4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
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|
7 |
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o new pkg: down_slope |
8 |
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density-driven downsloping flow parameterisation (Tellus, 1999, 412-430). |
9 |
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- presently, modify T & S inland (dwnslp_calc_rho.F). |
10 |
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can be avoided if rho was stored in common bloc and used in calc_phi_hyd. |
11 |
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- implementation for ocean in P-coords not tested. |
12 |
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- add secondary test to global_ocean.90x40x15 (input.dwnslp) to check this pkg. |
13 |
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o move kSurfC,kSurfW & kSurfS from SURFACE.h to GRID.h (next to kLowC) |
14 |
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(to facilitate conversion of oceanic pkg to p-coordinate). |
15 |
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o change FIND_RHO to FIND_RHO_2D : |
16 |
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pass arguments tFld & sFld as local (tile) 2D-arrays ; +fix EOS_CHECK. |
17 |
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o new pkg: cheapaml |
18 |
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|
19 |
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checkpoint61b |
20 |
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o exch2: |
21 |
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change index bounds in rx2_cube exchanges (new S/R: EXCH2_GET_UV_BOUNDS) |
22 |
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- no longer depend on the order sequence (N,S,E,W). |
23 |
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- 3rd exchange no longer needed (tested with 24 tiles). |
24 |
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- same modif to hand-written adjoint S/R (global_ocean.cs32x15: zero diff) |
25 |
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- exch_UV_A-grid readily available (but not yet tested). |
26 |
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comment out 3rd exch call and remove copy of V to U at SE & NE face-corners |
27 |
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(both are no longer needed) in exch_uv: no effect in forward run; but |
28 |
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get truncation error differences with adjoint exch. |
29 |
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o exch2: |
30 |
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- change index-bounds storage (moved from target to local tile, |
31 |
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more intuitive this way) ; rename/remove some variables. |
32 |
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- change utils/exch2/matlab-topology-generator & code_mods accordingly. |
33 |
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|
34 |
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checkpoint61a |
35 |
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o exch2/matlab-topology-generator: |
36 |
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fix bug in index bounds for N-S internal exchange (hard to tell if this |
37 |
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had any effect on the solution). |
38 |
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o pkg/mnc: small fix in mnc_handle_err: make sure that length of msgbuf |
39 |
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is exceeded |
40 |
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o testreport: modify syntax of awk, so that it works also with |
41 |
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awk, and not only with nawk and gawk |
42 |
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|
43 |
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checkpoint61 |
44 |
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o autodiff |
45 |
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Change default for TAF usage by removing argument '-nonew_arg' |
46 |
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This changes TAF subroutine argument list (ordering of active var.) |
47 |
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Omission of this flag leads to incompatibility w.r.t. TAMC |
48 |
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To restore TAMC-compatibility, need following modifs: |
49 |
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* use adoptfile tools/adjoint_options/adjoint_tamc_compatibility |
50 |
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* use CPP option #define AUTODIFF_TAMC_COMPATIBILITY |
51 |
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Tested TAF version is 1.9.22 |
52 |
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N.B.: exch2 hand-written adjoint code currently not TAMC compatible |
53 |
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|
54 |
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checkpoint60 |
55 |
