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revision 1.1392 by mlosch, Thu Mar 10 09:35:14 2011 UTC revision 1.1405 by jmc, Sat Apr 2 18:10:15 2011 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint62v (2011/04/02)
8    o update output of exp4, internal_wave, seaice_obcs, tutorial_plume_on_slope
9      (new velocity statistics after changing maskInW & maskInS definition)
10    o pkg/generic_advdiff with OBCS:
11      use maksInW & maskInS in advective flux and in biharmonic diffusion calculation:
12      equivalent to assumption of no tracer gradient outside the OB region.
13      This will affect the results if using obcs+biharmonic diffusion.
14      update output_adm.txt of experiment bottom_ctrl_5x5 (not expected since no obc)
15    o pkg/obcs:
16      change definition of maskInW & maskInS: leave OB edges inside (maskIn=1)
17      (e.g., maskInW(OB_Ie)=1 ) so that velocity normal-component at OB is still
18      in Interior region. No impact on solution but affects Velocity monitor stats.
19    o pkg/ptracers (adjoint)
20      New option AUTODIFF_PTRACERS_SPLIT_FILES for writing separate
21      tape file for each tracer
22    o model/inc/src and pkg/autodiff: add parameters that allow to turn
23      of parts of the adjoint code at run time. For now, there are only
24      useKPPinAdMode, useGMrediInAdMode, and useSEAICEinAdMode. These
25      parameters are set in data.pkg.
26      This is the lazy coward's version of doing this, but still useful for
27      debugging. In order to do it right, everything needs to be moved to
28      pkg/autodiff.
29    o pkg/autodiff: fix global_sum_tile_ad.F by resetting adsumPhi at
30      the end; this fixes the adjoint balancing code for open boundaries.
31    o pkg/ctrl:
32      - change behavior of xx_${varname}period to be analogous to exf-conventions:
33        xx_${varname}period =   0.,  means time-independent control part
34        xx_${varname}period = -12., means one-year-periodic monthly control part
35      - introduce helper routine ctrl_init_rec (part of ctrl_init.F) to
36        clean up ctrl_init a little, remove unused variables
37      - ctrl_init: fixed the handling of the start/endrec for obcs-variables
38      - move "call cal_GetMonthsRec" from s/r ctrl_get_gen to s/r ctrl_get_gen_rec
39    
40    checkpoint62u (2011/03/15)
41    o model/src:
42      - for the adjoint, change NonLin-FreeSurf initialisation sequence: fill-in
43        h0Fac from INITIALISE_FIXED and reset hFac to h0Fac in INITIALISE_VARIA ;
44      - in initialise_varia.F (except for ALLOW_DEPTH_CONTROL) remove 2nd call to
45        INI_DEPTHS, INI_MASKS_ETC & INI_LINEAR_PHISURF.
46    o pkg/ctrl/obcs/ecco:
47      - remove obsolete, unused, and partially broken code:
48        ctrl_obcsvol/ctrl_obcsbal/ctrl_volflux and code within
49        ALLOW_CTRL_OBCS_BALANCE
50      - put a stop statement into ecco/cost_obcsvol.F, but also add
51        cost_obcsvol to ecco_ad_diff.list
52    o pkg/ecco: fix counting cost function contributions for obcs (code
53      by Matt M.) and diffkr for diagnostics
54    o pkg/ecco, pkg/ctrl, pkg/grdchk:
55      add cost penalty terms for initial uvel, vvel, eta controls
56      and I/O for prior error files
57    o pkg/mdsio:
58       move mds_check4file.F from eesupp/src to mdsio_check4file.F ; add option
59       (new argument) to check for tiled file in mdsioLocalDir : this fix the
60       restart from pickup_som , pickup_dic (& dic_co2atm) with mdsioLocalDir.
61  o pkg/ctrl:  o pkg/ctrl:
62   - ctrl_obcsbal.F, ctrl_obcsvol.F: replace last calls of ctrl_getrec by   - ctrl_obcsbal.F, ctrl_obcsvol.F: replace last calls of ctrl_getrec by
63     ctrl_get_gen_rec, put a stop statement into ctrl_getrec. Remove     ctrl_get_gen_rec, put a stop statement into ctrl_getrec. Remove
# Line 11  o pkg/ctrl: Line 65  o pkg/ctrl:
65   - ctrl_get_gen_rec.F: catch the case of xx_genperiod=0.   - ctrl_get_gen_rec.F: catch the case of xx_genperiod=0.
66  o pkg/ecco  o pkg/ecco
67   - enable adjoint of Stevens OB   - enable adjoint of Stevens OB
68  o pkg/ctrl/ecco/grdchk:  o pkg/ctrl/ecco/grdchk:
69    - remove global declaration of tmpfldx/yz and tmpfldx/yz2.    - remove global declaration of tmpfldx/yz and tmpfldx/yz2.
70      Fortunately, we do not have any tests for the numerous cpp-flagged      Fortunately, we do not have any tests for the numerous cpp-flagged
71      option of "obcs as control parameters" so we will never know      option of "obcs as control parameters" so we will never know
72      if this is an improvement (but at least now things compile).      if this is an improvement (but at least now things compile).
73    - remove an obsolete initialization from ecco_cost_init_barfiles.F    - remove an obsolete initialization from ecco_cost_init_barfiles.F
74    - fix some problems within never used ifdefs to make the code compile    - fix some problems within never used ifdefs to make the code compile
75  o pkg/obcs:  o pkg/obcs:
76   - Refine Interior mask definition to work with more complex OB (e.g.   - Refine Interior mask definition to work with more complex OB (e.g.
77     if OB_Ie < OB_Iw); In case default setting is not sufficient, allows to     if OB_Ie < OB_Iw); In case default setting is not sufficient, allows to
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