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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint48c_post |
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Modifications in treatment of initial flux forcing controls |
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to avoid extra storing of flux fields. |
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checkpoint48c_pre |
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o Added tidal_basin_2d experiment (currently 1D!) |
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o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
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checkpoint48b_post |
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o r* coordinate added in #ifdef NONLIN_FRSURF block. |
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(modification to pressure gradient not yet implemented) |
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o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
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(for U & V) that are used for vertical advection of momentum. |
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checkpoint48a_post |
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o In preparation for r*, use temp. array to compute vertical transport |
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in flux-form momentum pkg. => change results of few test-exp. |
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Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
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lab_sea, natl_box & plume_on_slope |
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checkpoint48 |
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o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
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checkpoint47j_post |
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o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
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o moved adexch from forward_step to addummy_in_stepping |
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o added exch in ctrl_map_... |
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o aveFreq.=0. at end of cost_final to avoid overwrite in |
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reverse checkpointing loop |
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o Yet more changes in gmredi: |
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* adgmredi_calc_tensor |
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avoiding all recomputation of gmredi_slope_limit |
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* adgmredi_x/y/rtransport |
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added flag for excessive storing to avoid recomp. of |
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u/v/rtans, dTdx/y/z |
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-> this is not really necessary and very memory-consuming |
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* adgmredi_slope_psi: |
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consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff |
| 44 |
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* gmredi_slope_limit |
| 45 |
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re-activated full calculation of taperfct for case 'ac02' |
| 46 |
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o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
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checkpoint47i_post |
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o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
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o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
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default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
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o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) |
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o gmredi: fix few bugs. |
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checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) |
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This will be a good checkpoint to plug into the ecco-branch. |
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o few modif.'s to get latest version adjointed |
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(mainly kick out code in ini_linear_phisurf) |
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o modif's to run adjoint with exactConserv |
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o case GM_BOLUS_ADVEC should be cleaned |
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S/R gmredi_slope_psi should be cleaned |
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o verification/carbon now has exactConserv=.TRUE. |
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checkpoint47g_post |
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o time-average AIM output: becomes independent from statvars time-average |
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(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
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o After TAF bug fix: |
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Tested adjoint of gmredi package. |
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Tests were done with checkpoint47 rather than with latest |
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checkpoint47f_post since the latter is broken for the adjoint |
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verification/carbon/ contains both ADM and TLM gradient checks. |
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Here they are, before they get changed/lost/stolen. |
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Mostly modif.'s to fix numerical sensitivities. |
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Gradient checks OK for |
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- GM_taper_scheme: |
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* clipping |
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* ac02 |
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* linear |
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* glw91 |
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* dm95 |
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* ldd97 |
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- GMREDI_OPTIONS: |
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* GM_VISBECK_VARIABLE_K |
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* GM_NON_UNITY_DIAGONAL |
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* GM_EXTRA_DIAGONAL |
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* GM_BOLUS_ADVEC |
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in conjunction with data.gmredi parameters to be checked in |
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in a few minutes under verification/carbon/code/ |
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checkpoint47f_post |
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Merging from release1_p10: |
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o modifications for using pkg/exf with pkg/seaice |
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- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
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and SEAICE_EXTERNAL_FLUXES |
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- pkg/exf CPP options EXF_READ_EVAP and |
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EXF_NO_BULK_COMPUTATIONS |
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- usage examples are Experiments 8 and 9 in |
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verification/lab_sea/README |
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- verification/lab_sea default experiment now uses |
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pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
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checkpoint47e_post |
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o created a tag prior to creating a branch |
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checkpoint47d_post |
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o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
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at the bottom boundary had an erroneous half slip boundary condition |
