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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o model/src: |
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fix missing EmPmR in 3-D solver RHS (was in cg2d_b but missing in cg3d_b). |
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update output of exp. global_ocean.cs32x15.viscA4 |
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o update output of exp. global_ocean.cs32x15.icedyn after removing |
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#define SEAICE_OLD_AND_BAD_DISCRETIZATION from SEAICE_OPTIONS.h |
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o add entry points for Gianmaria's Nesting pkgs (from Contrib/nesting_sannino) |
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o mnc: add horizontal grid coordinates (XC,YC) and (XG,YG) to netcdf output |
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for complex grids, for now only to "state", "adstate", "adexf", "adseaice" |
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o model: add Christopher Wolfe's implemetation of the single reduction cg2d |
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(d'Azevedo, Eijkhout, and Romine, 1999) with CPP-flag ALLOW_SRCG and |
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runtime flag useSRCGSolver. Modify verification experiment global_with_exf |
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to test this code |
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o pkg/cd_code: |
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Change defaut D-grid time-stepping to get the same for D-grid momentum as for |
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C-grid momentum. D-grid velocity used to be stepped forward in time with |
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Adams-Bashforth only on surface pressure term. Tests show that using AB on |
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D-grid coriolis term improves stability (as expected from CD-scheme paper). |
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To reproduce old results, add 2 options (in CD_CODE_OPTIONS.h). |
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Update results of exp: global_with_exf (x2), ideal_2D_oce, isomip (x2), |
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lab_sea (3 Fwd +3 AD), natl_box (x2), tutorial_global_oce_biogeo (Fwd+AD), |
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tutorial_global_oce_latlon, tutorial_global_oce_optim & tutorial_tracer_adjsens. |
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Keep old results by adding CD_CODE_OPTIONS.h in exp: cfc_example, exp2, |
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lobal_ocean.90x40x15(+AD), global_ocean_ebm(+AD) and OpenAD. |
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o pkg/obcs: |
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- fix bug in initialisation (broken since Oct 1rst modification) |
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for useOBCSprescribe without useEXF. |
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checkpoint61y |
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o pkg/seaice |
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- change (once again) the discretization for the evp solver: rather than |
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squaring the averages of strain rates, average the squares to give |
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a better approximation to VP behavior (in simple test); this breaks |
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verification experiments that use EVP (lab_sea and lab_sea.hb87) |
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--> update outputs |
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o add CPP-flag (in mom_calc_visc.F) and TAF directive (in gmredi_slope_limit) |
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to improve vectorization of adjoint code on TARGET_NEC_SX |
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o verification/vermix: |
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- change vermix to a more "classical" 1d column with high vertical |
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resolution, seasonal heat flux forcing and constant wind forcing |
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--> update outputs |
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o pkg/seaice |
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- fix diagnostics of principal stress components for EVP |
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- add optional diagnostics of non-linear convergence for LSOR solver |
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- make maximum zeta a runtime parameter |
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o model/src (3-d solver): |
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Undo modif from Dec 12, 2005 (solve_for_pressure.F cvs version v.49), |
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which consisted in removing the Surf. Non-Hydrostatic pressure from the |
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whole column and adding it to Eta (inspired from Casualli, 1999): |
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Only affects 3-D solver initial guess and only if using ExactConserv, |
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but tests did show a degradation of solver convergence. For this reason, |
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decide to disable this piece of code. |
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to recover previous version, just set zeroPsNH = exactConserv (line 78). |
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Update output of exp. global_ocean.cs32x15.viscA4 & hs94.cs-32x32x5.impIGW |
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o pkg/ggl90: |
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- fix previous modif (unfortunatly has not been documented here). |
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o pkg/seaice/autodiff: |
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- add CPP flag to include clipping of zeta in EVP code; |
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although clipping of zeta is not necessary for EVP and not recommended |
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it was done by default, now clipping is disabled by default |
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- modify computation and store zetaC/Z in seaice_evp for TAF |
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- add CPP-flag SEAICE_ALLOW_CLIPVELS (undefined by default) |
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- change seaice_calc_viscosities/strainrates for better |
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vectorization after AD by TAF |
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- rearrange common blocks in SEAICE.h once again for easier dumps of |
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adjoint output, adjust adcommon.h and g_common.h |
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- change flux form of default advection scheme for better vectorization |
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of adjoint code |
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- modify lab_sea/input.lsr to test the flux form of default advection |
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scheme |
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o autodiff: fix seaice fields in g_common.h (left over from 3 to 1 level |
