4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o pkg/gmredi: |
8 |
|
- add Boundary-Value-Problem bolus transport (Ferrari etal, OM 2010) code |
9 |
|
from Christopher Wolfe (UCSD); add partial cell factor in vertical derivative; |
10 |
|
add a verification test-run (front_relax.bvp) to test GM_useBVP. |
11 |
|
o pkg/seaice: |
12 |
|
- for SEAICE_DO_OPEN_WATER_GROWTH, replace Gael's implementation with Ian's. |
13 |
|
- the new SEAICE_DO_OPEN_WATER_MELT allows open-water air-sea heat fluxes to also melt ice. |
14 |
|
o pkg/seaice: |
15 |
|
- McPhee formula for Ice-Ocean fluxes (provided by Ian Fenty). |
16 |
|
- can be used by #define MCPHEE_OCEAN_ICE_HEAT_FLUX in SEAICE_OPTIONS.h |
17 |
|
o pkg/cheapaml: |
18 |
|
- from Nico Wienders: New version of this package. |
19 |
|
o pkg/flt: |
20 |
|
- add CPP options to prevent floats to re-enter the opposite side of |
21 |
|
a periodic domain (default: keep periodicity) |
22 |
|
o pkg/gmredi: |
23 |
|
- apply exchange to GM_PsiX,GM_PsiY to get valid values near CS-corners |
24 |
|
(needed for multi-dim advection). |
25 |
|
- switch on GM Advective form in global_ocean.cs32x15 and update output.txt |
26 |
|
o model/src: |
27 |
|
- fix wrong re-setting of addMass array (ALLOW_ADDFLUID) for atmospheric run. |
28 |
|
o tutorial_tracer_adjsens |
29 |
|
- extend to NLFS and replace maskC by hFacC |
30 |
|
(change reference output accordingly) |
31 |
|
|
32 |
|
checkpoint62r (2011/01/24) |
33 |
|
o testreport: |
34 |
|
- add option -deloutp (-do) to remove output file after successful run |
35 |
|
- add option -mfile (-mf) for MPI machile-file and for each test-exp, |
36 |
|
extract exact list of procs from this file ; adjust COMMAND by |
37 |
|
replacing TR_MFILE & TR_NPROC with local machile-file & Nb of MPI procs. |
38 |
|
o pkg/ecco: replace old ineffective way of penalizing deviations from |
39 |
|
first guess (of obcs) with code by Matt Mazloff |
40 |
|
o pkg/ctrl: add code that allows the use of ALLOW_OBCS?_CONTROL without |
41 |
|
exf/cal |
42 |
|
- ctrl_init: fix initialisation (computation of diffrec) for obcs-ctrl |
43 |
|
and handle case of obcs?period == 0 |
44 |
|
Not affected by these changes: There is still an inconsistency in |
45 |
|
the computation of start/endrec for the obcs variables for ALLOW_CAL |
46 |
|
defined (see comment by Menemenlis, 7-Mar-2003) |
47 |
|
- make S/R ctrl_get_gen_rec return something meaningful even if |
48 |
|
ALLOW_CAL is not defined |
49 |
|
- ctrl_getobcs?: simplify code so that it does not need to use |
50 |
|
S/R exf_swapfields |
51 |
|
o testreport: |
52 |
|
allow to test MPI with different number of processors for each experiment: |
53 |
|
create file "SIZE.h.mpi" in each build dir. |
54 |
|
Note: update of "-command" argument not yet implemented. |
55 |
|
o model/src, pkg/autodiff, pkg/ecco, pkg/seaice: |
56 |
|
alleviate the need for additional 3D tapes when using |
57 |
|
the non-inear free surface in the adjoint. This is done |
58 |
|
by adding an 'update' of hfacc etc. to their current |
59 |
|
value at the beginning of forward_step.F. |
60 |
|
o pkg/seaice |
61 |
|
seaice_lsr: move stress-divergence computations out of outer pseudo- |
62 |
|
timestepping loop |
63 |
|
o pkg/obcs/obcs_prescribe_read.F: move 'CALL OBCS_EXTERNAL_FIELDS_LOAD' |
64 |
|
up, so that the calls of the ctrl_* subroutines are really at the end |
65 |
|
of the routine. |
66 |
|
o pkg/gmredi: |
67 |
|
allow to specify a 2-D horizontal map and a 1-D vertical profil |
68 |
|
as scaling factor for Isopycnal diffusivity (Redi) and GM diffusivity. |