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o added bottom drag and no slip boundary condition capabilities to |
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oceanic pressure coordinates code |
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o added new verification experiment global_ocean_pressure, this experiment is |
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also described in the tutorial section of the manual |
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checkpoint47d_pre |
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checkpoint47c_post |
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o Added a verification experiment for a global cubed-sphere ocean run |
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- verification/global_ocean.cubed32x32x30 |
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- uses pkg/therm_seaice and pkg/bulk_forcing |
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o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
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o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
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when using P-coordinate; only implemented for atmospheric config. |
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o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
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NOTES: requires option NONLIN_FRSURF to be "#define". |
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o update advect_xz/results/output.txt (left from checkpoint44g_post) |
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checkpoint47b_post |
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Merging from release1_p9: |
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o pkg/seaice |
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- removed GOTO's and added taf directives |
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- double precision constants to reduce the g77 (Linux) |
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to F77 (SGI) differences reported in release1_p8 |
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o tools/genmake |
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- added SGI options |
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o verification/testscript |
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- updated to that of checkpoint47a_post |
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o verification/global_ocean.90x40x15/input/eedata |
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- modified for SGI f77 compatibility |
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o verification/lab_sea |
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- added description of sea-ice model |
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- added missing matlab routines |
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- added test of thermodynamics parallelization |
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checkpoint47a_post |
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o new pkg: aim_v23 |
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= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
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for now, keep the same surface forcing as before. |
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- Part-Cell implemented into AIM; check that Heat & Water are conserved |
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- aim.5l_cs: use new aim pkg (run 10yr & get better results than before) |
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- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
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o add diagnostic of surface correction term in monitor output |
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o bulk_force and therm_seaice |
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- Two packages: bulk_force (Bulk forcing) |
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and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
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- Earlier integration from Stephaine Dutkiewicz |
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and Patrick Heimbach. |
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- Two ifdef statements for compile time, |
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ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
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checkpoint47 |
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differentiable version of checkpoint46n_post |
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o bug fix in quasihydrostaticterms |
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o * "clean" adjoint code (in terms of extensive recomputations) |
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can now be obtained for all GMREDI options (i.e. for |
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- GM_VISBECK_VARIABLE_K |
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- GM_NON_UNITY_DIAGONAL |
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- GM_EXTRA_DIAGONAL |
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- GM_BOLUS_ADVEC ) |
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* However, wrong gradient check problem remains unsolved. |
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* New CPP options have been introduced for different |
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tapering schemes |
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o external_fields_load now part of differentiation list |
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o pressure needs multiple storing; |
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would be nice to have store_pressure at beginning or |
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end of forward_step, e.g. by having phiHyd global (5-dim.) |
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(NB: pressure is needed for certain cases in find_rho, |
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which is also invoked through convective_adjustment). |
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o recomputations in find_rho for cases |
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'JMD95'/'UNESCO' or 'MDJWF' are OK. |
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o #define ATMOSPHERIC_LOADING should be differentiable |
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o ini_forcing shifted to begining of initialise_varia |
| 182 |
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o Incorporating QNVS line search routines into MITgcm |
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(this is separate code, and therefore not under pkg) |
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lsopt/, optim/ |
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o Updated verification/carbon/ |
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- #define GM_VISBECK_VARIABLE_K |
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- GM_taper_scheme = 'ldd97' |
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checkpoint46n_post |
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Merging from release1_p8: |
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o verification/natl_box: |
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updating new external_fields_load routine |
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o New package: pkg/seaice |
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Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
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The sea-ice code is based on Hibler (1979-1980). |
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Two sea-ice dynamic solvers, ADI and LSR, are included. |
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In addition to computing prognostic sea-ice variables and diagnosing |
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the forcing/external data fields that drive the ocean model, |
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SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
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The implied surface heat flux is then stored in variable |
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surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
| 202 |