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transition in checkpoint61r) |
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checkpoint61x |
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o adjoint: adding two new verification experiments |
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* tutorial_global_biogeo: an online dic sensitivity experiment |
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(work with G. Forget) |
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* tutorial_dic_adjoffline: an offline dic sensitivity experiment |
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(an update of the Dutkiewicz et al., 2006 paper) |
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Both use the same CO2FLUX cost function, but different controls |
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Gradient checks look good, but some recomp. could still be traightened out |
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Should add xx_dic control variable to test at some point |
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o model/src: |
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add run-time parameters to check and/or mask initial Temp & Salt |
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o pkg/ptracers: |
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apply zonal filter (if used) to all passive tracers |
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checkpoint61w |
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o adjoint: |
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* update and finish work on adjoint of dic package (G. Forget) |
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* start adjoint of offline package |
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* bug fix for cube-sphere TLM code (active_file_g.F) |
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o tutorial_global_oce_optim: |
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now tested with 4 tiles (change data.grdchk and update output_adm.txt) |
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and add SIZE.h_mpi for MPI testing |
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o pkg autodiff |
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- fix bug in autodiff_restore |
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- make genmake2 remove comments and empty lines from ad_input_code.f in |
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order to reduce file size (new script file remove_comments_sed) |
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o allows to specify vertical profile of vertical viscosity (viscArNr) |
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o pkg autodiff |
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autodiff_ini_model_io: comment out writing of grid information to netcdf |
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files, because at this time the grid fields are a bunch of zeros |
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(this is analogous to ini_mnc_vars.F) |
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o pkg seaice/autodiff: |
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left-over from removing the 3-time-level fields: |
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- small rearrangement of common blocks (SEAICE.h) |
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- fix field declaration in order to get meaningful output in |
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adseaice.*.nc (adcommon.h) |
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o pkg obcs: |
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- go through NH code only if nonHydrostatic=T |
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- fix restart for Orlanski (Hydrostatic; still to fix NH+Orlanski restart) |
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- move call to OBCS_CALC before SEAICE_MODEL which needs seaice-obc fields |
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=> Update output of experiment seaice_obcs |
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- useOBCSbalance: code is wrong with multi-tile / proc: add a stop. |
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- fix NH+Orlanski restart (add wvel OBC value in pickup file) |
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- fix restart for useOBCSprescribe + useEXF |
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o pkg ctrl |
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- make obcs as control parameter work also with useSingleCPUio |
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- replace a few sny and snx by Ny and Nx to be consistent with |
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ctrl_set_globfld_x/yz.F |
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o pkg seaice |
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- re-introduce global field frWtrAtm for the case of |
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ALLOW_MEAN_SFLUX_COST_CONTRIBUTION defined (SEAICE.h, seaice_growth.F) |
| 130 |
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- catch the case of an empty filename in seaice_cost_init_fixed.F |
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o pkg ecco: |
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- small bug fixes in the_main_loop |
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. fix order of monitor arguments |
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. change SEAICE_MULTILEVEL to SEAICE_MULTICATEGORY |
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. move include DYNVARS.h up outside the ALLOW_AUTODIFF_TAMC block so |
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that ALLOW_ECCO_FORWARD_RUN works with NONLIN_FRSURF |
| 137 |
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- replace cos(yc*deg2rad) by _rA in cost_mean_heat/saltflux.F, fix the |
| 138 |
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imbalance diagnostics for wmean_h/sflux = 0 |
| 139 |
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- add actual values to f_obcsn/s/w/e in ecco_cost_final.F |
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- catch the case of empty filenames in ecco_cost_init_fixed.F |
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and ecco_readparms.F |
| 142 |
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- fix the logic of wsalt=0.and.wsalt2=0 to wsalt=0.or.wsalt2=0 (and theta) |
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to make this statement meaningfull in ecco_cost_weights.F |
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o pkg zonal_filt: |
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- change ZONAL_FILTER S/R interface (allows to filter 2-D fields) |
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- when using rStar, filter uVel*hFacW instead of uVel |
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(tested without topography: fix a Pb of growing instability with NLFS) |
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o pkg/aim/thsice: |
o pkg/aim/thsice: |
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-Add capacity to read a Q-Flux to be applied in slab-mixed layer thsice_slab_ocean.F |
-Add capacity to read a Q-Flux to be applied in slab-mixed layer thsice_slab_ocean.F |
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(works as SST restoring) |
(works as SST restoring) |
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