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$Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.53.4.17 2003/02/13 23:56:23 heimbach Exp $ |
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|
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Notes on tags used in MITgcmUV |
4 |
============================== |
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|
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untagged |
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o adjoint-friendly modifications to pkg/seaice |
8 |
|
9 |
ecco_c44_e26 |
10 |
o Merging pkg/exf and pkg/seaice from cvs tag ecco_ice2 |
11 |
o exf: Modifications to correctly handle evap field for adjoint |
12 |
o grdchk: |
13 |
Added code to perform gradient checks for bulk formulae/atmos. state |
14 |
(atemp, aqh, uwind, vwind). |
15 |
NOTE: |
16 |
This package is out of synch with c48 package. |
17 |
The latter also has the tangent linear gradient checks. |
18 |
Need to be merged. |
19 |
o verification/natl_box_adjoint: |
20 |
* added new setup: code_bulk/, input_bulk, results_bulk |
21 |
(Experiment 2, described in README) |
22 |
uses bulk formulae and atmos. state as control instead of |
23 |
air-sea fluxes. |
24 |
Performs gradient checks for first 4 elements of atemp control. |
25 |
* changed standard verification to perform |
26 |
gradient checks on first 4 elements on hflux control. |
27 |
* gmredi switched off (will come after merge with c48). |
28 |
|
29 |
ecco_c44_e25 |
30 |
o Merging some GM changes from main trunk (c47) to ecco-branch. |
31 |
o Updating verif. natl_box_adjoint with GMRedi. |
32 |
o Adding setup with explicit differentiaton of pressure solver. |
33 |
o Bug fix: missing OBCS_OPTIONS.h for sponge layer code. |
34 |
o (Re-?) Commiting old bug fixes in kpp to ecco-branch |
35 |
(kpp_calc.F, kpp_routines.F) |
36 |
o exf: |
37 |
updated external forcing package |
38 |
- cleaned old exfa stuff |
39 |
- bug fixes |
40 |
(missing OBCS_OPTIONS.h in two routines) |
41 |
- enable easy to use "no forcing". |
42 |
- added exf I/O for atmospheric loading |
43 |
- added exf I/O for runoff data |
44 |
- transfered scaling between exf <-> MITgcm to exf namelist |
45 |
|
46 |
ecco_c44_e24 |
47 |
o modifications to gradient check package (Martin Losch) |
48 |
- enable centered differences |
49 |
- modified format of standard output |
50 |
o bug fix for nwettile contents |
51 |
so far assumed global sum in first entry (1,1,k), |
52 |
needed for global control vector |
53 |
-> introduced new variable nwet[c/w/s]global(nr) |
54 |
o shifts of calls to cal/exf package to be accessible |
55 |
in MITgcm stand-alone |
56 |
o shifted packages_init_variables before convective_adjustment_ini |
57 |
(corresponding update of TAF tape initialisation). |
58 |
o removed auxiliary field in impldiff |
59 |
(caused numerical differences for GMRedi cases) |
60 |
o updated obcs control part (G. Gebbie) |
61 |
o removed some f90 comments ("!") |
62 |
o Bug fixes and updates in cost package |
63 |
* cost_final: correct multiplier mult_tauv, mult_sflux |
64 |
* cost_hyd: added call cost_ssh |
65 |
* cost_init_barfiles.F: replaced arrays by tmpfld's |
66 |
* cost_readtopexmean.F: ersmask -> tpmeanmask |
67 |
* cost_weights.F: corrected wtheta[2], wsalt[2] |
68 |
o cleaned exchanges in cg2d.F |
69 |
|
70 |
ecco_c44_e23 |
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merged patches between release1_p1 and release1_p2: |
72 |
o fixed array boundary problem for adjoint |
73 |
(related to partial recomputation within subroutine |
74 |
related to dynamics -> calc_viscosity -> mom_... |
75 |
o fixed recomputation in thermodynamics |
76 |
o prepare (but not complete) recomputation problem in impldiff |
77 |
o fixed problem for adjoint of global_max |
78 |
o switched off sponge layer code in external_forcing |
79 |
Bug fix in ctrl_mask_set_yz (spotted by G. Gebbie) |
80 |
|
81 |
ecco_c44_e22 |
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o Finally, the merges with the Scripps cost function terms: |
83 |
Various additions, modifications, quality checks. |
84 |
o Plus: Included switch ALLOW_AUTODIFF_MONITOR to handle |
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monitoring of adjoint state. |
86 |
o Plus: removed comm_stats, ini_communication_patterns from diff. list |
87 |
(no more need to "keep" MPI headers for adjoint generation) |
88 |
o Plus: exf changes: |
89 |
o added run-off routine |
90 |
o additional storing needed for ustress,vstess |
91 |
because of state-dependent quality check |
92 |
o added missing initialisations |
93 |
o Plus: genmake with MAKEDEPEND variable was still missing in ecco-branch |
94 |
NB: - verification/natl_box_adjoint/ 240 steps run |
95 |
* looks ok under Linux (twain.lcs.mit.edu) |
96 |
* looks ok on MIT SUN's (fjord.mit.edu) |
97 |
* NaN in reverse mode on Scripps SUN's at iter=214 |
98 |
* NaN in reverse mode on IBM SP3 (BlueHorizon) at iter=204 |
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- 1 year forward int. global 2x2 deg. produces similar cost functions |
100 |