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--->>> This is the last checkpoint for which generating the adjoint |
56 |
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--->>> is done via the TAMC-compatibility TAF-flag "-nonewarg" |
57 |
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--->>> by default. |
58 |
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--->>> Future checkpoints will ommit this flag by default. |
59 |
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o pkg/generic_advdiff, os7mp: simplify and avoid division by zero. |
60 |
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o pkg/grdchk: Add gradient check to etan0 perturbations. |
61 |
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o pkg/exf: read ice area from file (#ifdef ALLOW_ICE_AREAMASK). |
62 |
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o pkg/autodiff: more flexibility in zeroadj. |
63 |
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model/src: modifying do_oceanic_phys.F accordingly. |
64 |
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o pkg/ctrl: Bounds for (kapgm,kapredi,eddypsi) parameter estimation. |
65 |
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o model/src and pkg/gmredi: GMREDI_WITH_STABLE_ADJOINT CPP option |
66 |
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special setup of gmredi for which the adjoint is stable |
67 |
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enough for parameter optimization. |
68 |
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o bridging the gap between eddy stress and GM. |
69 |
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-> eddyTau is replaced with eddyPsi (eddyTau = f x rho0 x eddyPsi) |
70 |
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along with a change in CPP option (now ALLOW_EDDYPSI). |
71 |
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-> when using GM w/ GM_AdvForm: |
72 |
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The total eddy streamfunction (Psi = eddyPsi + K x Slope) |
73 |
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is applied either in the tracer Eq. or in momentum Eq. |
74 |
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depending on data.gmredi (intro. GM_InMomAsStress). |
75 |
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-> ALLOW_EDDYPSI_CONTROL for estimation purpose. |
76 |
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The key modifications are in model/src/taueddy_external_forcing.F |
77 |
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pkg/gmredi/gmredi_calc_*F pkg/gmredi/gmredi_*transport.F |
78 |
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|
79 |
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checkpoint59r |
80 |
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o new S/R (pkg/mdsio/mdsio_facef_read.F) reading of sNx+1 x sNy+1 array |
81 |
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from per-face file (take S/R READSYMTILE_RS out of ini_curvilinear_grid.F); |
82 |
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fix option to read coriolis(@ cell-corner) from files with CS-grid. |
83 |
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o pkg/mnc: add some attributes to standard 1D-coordinate variables |
84 |
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o pkg/diagnostics: enforce missing_value attribute for scalar variables at |
85 |
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mass points, when using mnc for output |
86 |
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- add runtime parameter (missing_value, missing_value_int) to override |
87 |
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default (which is the value of getcon('UNDEF')) |
88 |
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o pkg/mnc: prepare mnc for the actual use of missing values with the |
89 |
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diagnostics package: small fix in mnc_cw_readwrite.template and more |
90 |
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initialisation of never used fields |
91 |
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- replace mnc_common.h and mnc_id_header.h with corresponding upper case |
92 |
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versions |
93 |
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o pkg/thsice/thsice_ini_vars.F added default initial values so that |
94 |
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thermodynamics sea ice solver does not blow up when some initial fields |
95 |
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are missing. |
96 |
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o move from external_forcing_surf.F to ini_forcing.F |
97 |
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the p-coord. hack consisting in using pLoad to set phi0surf ; |
98 |
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update output of tutorial_global_oce_in_p (affected @ truncation level). |
99 |
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o Freshen up a bit hs94.1x64x5, notably: |
100 |
