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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o fix mask Pb in multidimAdvection on CS-grid (still a small Pb with ipass) |
| 7 |
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o fix biharmonic diffusion on CS-grid. |
| 8 |
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o more obcs stuff |
| 9 |
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- added obcs_external_fields_load as an alternative to the EXF-pkg option |
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for reading boundary values. This routine is called from |
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obcs_prescribe_read |
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- updated obcs_check |
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checkpoint55c_post |
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o obcs stuff |
| 16 |
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- new runtime flags useOBCSprescribe, useOBCSbalance |
| 17 |
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- re-arranged obcs_calc |
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- moved exf_getobcs to obcs_prescibe_read |
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obcs_prescibe_read is called after ORLANSKI stuff |
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and independent of it (executable can contain all). |
| 21 |
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- updated obcs_check |
| 22 |
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- added exchanges for U,V,gU,gV for useOBCSprescribe=.TRUE. |
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These may be necessary only if tangential velocities are |
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prescribed at OB, not sure, needs testing. |
| 25 |
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o make the MNC_CW_ADD_VATTR_* subroutines all take scalar arguments |
| 26 |
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which simplifies the calls and passes the ifc check-bounds test |
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checkpoint55b_post |
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o add a 2D scalar, Z location, exchange_2 routine. |
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o EXCH_UV for CS-grid: add one u,v in the corner-halo region, allows |
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to compute vorticity on a wider stencil [e.g., vort3(0,1)&(1,0)] |
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affects advect_cs results (for the wrong reason): update output.txt |
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o use a more standard discretization for biharmonic viscosity ; |
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(original version still available with #define MOM_VI_ORIGINAL_VISCA4 ) |
| 35 |
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affects results of dome set-up: update output.txt |
| 36 |
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o fix gad_advection.F (CubedSphere part), back to version 1.23 |
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o fix bug in mom_vi_del2uv.F (CubedSphere part). |
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checkpoint55a_post |
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o merged code to |
| 41 |
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* prescribe/read time-dependent open boundaries |
| 42 |
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(works in conjunction with exf, cal) |
| 43 |
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* sponge layer code for open boundaries |
| 44 |
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* each boundary N/S/E/W now has its own CPP option |
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(healthy for the adjoint) |
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| 47 |
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checkpoint55 |
| 48 |
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o up-to-date adjoint of previous breaks |
| 49 |
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- natl_box_adjoint: problem for exp 12, 13: cost = 0. needs fix |
| 50 |
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- global_ocean_ebm: adjoint still needs fix (TLM ok) |
| 51 |
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- global_ocean.90x40x15: extended GMREDI_OPTIONS.h |
| 52 |
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- carbon: * remove tr1-related adjoint verification |
| 53 |
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* add ptracer as control variable |
| 54 |
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o remove all tr1-related code (ALLOW_PASSIVE_TRACER) |
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(adjoint stuff still has some tr1 'names', but all use ptracer arrays) |
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checkpoint54f_post |
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o in verification/carbin/ remove experiment related to |
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ALLOW_PASSIVE_TRACER (array tr1 etc) |
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code_ad/ input_ad/ results_ad |
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o add two new packages |
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- ggl90, TKE-model of Gaspar et al. (1990), Blanke+Delecluse (1993) |
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+ subject to optimization (memory) |
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- opps, OPPS (ocean penetrative plume scheme) of Paluszkiewicz+Romea (1997) |
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+ subject to reordering (many GOTOs in the original code) |
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+ so far opps is called for every (i,j) point, and then operates in |
| 68 |
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the vertical; one may want to reorder the scheme in order operate in |
| 69 |
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horizontal slabs at the cost of (a lot of) memory, at least ten new 3D |
| 70 |
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fields) |
| 71 |
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o overhaul of IO so that we now have flags for MDSIO and/or MNC |
| 72 |
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- all verification tests compile and run with linux_ia32_g77 |
| 73 |
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- defaults are compatible with current input files--nothing |
| 74 |
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should change if you were not previously using MNC |
| 75 |
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- MNC output has been added in numerous places (eg. timeave) |
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but there are still a few writes not yet do-able with MNC |
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(this is in progress) |
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- flags now allow for either/or/both use of MDSIO and MNC and |
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documentation will soon follow |
| 80 |
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- numerous small formatting cleanups for ProTeX |
| 81 |
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o add version info (via BUILD_INFO.h) to MNC and stdout |
| 82 |
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checkpoint54e_post |
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o add two new packages |
| 85 |
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- pp81 (Packanowski and Philander, 1981), Richardson number and |
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stratification dependent mixing |
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- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
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- these scheme operate in a similar manner as KPP (without ghat, of |
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course), however there is only one diffusivity that is used for both |
| 90 |
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temperature and salinity (and passive tracers)ç |
| 91 |
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o add offline package |
| 92 |
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o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
| 93 |
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provided by Stephanie Dutkiewicz |
| 94 |
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o genmake2: add ability to search for C compilers and cleanup test output |
| 95 |
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- fixes recent SX-6 problems and should help with others (eg. HP-UX) |
| 96 |
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| 97 |
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checkpoint54d_post |
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o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed |
