrel2D/3D replace the old ALLOW_SMOOTH_CORREL2D/3D CPP.
37      - ctrl_readparms.F : initialise ctrlSmoothCorrel2D/3D and read from namelist.
38      - ctrl_init.F ctrl_pack.F ctrl_unpack.F : switch off ustress/vstress
39        controls when useAtmWind, and vice versa.
40      - ctrl_map_ini_ecco.F : UVEL0, VVEL0, edtaux, edtauy cannot be smoothed as tracers.
41      - ctrl_get_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL2D with
42          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel2D, IF useSMOOTH.
43      - ctrl_map_ini_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL3D with
44          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel3D, IF useSMOOTH.
45      - ctrl_set_pack_xy[z].F, ctrl_set_unpack_xy[z].F:
46        replace ALLOW_SMOOTH_CORREL2D/3D brackets with ctrlSmoothCorrel2D/3D.
47    o pkg/smooth:
48      - remove un-necessary includes.
49      - remove ALLOW_SMOOTH*D and ALLOW_SMOOTH_CORREL*D brakets.
50        Those CPP options were never defined, and not necessary.
51    o model/src:
52      - fix CPP brackets in ini_mixing.F (GM_background_K belongs to gmredi).
53      - standard treatment of useSMOOTH.
54    o pkg/autodiff:
55      - add LOGICAL useGGL90inAdMode, useGGL90inFwdMode, useSALT_PLUMEinAdMode,
56        useSALT_PLUMEInFwdMode allowing to switch off ggl90 and salt_plume adjoint.
57    o pkg/exch2:
58      - add "if usingMPI" where it was missing (in exch2_rx?_cube*.template)
59        + start to remove ALWAYS_USE_MPI in source code that TAF does not see.
60      - make new S/R W2_MAP_PROCS out of w2_eeboot.F to setup exch2 CommonFlag
61        and tiles to process mapping.
62      - re-arrange 3 header files (W2_EXCH2_PARAMS.h, _BUFFER.h & _TOPOLOGY.h)
63        moving /EXCH2_FILLVAL_RX/ & /W2_EXCH2_COMMFLAG/ to W2_EXCH2_TOPOLOGY.h;
64        rename "exch2_tProc" to "W2_tileProc" and move seting of e2FillValue_RX
65        from w2_eeboot.F to w2_readparms.F.
66    o eesupp/src:
67      - set exchNeedsMemsync & exchUsesBarrier according to "usingMPI" (instead of
68        ALWAYS_USE_MPI) + moved from ini_communication_patterns.F to eeset_parms.F;
69        also move setting of exchCollectStatistics from exch_init.F to eeset_parms.F
70      - in eedie.F and all_proc_die.F, always call MPI_FINALIZE when ALLOW_USE_MPI
71        is defined (remove condition on usingMPI) to match cases where MPI_INIT
72        has been called.
73      - fix bug I put in previous modif of exch_sm_3d_rx.template (not much used);
74      - change default (non-MPI) value of myPid (from 1 to 0) to match MPI settings
75        (so that on 1 proc, get same myPid independently of usingMPI)
76      - add a stop if multi-procs but usingMPI=F ; stop also if usingMPI=T and
77        useCubedSphereExchange with EXCH-1 (safer).
78      - add "if usingMPI" where it was missing (+ start to remove ALWAYS_USE_MPI).
79    o pkg/ggl90:
80      - fix bug in filling corner mask array "mskCor" (FILL_CS_CORNER_TR_RL call)
81        used in ALLOW_GGL90_SMOOTH code.
82    o pkg/flt:
83      - fix typo in FLT_WITHOUT_Y_PERIODICITY (the effect was to ignore stopping
84        floats at the Southern end of the domain).
85    o eesupp/inc:
86      - add a list of CPP-options which can be set by Makefile (DEF_IN_MAKEFILE.h);
87        but not used (and not to be used) anywhere, just for documentation.
88    o pkg/autodiff, exf, ptracers & seaice (AD & TL output):
89      - comment out the very nasty "writeBinaryPrec = writeStatePrec" line, since:
90        a) can damage previously written records in any other multi-record files.
91        b) if needed, can easily do it cleanly, by calling S/R WRITE_REC_3D_RL/S.
92    o tools/genmake2:
93    - define variable MAKE within Makefile and use it in place of 'make';    - define variable MAKE within Makefile and use it in place of 'make';
94    - update AD_CONFIG.h (if needed) before building any of the executable    - update AD_CONFIG.h (if needed) before building any of the executable
95      (forward, adjoint or tangent-lin); this involves a 2nd invocation of make;      (forward, adjoint or tangent-lin); this involves a 2nd invocation of make;
96      and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h;      and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h;
97    - always print usual warning comment 'this file is automatically generated'    - always print usual warning comment 'this file is automatically generated'
98      from script convert_cpp_cmd2defines (+ remove this warning from genmake2).      from script convert_cpp_cmd2defines (+ remove this warning from genmake2).
99    o pkg/cheapaml:
100      - updated to correspond to the code used in accepted paper (Nico Wienders).
101  o pkg/exf:  o pkg/exf:
102      added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch.      added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch.
103      ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F)      ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F)
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