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remove rotationPeriod and tRef=5*0. (adjoint only), and add |
101 |
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exactConserv=.TRUE. |
102 |
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o pkg/generic_advdiff: |
103 |
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change option GAD_ALLOW_SOM_ADVECT to GAD_ALLOW_TS_SOM_ADV which only |
104 |
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applies to files where Temperature & Salinity 2nd Order moments are used. |
105 |
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o pkg/ptracers: add second-order moment advection schemes (80 and 81); |
106 |
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this uses a dynamically allocated internal state data structure |
107 |
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(#define PTRACERS_ALLOW_DYN_STATE in PTRACERS_OPTIONS.h) |
108 |
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and requires a fortran 90 compiler |
109 |
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|
110 |
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checkpoint59q |
111 |
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o pkg/mom_vecinv: Add energy & enstrophy conserving scheme (selectVortScheme=3) |
112 |
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(from Sadourny, described by Burridge & Haseler, ECMWF Rep.4, 1977) |
113 |
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o Refresh tutorial_global_oce_biogeo, notably: |
114 |
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- change bathymetry (put back seamounts in ACC, use hFacs) |
115 |
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- change EOS (POLY3 --> JMD95Z) |
116 |
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- use Bryan-Lewis vertical diffusivity |
117 |
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- use multidimensional advection |
118 |
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- remove old virtual virtual in dic pkg, now done through ptracer pkg |
119 |
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- change a couple of parameters in dic pkg |
120 |
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o pkg/ctrl: change formula in adctrl_bound.F and add a parameter to ctrl_map_ini_gen.F |
121 |
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o pkg/obcs: change default to OBCSfixTopo = .true., |
122 |
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- set OBCSfixTopo=.false. in exp4/input/data.obcs to reproduce old result |
123 |
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- replace "debugMode" with "debugLevel .GE. debLevB" |
124 |
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o implementation of TAF directives for gchem,cfc,dic |
125 |
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o remove "exp5" (replaced by tutorial_deep_convection). |
126 |
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o pkg/obcs: add code to fix topography gradients normal to open boundaries; |
127 |
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this requires computing the index fields OB_Jn/Js/Ie/Iw in obcs_readparms; |
128 |
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the code can be turned on by setting OBCSfixTopo = .true. in data.obcs |
129 |
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--> changes results in exp4, seaice_obcs |
130 |
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o tutorial_deep_convection : |
131 |
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update the set-up and increase resolution and domain size ; start |
132 |
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from pseudo initial conditions = output at t=120mn in order to see |
133 |
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something happening when running testreport. |
134 |
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o pkg/seaice: add os7mp as an advection scheme |
135 |
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add check for advection schemes |
136 |
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add a flag for restoring T and S underneath sea ice |
137 |
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o pkg/my82: add netcdf-support and diagnostics |
138 |
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o thsice pkg: |
139 |
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- Now hsMax limits snow height by turning it into ice following |
140 |
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flooding scheme (and now conserving energy) |
141 |
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- Slight rewriting of the formula in thsice_calc_thick.F |
142 |
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- Parameter rhowi eliminated to be replaced by floodFac = (rhosw-rhoi)/rhos |
143 |
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--> changes results of global_ocean.cs32x15.icedyn and global_ocean.cs32x15.thsice |
144 |
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|
145 |
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checkpoint59p |
146 |
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o gchem / dic / cfc : |
