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revision 1.575 by jmc, Mon Oct 24 18:20:11 2005 UTC revision 1.599 by jmc, Thu Jan 12 16:49:07 2006 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint58
8    o add "--embed-source" option to genmake2 which, when the supporting
9      tools can be compiled (as determined by genmake2) will turn on the
10      embed_files package which then embeds the entire MITgcm source code
11      (*.[fFhc] + Makefile) used for the build within the executable
12      - requested by CNH but off by default
13      - adds a paltry <9MB to the mitgcmuv executable in most cases
14      - only writes the output when useEMBEDSRC in eedata is true
15    o clean up 3-dim. relaxation codes:
16      * Fix I/O inconsistency in pkg/rbcs: replace precFloat32 by readBinaryPrec
17      * Remove 3-dim. relaxation code from pkg/exf (now use only pkg/rbcs)
18      * Thanks to Tom Haine for testing!
19    
20    checkpoint57z_post
21    o make CG3D solver compatible with Free-surface at k > 1 (p-coordinate):
22      affects output (@ truncation level) of exp. plume_on_slope ; updated.
23    o fix the pickup behavior for obcs in combination with ptracers
24    o fix a bug in ptracers_external_fields_load
25    o no AB-2 at the first iteration for Gw (consistent with Gu,Gv,Gt,Gs ...)
26      affects results of NH experiments (but all our NH tests have Gw[it=1]==0 !!)
27    o transfered surface NH pressure to eta field (if exactConserv).
28    o gmredi: fix bugs in slope tapering ldd97 (depthZ had the wrong sign)
29         and update lab_sea output.txt file.
30    o completing 3-dim. relaxation code: additional term
31         1/tau*( theta(i,j,k) - thetaStar(i,j,k) )
32      in S/R EXTERNAL_FORCING_T (file external_forcing.F)
33      * At compile time, in "EXF_OPTIONS.h" set
34          #define  ALLOW_CLIMTEMP_RELAXATION
35          #define  ALLOW_CLIMSALT_RELAXATION
36      * At runtime in "data", under &PARM03 set (e.g., units in seconds)
37          tauThetaClimRelax3Dim = 15552000.0,
38          tauSaltClimRelax3Dim  = 15552000.0,
39      * 3 cases:
40          1) Use a constant-in-time 3-dim. field
41          2) Provide 12 3-dim. fields corresponding to Jan., ... , Dec.
42          3) Real-time relax. to time-evolving prescribed field
43    o Adding Laplacian-type smoothness constraint on
44      initial and boundary (forcing) controls (ic, bc)
45      * enable at compile-time via
46        ALLOW_SMOOTH_IC_COST_CONTRIBUTION, ALLOW_SMOOTH_BC_COST_CONTRIBUTION
47      * enable at run-time via mult_smooth_ic = 1, mult_smooth_bc = 1
48      * Absolute scale somewhat unclear so far
49      * no area weighting was included since no other cost term does so far
50    
51    checkpoint57y_post
52    First step for a NLFS adjoint
53    o initially suppress rStar (new flag DISABLE_RSTAR_CODE)
54    o new init. routines for calc_r_star, calc_surf_dr
55    o still need to deal with ini_masks_etc
56    o testreport seemed happy
57    checkpoint57y_pre
58    
59    o obcs: always reset wVel & eta (to zero or prescribe it) at the OBs.
60    o add new package rbcs (for relaxing ptracers at boundaries/depth/surface etc)
61    o add new offset feature to offline pkg (plus minor cleanup)
62    o cfc fixes for final year of integration
63    o clean up GCHEM_OPTIONS.h/DIC_OPTIONS.h (all options should
64      be in GCHEM_OPTIONS).
65    
66    checkpoint57x_post
67    o fix testreport Pb in multiple test experiment.
68    o cleanup our namelist syntax in verification:
69      - make it more F95 standards compliant (some work still needed)
70      - allows the vast majority of our tests to work with gfortran
71    o Non-Hydrostatic:
72     - put all NH variables (formerly in DYNVARS.h & GW.h) in NH_VARS.h
73     - fix exchange calls for CS-grid using the new EXCH_S3D_RL.
74    o Allow to apply AB on T,S rather than on AB(gT,gS):
75     - implemented within #ifdef ALLOW_ADAMSBASHFORTH_3
76     - use the same arrays (gtNm,gsNm) to hold tracer field at previous
77       time-steps (if AB(T,S)) and tendencies (if AB(gT,gS)).
78     - need a "clever" read_pickup to restart from the other AB formulation
79    o move local commom bloc /GlobalLo/ (used for singleCpuIO) in EESUPPORT.h
80    o remove some unused variables (reduces number of compiler warnings)
81    o adjoint
82      * Disable useVariableViscosity for adjoint for time being
83        (there are a number of extensive recomputations)
84      * Initialize certain variables needed for adjoint
85    
86    checkpoint57w_post
87    o pkg/mdsio: use MAX_LEN_FNAM (instead of hard coded 80) for file-names
88                 fix the singleCpuIO RS version of MDSWRITEFIELD
89       and add a WARNING if using globalFiles=T with multi-processors.
90  o write grid-file(s) in only one format (MDS or MNC): default=MNC (if  o write grid-file(s) in only one format (MDS or MNC): default=MNC (if
91    using MNC); can force MDS output by setting writegrid_mnc=F in data.mnc    using MNC); can force MDS output by setting writegrid_mnc=F in data.mnc
92  o tracer advection scheme:  o tracer advection scheme:
93    add DST-2 (=Lax-Wendroff) & 1rst order upwind schemes (the way to get    add DST-2 (=Lax-Wendroff) & 1rst order upwind schemes (the way to get
94     those 2 schemes before, changing GAD_FLUX_LIMITER.h + to recompile,     those 2 schemes before, changing GAD_FLUX_LIMITER.h + to recompile,
95     was not very convenient).     was not very convenient).

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