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kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
| 203 |
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non-local transport term. Because this call precedes model |
| 204 |
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thermodynamics, temperature under sea-ice may not be "exactly" at |
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the freezing point by the time theta is dumped or time-averaged. |
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N.B.: fairly large differences in accuracy occur across |
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different platforms/compilers; comparison between |
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g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
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generated output gives: |
| 210 |
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T S U V |
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C D M c m s m s m s m s |
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n p a R g m m e . m m e . m m e . m m e . |
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f n k u 2 i a a d i a a d i a a d i a a d |
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g d e n d n x n . n x n . n x n . n x n . |
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Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
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o GAD: |
| 218 |
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- generated new common blocks to account for call of |
| 219 |
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same gad routines with differing traceridentities |
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(needed to modify tracerIdentity indices in GAD.h) |
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- generated separate common blocks for case useCubedSphereExchange |
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(Department of Futurology) |
| 223 |
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- parameter lists to gmredi_?transport: added tracerIdentity |
| 224 |
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- added new key indices to tamc.h |
| 225 |
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o external_fields_load: |
| 226 |
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- added this routine to TAF list |
| 227 |
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- needed to make some common blocks global and additional storing |
| 228 |
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along the same lines as exf package (checkpoint_lev?_directives.h) |
| 229 |
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o exf: |
| 230 |
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updated external forcing package |
| 231 |
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- bug fixes carried over from ecco-branch |
| 232 |
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(missing OBCS_OPTIONS.h in two routines) |
| 233 |
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- enable easy to use "no forcing". |
| 234 |
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- added exf I/O for atmospheric loading |
| 235 |
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- added exf I/O for runoff data |
| 236 |
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- transfered scaling between exf <-> MITgcm to exf namelist |
| 237 |
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o Adding new verification experiment global_with_exf. |
| 238 |
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This verification experiment is almost identical to the |
| 239 |
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global_ocean.90x40x15 experiment, except that it uses |
| 240 |
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the exf (and cal) package instead of the |
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external_fields_load routine (cf README file). |
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checkpoint46m_post |
| 244 |
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o modified testscript to return -- when there are no lines of "%MON" output |
| 245 |
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o added new flag "quasiHydrostatic" for QH mode |
| 246 |
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and new routine quasihydrostaticterms() |
| 247 |
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o added 2*Omega*Cos(phi)*W to u equations (non-hydrostatic Coriolis term) |
| 248 |
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New routine: mom_u_coriolis_nh() |
| 249 |
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o fixed sign of non-hydrostatic metric terms in u and v equations. |
| 250 |
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Depend on correct sign of gravitySign. |
| 251 |
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o added work.pc* to .cvsignore in aim directories using ifc |
| 252 |
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o introduced flag for controllin non-hydrostatic metric terms |
| 253 |
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o removed gravitySign from PARM04 |
| 254 |
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o switched to g77/ifc from pgf77 in aim experiments |
| 255 |
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| 256 |
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checkpoint46l_post |
| 257 |
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o made convective adjustment work with pressure coordinates: |
| 258 |
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- changed the direction of k-loop in convective_adjustment.F for the |
| 259 |
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case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
| 260 |
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- adjusted the reference pressure k-index in convective_adjustment.F |
| 261 |
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- adjusted the convection condition in convect.F (in analogy to |
| 262 |
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calc_ivdc.F) |
| 263 |
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- convective_adjustment no longer computes anything on the halos |
| 264 |
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- removed the warnings about negative salinity from find_rho.F and |
| 265 |
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find_alpha.F; instead the new routine look_for_neg_salinity, called |
| 266 |
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at the beginning of find_rho, find_alpha, and find_beta, does a |
| 267 |
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check of the entire slice, if CPP-option |
| 268 |
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CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
| 269 |
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checkpoint46l_pre |
| 270 |
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|
| 271 |
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checkpoint46k_post |
| 272 |
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o fixed the verification/global_ocean.90x40x15 experiment: |
| 273 |
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- new bathymetry (the world according to A., JMC, and M.) |
| 274 |
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- new initial fields and forcing fields (*.bin files) |
| 275 |
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- new POLY3.COEFFS (for the next release one should switch to a full |
| 276 |
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equation of state: JMD95P or MDJWF) |
| 277 |
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- fixed several errors and redundancies in the data file |
| 278 |
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- experiment uses looped cells |
| 279 |
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- added matlab directory with diagnostic scripts for plotting of output |
| 280 |
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o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
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- read AIM physics parameters from a file (data.aimphys) |
- read AIM physics parameters from a file (data.aimphys) |
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- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
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