147 |
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- add useDIC, useCFC , read from "data.gchem" (& hold in GCHEM.h); |
148 |
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- add new parameter files: "data.dic" & "data.cfc" ; |
149 |
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- various re-arrangement in initialisation & header file ; |
150 |
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- fix tutorial_global_oce_biogeo for multi-threaded test. |
151 |
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o pkg/dic: test for "pickup_dic" file when restarting ; |
152 |
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if no pickup-file, can restart with a re-initialised pH (same as it did |
153 |
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before) providing pickupStrictlyMatch is set to False. |
154 |
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o change argument list of S/R PTRACERS_WRITE_PICKUP & MYPACKAGE_WRITE_PICKUP |
155 |
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+ fix call to S/R GGL90_WRITE_PICKUP & DIC_WRITE_PICKUP |
156 |
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o add a "warning" (to Error msg file) when an Active Tracer is not using AB-2 |
157 |
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and staggerTimeStep is off (needed for stability of Internal-wave dynamics). |
158 |
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o move out of PARAMS.h & data the last pieces of old-ptracer code: tauTr1ClimRelax, |
159 |
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& lambdaTr1ClimRelax ; put those 2 params in PTRACERS_PARAMS.h & data.ptracers |
160 |
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(note: not clear to me what lambdaTr1ClimRelax is still used for ...) |
161 |
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o pkg/mom_vecinv: - new parameter "selectVortScheme" to select which |
162 |
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scheme to use for vorticty-term ; |
163 |
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- compute upwindVorticity=T case within mom_vi_u/v_coriolis_c4.F |
164 |
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(with default selectVortScheme, return to original discretisation) |
165 |
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- remove weird combination (e.g.: upwindVorticity & highOrderVorticity) |
166 |
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o pkg/seaice: add a line to the summary to indicate grid type (B/C) |
167 |
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o in mom_calc_visc, fix average value of viscAh_W & viscA4_W next to the |
168 |
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bottom ; only used with variable horizontal viscosity and non-hydrostatic. |
169 |
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also fix diagnostics VISCAHW & VISCA4W. |
170 |
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|
171 |
|
checkpoint59o |
172 |
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o dome/code/obcs_calc.F: avoid division by zero (detected using gfortran). |
173 |
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o change the loop ordering in most gad_*_adv_x.F to improve vectorization: |
174 |
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move a few statemens out the main loop into separate loops |
175 |
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o pkg/shelfice: |
176 |
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- sort out freshwater flux; convert freshwater fluxes to mass fluxes |
177 |
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(kg/m^2/s), does not break tests, because in verification/isomip, |
178 |
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rhoConstFresh=rhoConst (by accident) |
179 |
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- rearrange computation of tLoc, sLoc, pLoc to make code more efficient |
180 |
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- move S/R find_rho_scalar, pkg/ecco/sw_ptmp.F, pkg/ecco/sw_adtg.F into |
181 |
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new file model/src/seawater.F, so that they are available for all pkgs. |
182 |
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- convert potential temperature into in-situ temperature. This changes the |
183 |
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isomip tests => update tests |
184 |
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o add a flag writePickupAtEnd (default=true) to be able to suppress |
185 |
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writing a pickup at the last timestep |
186 |
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o tools/mpack-1.6 : |
187 |
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- disable automake (not working) and autoconf (not needed). |
188 |
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- update to version 1.6.4 which fix MD5 code on some 64 bits platforms |
189 |
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also cleaner with much less compilation warnings. |
190 |
|
o pkg/profiles: |
191 |