| 99 |
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o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong, |
| 100 |
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leading to additional shift by 5 days each year of integration |
| 101 |
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(i.e. leading to considerable offset over the years) |
| 102 |
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o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep |
| 103 |
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o start with no AB and no initial filtering (staggerTimeStep): |
| 104 |
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change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5 |
| 105 |
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o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F |
| 106 |
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(external loading & cpl import/export stay in forward_step.F) |
| 107 |
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o update coupling interface to work with new staggerTimeStep |
| 108 |
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o change MDSIO ptracers_pickup. |
| 109 |
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o fix a bug in Flux deriv. vs Ts (pkg/aim_v23/phy_suflux_sice.F); |
| 110 |
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o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*") |
| 111 |
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o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell) |
| 112 |
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| 113 |
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checkpoint54c_post |
| 114 |
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o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr |
| 115 |
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this affects (truncation error) output.txt of test-exp: |
| 116 |
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global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box |
| 117 |
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o pkg/kpp: replace pMask by maskC to reduce memory size (one 3.D array) |
| 118 |
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o change Qnet to always be the net heat flux, (+upward). |
| 119 |
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affects (truncation error) output of natl_box exp.: updated |
| 120 |
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o define the max number of passive tracers in PTRACERS_SIZE.h |
| 121 |
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o start to test mnc routinely in exp0 |
| 122 |
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o add sea-ice loading (sIceLoad) as a new forcing field. |
| 123 |
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checkpoint54b_post |
| 125 |
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o add testreport "-j JOBS" option for parallel builds (tested and pretty |
| 126 |
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impressive on Altix and Opteron systems) |
| 127 |
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o diagnostics can now write NetCDF files through the mnc package |
| 128 |
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o staggerTimeStep & NLFS: update pkg aim_v23 & thsice; update aim.5l_cs output |
| 129 |
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o staggerTimeStep & multi-Dim-Advec: Exch(U,V) added |
| 130 |
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o staggerTimeStep & NLFS: rescale T & S surface tendencies. |
| 131 |
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affects (truncation error) output of lab_sea & natl_box exp.: updated |
| 132 |
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o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.) |
| 133 |
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| 134 |
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checkpoint54a_post |
| 135 |
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o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order). |
| 136 |
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o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.) |
| 137 |
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o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished) |
| 138 |
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o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D) |
| 139 |
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+ internal_wave (shift in writing cg2d_ini_res) |
| 140 |
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checkpoint54a_pre |
| 141 |
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| 142 |
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o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice |
| 143 |
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- modified verification/lab_sea and natl_box_adjoint accordingly |
| 144 |
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| 145 |
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checkpoint54 |
| 146 |
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checkpoint53g_post |
| 147 |
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o prepare splitting of thermodynamics: store convect.counter in common block |
| 148 |
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o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error) |
| 149 |
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output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave |
| 150 |
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o cnh's modifs to gad_advection.F for cube-sphere multi-dim advection |
| 151 |
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o new parameter "nShapS": allow to treat differently S from T (nShapT) |
| 152 |
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o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S) |
| 153 |
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o restore adjointability |
| 154 |
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| 155 |
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checkpoint53f_post |
| 156 |
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o modifications that affect AIM experiment results (update output.txt): |
| 157 |
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- no advection of S at top interface Nr (pkg/generic_advdiff) |
| 158 |
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- air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F) |
| 159 |
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o AIM pkg: |
| 160 |
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- include stability function into surf.Flux derivative relative to Tsurf |
| 161 |
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- calculate clear-sky radiation & surface temp. change (for diagnostics) |
| 162 |
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| 163 |
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checkpoint53e_post |
| 164 |
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o merged cylindrical coord configuration |
| 165 |
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o added rotating_tank experiment |
| 166 |
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checkpoint53e_pre |
| 167 |
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| 168 |
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checkpoint53d_post |
| 169 |
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o faulks upgraded: re-generate output.txt that have changed: |
| 170 |
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global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box |
| 171 |
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o Added Bryan and Lewis, 1979, vertical diffusivity profile |
| 172 |
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o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing. |
| 173 |
o added Sadourny discretization of Coriolis |
o added Sadourny discretization of Coriolis |
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- moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h |
- moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h |
| 175 |
- re-enabled use of omega3 (useAbsVorticity) |
- re-enabled use of omega3 (useAbsVorticity) |
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o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for |
o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for |
| 177 |
vector-invarianet equations |
vector-invariant equations |
| 178 |
- note: does *NOT* yet use same variable visc. for no-slip BC's. |
- note: does *NOT* yet use same variable visc. for no-slip BC's. |
| 179 |
o recoded the lateral boundary conditions for non-hydrostatic w, this time |
o recoded the lateral boundary conditions for non-hydrostatic w, this time |
| 180 |
hopefully without new bugs |
hopefully without new bugs |
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