69 |
|
o pkg/seaice: |
70 |
|
move lsr iterations from seaice_dynsolver to seaice_lsr. |
71 |
|
o pkg/seaice: |
72 |
|
reduce memory footprint of seaice mutldim advection tapes, |
73 |
|
by using a 2D tape independent of the generic_advdiff ones, |
74 |
|
and setting GAD_AREA=1 etc. rather than GAD_AREA=101 etc. |
75 |
|
|
76 |
|
checkpoint62q (2010/12/29) |
77 |
|
o model/src: |
78 |
|
- check horizontal grid-spacing for unset or zero/negative values. |
79 |
|
- change AD test hs94.1x64x5 to be truly a 2-D set-up. |
80 |
|
o pkg/flt: |
81 |
|
- use (recent) mdsio S/R MDS_READVEC_LOC instead of local FLT_MDSREADVECTOR |
82 |
|
- precision of input and output files set according to readBinaryPrec |
83 |
|
and writeBinaryPrec (previously always 64.b), pickup remains at 64 bits. |
84 |
|
- initial float position from tiled file was not converted to index space |
85 |
|
(looks like a bug): fixed to make it similar to initial pos. global file. |
86 |
|
o global_ocean.cs32x15: |
87 |
|
change SIZE.h of AD set-up to get same tiling as with MPI. |
88 |
|
Update output_adm, output_adm.thsice (pass@14) & output_adm.seaice (fail@11) |
89 |
|
o model/src: |
90 |
|
add flag to control printing of domain fields (bathymetry, hFac ...) in |
91 |
|
ini_mask_etc (call to plot_fieds_xy*). |
92 |
|
o pkg/thsice: |
93 |
|
if useEXF, some forcing fields are not valid in overlap: fixed by computing |
94 |
|
over the interior only + apply EXCH at the end (like with SEAICE advection). |
95 |
|
o pkg/mdsio: |
96 |
|
- add 2 arguments to S/R MDS_PASS_R4/8toRL/S for overlap size of buffer |
97 |
|
to copy to/from, so that it can be used to replace MDS_PASS_WH_R8toRL/RS. |
98 |
|
- change barrier call for safe multi-threads access to 3-D shared buffer. |
99 |
|
- MDS_READ/WRITEVEC_LOC use buffers from MDSIO_BUFF_3D.h (instead of local ones) |
100 |
|
- replace call to MDS_PASS_WH_R4/8toRL with call to MDS_PASS_R4/8toRL and |
101 |
|
remove the 4 S/R MDS_PASS_WH_R4/8toRL/S. |
102 |
|
o pkg/flt: |
103 |
|
- add fourth-order Runge-Kutta integration |
104 |
|
- add basic exch2 support (only 1 facet supported so far!) |
105 |
|
o pkg/mdsio+rw: |
106 |
|
new S/R to read local (or tile independent) vector (read counterpart of |
107 |
|
mds_writevec_loc, and front-end write_glvec_rl/rs). |
108 |
|
o global_ocean.cs32x15: additional input_ad.seaice experiment |
109 |
|
that uses pkg/seaice rather than pkg/thsice. |
110 |
|
(using multidim advection for seaice) |
111 |
|
o towards more F95 syntax for array specification in namelist: |
112 |
|
- change "data.diagnostics" (data.ptracers was changed before checkpoint62p) |
113 |
|
of all verification experiments. |
114 |
|
e.g.: line: fields(1,3)='ETAN ','ETANSQ ', |
115 |
|
was changed to: fields(1:2,3)='ETAN ','ETANSQ ', |
116 |
|
- finish adding "-DNML_EXTENDED_F77" to DEFINES list in pgf77 and g77 optfiles |
117 |
|
o global_ocean.cs32x15: additional input.seaice experiment |
118 |
|
that uses pkg/seaice rather than pkg/thsice. |
119 |
|
|
120 |
|
checkpoint62p (2010/12/17) |
121 |
|
o pkg/thsice: rename (ad tape index) iicekey as ticekey, and move it |
122 |
|
to THSICE_SIZE.h to avoid conflict with pkg/seaice. |
123 |
|
o pkg/seaice: add seaice_diffusion.f seaice_map_thsice.f to adjoint. |
124 |
|
allow for use of multim. advection in seaice adjoint. |
125 |
|
o pkg/seaice: add diagnostics for snow precipitation and sublimation flux |
126 |
|
- first attempt to close budgets by taking into account the freshwater |
127 |
|
flux implied by the sublimation of snow and ice. So far only the |