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rename profiles_interp_mean_genericgrid as profiles_interp_mean_gg |
192 |
|
(for "less than 32 characters name" compiler requirement) |
193 |
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o pkg/obcs and pkg/exf: added capability to specify seaice open boundary |
194 |
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conditions that have a different sampling frequency than S/T/U/V obcs |
195 |
|
o pkg/diagnostics (stats-diags): |
196 |
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- fix global Min/Max in case 1 processor get only empty tiles |
197 |
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o genmake2: replace (4 times) |
198 |
|
make genmake_tc_1.o >> genmake_warnings 2>&1 |
199 |
|
with |
200 |
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COMM="$CC $CFLAGS -c genmake_tc_1.c" |
201 |
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echo $COMM >> genmake_warnings |
202 |
|
$COMM >> genmake_warnings 2>&1 |
203 |
|
to make genmake2 always see the value of CC as specified in the optfile. |
204 |
|
o generic_advdiff: - prather advection scheme (SOM) coded for CS-grid. |
205 |
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- add diagnostics for 1srt & 2nd Order moments and sub-grid variance. |
206 |
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- modify verification advect_cs test to test SOM-advection on CS-grid. |
207 |
|
o pkg/ctrl: |
208 |
|
- Rewrite of ctrl_map_ini_ecco.F, |
209 |
|
introducing a generic routine (ctrl_map_ini_gen.F). |
210 |
|
- Modification of ctrl_bound/adctrl_bound handling control vector bounds. |
211 |
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|
212 |
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checkpoint59n |
213 |
|
o pkg/diagnostics: for large number of diagnostics, store diagnostic mate |
214 |
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number in dedicate array "hdiag": |
215 |
|
- new version of S/R DIAGNOSTICS_ADD2LIST : DIAGNOSTICS_ADDTOLIST |
216 |
|
with 1 more argument (mate number); modify old version DIAGNOSTICS_ADD2LIST. |
217 |
|
- many small changes (integer format) for large number of diagnostics |
218 |
|
- start to use DIAGNOSTICS_ADDTOLIST (necessary for diagnostics with |
219 |
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a counter mate) in pkg diagnostics, ptracers, thsice & aim_v23. |
220 |
|
o add parameter rotateGrid and Euler angles EulerPhi/Theta/Psi. For |
221 |
|
usingSphericalGrid, this allows to define the rotated grid coordinates |
222 |
|
via phiMin/thetaMin/dxSpacing/dySpacing, etc., but then re-compute the |
223 |
|
geographical coordinates according to the inverse of the rotation defined |
224 |
|
by the Euler angles, so that Coriolis parameter and online-interpolation by |
225 |
|
exf works with the geographical coordinates on XC/YC/XG/YG. |
226 |
|
Naturally, this feature does not work with all packages, so some |
227 |
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combinations are prohibited in config_summary (flt, flt_zonal, ecco, |
228 |
|
profiles), because there the coordinates are assumed to be regular |
229 |
|
spherical grid coordinates. |
230 |
|
o pkg/gmredi,ctrl,ecco,autodiff,grdchk and model/src,inc: |
231 |
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- introduce isopycnal diffusion coefficient control. |
232 |
|
o tools/adjoint_options: |
233 |
|
- additional control vector components. |
234 |
|
o pkg/mnc: have mnc create marginally meaning full coordinate variables |
235 |
|
(that is the grid indices) if usingCurvilinearGrid and NOT EXCH2 |
236 |
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o pkg/mypackage: |
237 |
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- add example of read/write pickup for state-var ; |
238 |
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- add entry points to the main code for state-vars diags & write-pickup. |
239 |
|
o pkg/exf: rewrite of exf_getffieldrec.F to properly deal with year |
240 |
|
transitions for useExfYearlyFields |
241 |
|
- add new subroutine that determines the file to read from for |
242 |
|
use*YearlyFields = .TRUE. and .FALSE. |
243 |
|
- add a verification experiment to global_with_exf that tests |
244 |
|
useExfYearlyFields with USE_EXF_INTERPOLATION defined |
245 |
|
o pkg/obcs/exf: add useOBCSYearlyFields (=.FALSE.) to obcs with exf in |
246 |
|
analogy to useExfYearlyFields; rearrange obcs_prescribe_read: two new |
247 |
|
subroutines (which could be generated from a template, because they are |
248 |
|
almost identical), for now they are included in obcs_prescribe_read.F for |
249 |
|
simplicity |
250 |
|
o pkg/exf: |
251 |
|
- add a little more diagnostic to exf_interp_read (in analogy to |
252 |
|
mds_read_field, can be turned off with debugLevel < debugLevA=1) |
253 |
|
- improve vectorizability of exf_interp for TARGET_NEC_SX, makes code |
254 |
|
ugly but fast by unrolling short inner loops, inserting a unroll=8 |
255 |
|
directive in routine lagran, and splitting a loop and making do while the |
256 |
|
outermost loop (the latter requires the intoduction of index arrays) |
257 |
|
