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revision 1.469 by heimbach, Sun Apr 3 16:11:00 2005 UTC revision 1.508 by heimbach, Thu Jun 30 19:55:41 2005 UTC
# Line 1  Line 1 
1  $Header$  $Header$
2    $Name$
3    
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint57j_post
8    o exf
9      * bug fix in exf_bulkformulae for psimh (spotted by Eliyahu Biton):
10        Bracket missing in eqn. for psimh (eqn. 7 of Large & Pond, 1982);
11        terms -2*ATAN(x) + pi/2 were added to both stable and unstable case.
12      * extended diagnostics output
13        - now includes all EXF variables
14        - hs, hl moved to common block
15        - separate S/R for diagnostics, called after ctrl vector is added
16        - name changed for EXFsw -> EXFswnet, EXFlw -> EXFlwnet
17        - EXFqnet contains true Qnet (i.e. includes qsw)
18      * updated verif. lab_sea, global_with_exf
19      * Rearranging hflux (exf_mapfields -> exf_getforcing)
20        to ensure that diagnostics sees a true EXFqnet
21    o add matlab scripts for CS-grid vectors (in utils/cs_grid)
22    o diagnostics pkg: change pointers so that 1 diagnostic can be used
23      several times with different frequencies.
24    o mnc-ify the thsice package as requested by Daniel Enderton
25      - the monitor--MNC output needs work
26      - many attributes need to be added (most are currently blank)
27    o mnc-ify theaim_v23 package as requested by Daniel Enderton
28      - many attributes need to be added (most are currently blank)
29    o remove "groundAtK1" & "rkFac" (replaced by usingPCoords & -rkSign)
30    o add Sadourny like discretization to the 4th.O vorticity advection scheme
31    o fix bug in rStar code (calc_r_star.F) when used with topo/bathy.
32      update output.txt from: aim.5l_cs (& .thSI), cpl_aim+ocn,
33         fizhi-gridalt-hs and global_ocean.cs32x15 (& .thsice).
34    o fix few little things to avoid floating error with -ftrapuv (ifort v9)
35     (ini_spherical_polar_grid.F, calc_r_star.F, monitor/mon_surfcor.F)
36    
37    checkpoint57i_post
38    o Diagnostics package was changed: diagnostic allocation is now deactivated
39      by setting an empty file name in the namelist (used to be by setting 0 frequency)
40    o momentum advection (VI form) options: activate 4th.O vorticity Coriolis ;
41      add 1rst Order upwind vertical Shear.
42    o add a quick fix for A/B checkpointing in OFFLINE mode
43    o add IGNORE_TIME define and -ignore_time option to genmake2 as an
44      end-run around the C/Fortran linking horror in eesup/src/timers.F
45    o added pkg/runclock: allows user to terminate run based on wall clock
46    o added non-hydrostatic scaling parameter: nh_am2
47    o pkg/my82: futile attempt to make results compiler-independent by adding
48      some "_d 0", etc. no effect.
49    o for mnc output, fill the 'T' coordinate var with myTime and create a
50      separate 'iter' variable for iteration count
51    o pkg/diagnostics:
52      add new capability: output of Global/Regional & per-level statistics ;
53      tested against monitor output (including land & thSIce) on various exp.
54    o make seaice-pkg I/O type flags (MNC/MDS) more standard.
55    
56    checkpoint57h_done
57      tag after changing user customized files (DIAGNOSTICS_SIZE.h,
58      data.diagnostics, data.gchem, data.ptracers) is done.
59    
60    o pkg/diagnostics: prepare for Global/Regional statistics.
61      add 2nd namelist in data.diagnostics and update DIAGNOSTICS_SIZE.h
62    o remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE
63      and rename it: DIFFERENT_MULTIPLE
64    
65    checkpoint57h_post
66    o move tIter0 from data.gchem to PTRACERS_Iter0 in data.ptracers
67    o pkg/diagnostics: change output frequency, now in seconds (instead
68      of Nb of iterations). This requires to change data.diagnostics.
69    checkpoint57h_pre
70    
71    o in mnc, let the user create the output dir if both mnc_outdir_date
72      and mnc_outdir_num are false
73    o add fflags() to pkg/diagnostics which allows one to specify, on a
74      per-file basis, the file precision [default behavior is unchanged]
75    o added diagnostics to pkg/kpp, including computation of mixed layer
76      depth based on a temperature/density criterion
77    o updated verification/natl_box to test the new pkg/kpp diagnostics
78    o bugs fixed (with useAbsVorticity=T & with useJamartMomAdv=T)
79    o test AB-3 code with 4th.Order advection scheme (advect_xy/input.ab3_c4)
80    o fix mnc flags in pkg/seaice so that they are "owned" by seaice,
81      not mnc -- this mistake was found by JMC and is now corrected
82    
83    checkpoint57g_post
84    o add Adams-Bashforth 3rd Order time stepping:
85      - default remains AB-2 (#undef ALLOW_ADAMSBASHFORTH_3)
86      - not yet implemented with NH, CD_Scheme, pTracers, MNC_pickup ...
87    checkpoint57g_pre
88    
89    o make lambda[Theta,Salt]ClimRelax spatially varying
90      (default remains spatially uniform constant based on tau)
91    o added new control variables
92      * init. uVel, vVel, etanN
93      * lambda[Theta,Salt]ClimRelax
94    o separate masks used for ctrl_pack/unpack 'from write_grid' output
95      (suggested by G. Forget)
96    
97    checkpoint57f_post
98    o add parameter "baseTime" = model base time = time at iteration zero
99      new function DIFF_BASE_MULTIPLE (replace DIFFERENT_MULTIPLE) to
100      account for baseTime shift
101    o move Coriolis arrays from PARAMS.h to GRID.h
102    checkpoint57f_pre
103    
104  o mnc-ifying the seaice package  o mnc-ifying the seaice package
105  o introduced an alternative length scale calculation for use in the limiting  o introduced an alternative length scale calculation for use in the limiting
106    maximum viscosity (off by default, see mom_vi_hdissip.F for details)    maximum viscosity (off by default, see mom_vi_hdissip.F for details)
# Line 24  o adjoint-related modifications Line 122  o adjoint-related modifications
122    
123  checkpoint57e_post  checkpoint57e_post
124  o Adding eddy stress controls a la Ferreira et al.  o Adding eddy stress controls a la Ferreira et al.
125  checkpoint57e_pre  checkpoint57e_pre (actually was tagged: eckpoint57e_pre)
126    
127  o fizhi pkg: fix AtoC and CtoA when called with same input & output array  o fizhi pkg: fix AtoC and CtoA when called with same input & output array
128    update output.txt of exp. fizhi-gridalt-hs    update output.txt of exp. fizhi-gridalt-hs

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