128 |
|
volume budget is closed, turn on with soon-to-be-retired-again CPP-Flag |
129 |
|
SEAICE_ADD_SUBLIMATION_TO_FWBUDGET |
130 |
|
o eesupp/src: |
131 |
|
new S/R with new option (NML_EXTENDED_F77) to change array specification |
132 |
|
from F95 standard to commonly accepted extended F77 form. |
133 |
|
This would allow to use F95 syntax in namelist (needed with gfortran 4.4.5) |
134 |
|
and to revert back to the original syntax (with -DNML_EXTENDED_F77) |
135 |
|
for less tolerant f77 compiler (e.g., pgf77, g77). |
136 |
|
o globalFiles: |
137 |
|
commented out in parameter file "data" since it's not safe with MPI |
138 |
|
(e.g., wrong on aces); keep it if useSingleCpuIO=T (but not doing much |
139 |
|
in this case); no longer commented out in restart test (tst_2+2). |
140 |
|
o add adTapeDir to specify a special directory where adjoint tapes are |
141 |
|
written/read (adread_adwrite.F). adTapeDir is specified in data/PARM05 |
142 |
|
and cannot be used together with mdsioLocalDir. |
143 |
|
o nesting pkgs: |
144 |
|
- packages_init_variables : put call to OBCS_INIT_VARIABLES in last position |
145 |
|
- update Gianmaria's Nesting pkgs (from Contrib/nesting_sannino) |
146 |
|
- add parameter files + utils dir + output from short run on beagle. |
147 |
|
o pkg/seaice: |
148 |
|
fix seaice_growth.F store directives; update results of exp. lab_sea.ad |
149 |
|
o pkg/seaice: explicitly store tsurfloc in seaice_solve4temp.F to avoid |
150 |
|
unnecessary copying in adjoint code, requires new parameter NMAX_ITER |
151 |
|
|
152 |
|
checkpoint62o (2010/11/25) |
153 |
|
o pkg/exf: |
154 |
|
- change CPP option EXF_VERBOSE to run-time logical param exf_verbose. |
155 |
|
o pkg/seaice: |
156 |
|
- seaice_ocean_stress: split a loop for better vectorization of the |
157 |
|
adjoint code |
158 |
|
- seaice_growth.F: fix bug in conservation of freshwater connected to |
159 |
|
capping of heff, put contribution into d_HEFFbyNEG |
160 |
|
- replace irritating parameters SEAICE_latentWater/Ice and SEAICE_sensHeat |
161 |
|
by something more sensible (parameters that are what their name implies) |
162 |
|
- change some defaults, so that by default exf-parameters are used for |
163 |
|
things like rhoAir, cpAir,latent/sensible heat parameters, in order |
164 |
|
to reproduce the old results, many data.seaice now contain funny values |
165 |
|
for cpAir and latent heat of sublimation |
166 |
|
o packages_readparms.F: move exf_readparms up in line so that |
167 |
|
exf-parameters are visible for other packages (e.g. seaice) |
168 |
|
o debugMode & debugLevel=2: |
169 |
|
- differentiate between debugMode & debugLevel=2: |
170 |
|
debugMode: controls printing of debug messages (sequence of S/R calls). |
171 |
|
debugLevel: controls printing of algorithm intermediate results and stats. |
172 |
|
- remove "if debugLevel=2 => debugMode" but keep "debugMode => debugLevel=2"; |
173 |
|
=> allows to print debug-stats without all sequence of call messages. |
174 |
|
- switch control of debug print from debugLevel to debugMode in many S/R. |
175 |
|
o pkg/obcs (obcs-sponge): |
176 |
|
fix bug that was introduced on Oct 25 (in dynamics.F v1.151): put back the |
177 |
|
call to OBCS_PRESCRIBE_EXCHANGES (need to exch gU,gV when using obcs-sponge) |
178 |
o pkg/generic_advdiff: |
o pkg/generic_advdiff: |
179 |
- record overlap minimum size for each advection scheme; |
- record overlap minimum size for each advection scheme; |
180 |
- refine criteria on overlap minimum size; |
- refine criteria on overlap minimum size; |