o pkg/obcs: replace obcs_apply_area/heff/hsalt/hsnow with obcs_apply_seaice |
258 |
|
o pkg/seaice: moved DIFFERENT_MULTIPLE from seaice_model to seaice_dynsolver |
259 |
|
http://forge.csail.mit.edu/pipermail/mitgcm-devel/2008-January/003173.html |
260 |
|
o verification/seaice_obcs: updated for restart test and latest options |
261 |
|
o pkg/seaice: add a new flag SEAICEuseTEM to use a slightly different |
262 |
|
ice rheology (so-called truncated ellipse, that gets rid of tensile stress); |
263 |
|
for now this is only available for the C-grid code and also within |
264 |
|
#ifdef SEAICE_ALLOW_TEM, because this option may slow down the EVP code |
265 |
|
|
266 |
|
checkpoint59m |
267 |
|
o pkg/seaice: use different time constant for melting (SEAICE_gamma_t) |
268 |
|
and freezing (SEAICE_gamma_t_frz) ice due to mixed layer temperature |
269 |
|
o gad_som : fix flux output (& diagnostics) to have same units as other |
270 |
|
advection scheme fluxes (was previously multiplied by deltaT). |
271 |
|
o added verification/seaice_obcs both to test seaice open boundaries |
272 |
|
and to provide an example matlab scrpt for generating them |
273 |
|
o added verification/lab_sea/input.salt_plume for testing pkg/salt_plume |
274 |
|
o pkg/salt_plume: clean up salt_plume_frac.F to |
275 |
|
remove redundancy in PlumeMethod 1 and 4 |
276 |
|
o pkg/kpp: added saltplume diagnostics |
277 |
|
o pkg/obcs and pkg/seaice: |
278 |
|
- do not set uice and vice to zero when OB*icefile are unspecified |
279 |
|
- OBCS_SEAICE_AVOID_CONVERGENCE is undefined by default |
280 |
|
- moved seaice tracer obcs after call to seaice_growth |
281 |
|
o pkg/salt_plume: added various options for salt plume depth |
282 |
|
criterion and for vertical distribution of the salt |
283 |
|
|
284 |
|
checkpoint59l |
285 |
|
o pkg/ptracers: new version of ptracers pickup: |
286 |
|
read meta file and write only fields which are needed to restart. |
287 |
|
( same logic as main pickup file ; also using pickupStrictlyMatch ) |
288 |
|
o pkg/seaice: |
289 |
|
- add timescale for melting due to warm mixed layer as a means of |
290 |
|
setting SEAICE_availHeatFrac more conveniently |
291 |
|
- add a CPP-flag/runtime parameter check for flooding algorithm |
292 |
|
- reformulated availHeat in seaice_growth.F to be independent of AREA |
293 |
|
o change units attribute of EmPmR netcdf variables to kg/m^2/s to reflect recent |
294 |
|
unit changes |
295 |
|
o pkg/obcs: added OBCS_SEAICE_AVOID_CONVERGENCE constraint |
296 |
|
o cg2d.F: add 3 compiler directives that speed up this routine by 30% on a NEC |
297 |
|
SX vector computer. |
298 |
|
o pkg/seaice: |
299 |
|
- removed SEAICE_FFIELDS.h and seaice_get_forcing.F |
300 |
|
seaice forcing fields can now be read only through pkg/exf |
301 |
|
- removed some unused halos |
302 |
|
o no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP |
303 |
|
o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL |
304 |
|
or U/VICE from U/VWIND before computing U/VSTRESS |
305 |
|
|
306 |
|
checkpoint59k |
307 |
|
o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between |
308 |
|
dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. |
309 |
|
o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
310 |
|
all experiments pass when compile with un-initialised var. checking option. |
311 |
|
o added pkg/salt_plume |
312 |
|
o script to test restart (for now, in MITgcm_contrib/jmc_script) |
313 |
|
o pkg/seaice: new read/write pickup version. |
314 |
|
read meta file and write only fields which are needed to restart. |
315 |
|
( same logic as main pickup file ; also using pickupStrictlyMatch ) |
316 |
|
o pkg/seaice: fix bug in seaice_ocean_stress (call of seaice_calc_strainrates) |
317 |
|
o lab_sea.hb87: modify the domain & update output.hb87.txt : |
318 |
|
lat-long grid & no-slip BC in seaice-dynamics produce different sigma12 |
319 |
|
at j=1 & j=Ny+1 : this case is not treated correctly in the restart |
320 |
|
process. Fixed here by closing the domain at the Northern boundary. |
321 |
|
o pkg/rw: cleaning-up: call directly new MDSIO S/R MDS_READ/WRITE_FIELD. |
322 |
|
o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing |
323 |
|
a set of consecutive levels in/from a 3-D array. |
324 |
|
o pkg/ptracers: |
325 |
|
use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
326 |
|
to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
327 |
|
|
328 |
|
checkpoint59j |
329 |
|
o in pkgs: dic, obcs, offline, rbcs: |
330 |
|
standard way to compute coeff. for time interpolation between 2 time reccords |
331 |
|
which retains full precision (& make results less dependent on compiler). |
332 |
|
update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo. |
333 |
|
o pkg/cfc: if compiled with exf and seaice, cfc now can use fields from those |
334 |
|
packages instead of reading ice cover and wind speed separately |
335 |
|
o split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h |
336 |
|
(keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad |
337 |
|
to allow to compile customized code before the update) |
338 |
|
o cleaning-up: |
339 |
|
- fix CPP instruction syntax in pkg/obcs |
340 |
|
- replace (some) call to MDSIO S/R with call to RW interface S/R ; and |
341 |
|
add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio) |
342 |
|
- fix some threads issue in IO parts. |
343 |
|
o pkg/dic: |
344 |
|
- add tons of "_d 0" (--> much better testreports !) |
345 |
|
and then update outputs of tutorial_global_oce_biogeo |
346 |
|
o pkg/mom_fluxform: |
347 |
|
add a special version of momentum advection intended to conserve momentum |
348 |
|
next to a bathymetry step or a coastline edge. (default = off = #undef) |
349 |
|
o new read/write pickup version: |
350 |
|
- for now, only implemented for main (mdsio) pickup file. |
351 |
|
- write out only what is needed to restart; merge pickup_nh , pickup_ph |
352 |
|
and main pickup together. |
353 |
|
- read meta file; read only what is needed to restart; stop if a field |
354 |
|
is missing (if pickupStrictlyMatch=T, = the default) or try to restart |
355 |
|
if it make sense (even if the restart is not perfect). |
356 |
|
- if no meta file, assume that pickup to read corresponds exactly to |
357 |
|
a pickup that would currently be written. |
358 |
|
- read pickup written in the old format (until checkpoint59i) if it |
359 |
|
recognizes an old meta file (no field-list). |
360 |
|
- add a meta file in exp. which starts from a pickup: 2 cases: |
361 |
|
a) minimal meta file (with just file precision) + pickupStrictlyMatch=F |
362 |
|
e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta |
363 |
|
b) a meta file describing the content of the associated pickup file |
364 |
|
e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta |
365 |
|
o pkg/mdsio & pkg/rw: |
366 |
|
- new routine to read a meta file ; new set of routine to read |
367 |
|
Multiple-fields file (with meta file). |
368 |
|
o added open boundary conditions capability for seaice |
369 |
|
HSNOW, HSALT, UICE, and VICE |
370 |
|
|
371 |
|
checkpoint59i |
372 |
|
o adjoint: |
373 |
|
* fix multiDimAdvection adjoint |
374 |
|
(partial recomputation problem by TAF for fVerT(:,:,kDown) |
375 |
|
and comlev1 size definition (maxpass vs. max. number of tracers) |
376 |
|
* verification/global_ocean.90x45x15 adjoint now tests |
377 |
|
NLFS and multiDimAdvection using DST3 (=30) |
378 |
|
* verification/lab_sea now tests multiDimAdvection using DST3 (=30) |
379 |
|
o pkg/kpp: add "_d 0" to real constant (if missing); |
380 |
|
update output of exp: natl_box (10.digits); vermix (std, 7.digits) |
381 |
|
and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits). |
382 |
|
o prepare for "clever pickup" implementation: add new header file "RESTART.h" |
383 |
|
for internal parameters related to restart process (formerly from PARAMS.h) |
384 |
|
and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2. |
385 |
|
o more standard interface to {PKG}_WRITE_PICKUP with pickup suffix passed |
386 |
|
as argument. (only atm2d & obcs write_pickup have not yet been updated) |
387 |
|
o pkg/monitor: |
388 |
|
- use GLOBAL_SUM_TILE instead of _GLOBAL_SUM |
389 |
|
- fix mon_stats_rs (statistics over the full domain, even where field is zero) |
390 |
|
- account for deep Atmosphere factor and density factor (anelastic) |
391 |
o added open boundary conditions capability for seaice HEFF and AREA |
o added open boundary conditions capability for seaice HEFF and AREA |
392 |
o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) |
o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) |
393 |
thermodynamics |
thermodynamics |
395 |
of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, |
of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, |
396 |
so that now the conservative form is tested |
so that now the conservative form is tested |
397 |
- add a few comments |
- add a few comments |
398 |
o add missing cvs $Header$ or $Name$ in eesupp/*, pkg/* & verification/code* |
o add missing cvs Header: or Name: in eesupp/*, pkg/* & verification/code* |
399 |
o add a little bit of code to gad_os7mp_adv_?.F to help vectorization |
o add a little bit of code to gad_os7mp_adv_?.F to help vectorization |
400 |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
401 |
multidim-advection, for scheme 2 they are not filled) and transports, |
multidim-advection, for scheme 2 they are not filled) and transports, |
402 |
thermodynamic growth rates |
thermodynamic growth rates |
403 |
o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but |
o change units of EmPmR (inside the code, + within coupling interface) |
404 |
leave input file unchanged. Affects results @ truncation level (cg2d match) |
from m/s to kg/m2/s (mass flux) but leave input file unchanged. |
405 |
and update output of experiments: lab_sea(6), global_ocean.90x40x15(10), |
Affects results @ truncation level (cg2d match) and update output of |
406 |
|
experiments: lab_sea(6), global_ocean.90x40x15(10), |
407 |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
408 |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
409 |
|
Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
410 |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
411 |
|
|
412 |
checkpoint59h |
checkpoint59h |