* all cost terms of new code are slightly smaller (0.5 to 3%). |
101 |
|
102 |
ecco_c44_e21 |
103 |
o reversed order of ctrl/cost initialisation |
104 |
o gmredi_slope_psi.F: Inconsistent types in MIN/MAX expressions |
105 |
o modified to enable ctrl field swapping |
106 |
o bug fix for global sum of ncvarlength in ctrl_init |
107 |
o no more call to ctrl_unpack from ctrl_init |
108 |
o no more write of ctrl vector in ctrl_pack |
109 |
however, init. of control vector from ctrl_unpack |
110 |
o various bug fixes & consistent nobcs handling in |
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ctrl_pack/unpack routines (by G. Gebbie) |
112 |
o optim package: Added obcs control part for lsopt I/O |
113 |
(by G. Gebbie) |
114 |
o missing call to obcs_diags |
115 |
o moved calls in packages_init_fixed to packages_readparms |
116 |
because some quantities are needed earlier. |
117 |
|
118 |
ecco_c44_e20 |
119 |
o before major merges from the Scripps setup |
120 |
here are two small updates: |
121 |
- field swapping for surface flux controls enabled |
122 |
(remains t.b.d. for atmos. state plus obcs) |
123 |
- bug fix in active_file.F for xz-/yz- routines |
124 |
- added missing xz-/yz- routines to active_file_ad.F |
125 |
|
126 |
ecco_c44_e19 |
127 |
o merged necessary patches: |
128 |
- AD-related changes for GMRedi |
129 |
- fixes i KPP (delZ -> drF) |
130 |
- hook to OBCS songe layer code in external_forcing |
131 |
- errorMessageUnit non-zero in eeboot.F |
132 |
- included GMREDI, EXACT_CONSERV to natl_box_adjoint verif. |
133 |
|
134 |
ecco_c44_e18 |
135 |
o sponge layer code for obcs was missing |
136 |
- added hook in external_forcing.F |
137 |
- added storing for TAF |
138 |
o new routine cost_init_barfiles to initialise |
139 |
adjoint fields adtbar, adsbar, adpsbar |
140 |
(needed in conjunction with corrected ladinit for active I/O) |
141 |
o cleaned up and corrected order in packages_readparms, ecco_readparms |
142 |
o corrected and simplified weights for obcs controls |
143 |
- weight fields simplified |
144 |
- bug fix in ctrl_pack |
145 |
- no more write of control vector in ctrl_pack |
146 |
o i/j index bug fixes in cost_ssh_mean |
147 |
|
148 |
ecco_c44_e17 |
149 |
o bug fixes in cost package |
150 |
* wrong identifier for active I/O of monthly mean psbar |
151 |
(cost_averagesfields, cost_ssh) xx_psbar_dummy |
152 |
* cleaned all identifier for active I/O of monthly fields |
153 |
* wrong ladinit in various cost routines |
154 |
o merge with interval (chkpt44c_post - chkpt44d_post) |
155 |
* added missing EXCLUDE_MONITOR flags |
156 |
* changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
157 |
(incompatible typ in MIN/MAX expressions caused problems |
158 |
on IBM SP3) |
159 |
* in genmake added variable MAKEDEPEND |
160 |
plus resetting for case SunOS |
161 |
added timer_stats.c routine for IBM SP3 |
162 |
* removed variables in dynamics |
163 |
|
164 |
ecco_c44_e16 |
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o new ECCO checkpoint, the first since ecco_c43_e15 |
166 |
which is branched from MITgcm. |
167 |
All changes were merged in between (see ecco-branch-mod? tags). |
168 |
o last changes: |
169 |
* assuming path for TAF and TAMC are known (e.g. in $path) |
170 |
* genmake: |
171 |
- added tools/xmakedepend to circumvene shortcoming of |
172 |
SUN's makedepend (size too small) |
173 |
- invoking ../tools/xmakedepend instead of makedepend |
174 |
- changed compiler flags for case SunOS |
175 |
|
176 |
ecco-branch-mod5 |
177 |
o mod's to reproduce open boundary run |
178 |
o enable field swapping for OB's and climatology |
179 |
o update store directives for OB control |
180 |
o added option ALLOW_OBCS_PRESCRIBE |
181 |
o call of getobcs now out of obcs_calc (param. list modified) |
182 |
|
183 |
ecco-branch-mod4 |
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o this is the second part of changes necessary to reconcile |
185 |
the natl_box_adjoint verification (with and without grdchk). |
186 |
>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
187 |
>>>!!! AND ecco-branch-mod4 !!!<<< |
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>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
189 |
- genmake: removed $S64 overwrite for case SunOS |
190 |
- pkg/exf: update and corrections for field swapping and obcs |
191 |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
192 |
harmonized between ECCO and MITgcm |
193 |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
194 |
updated checkpointing_lev... lists for obcs |
195 |
- model/src: minor changes in forward_step, plot_field |
196 |
- pkg/mdsio: added mdsio_gl_slice |
197 |
|
198 |
ecco-branch-mod3 |
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o this is the first part of changes necessary to reconcile |
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natl_box_adjoint verification (with and without grdchk). |
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This set of changes is relevant for ECCO only. |
202 |
The next set/tag of changes (ecco-branch-mod4) |
203 |
should be merged into the main trunk. |
204 |
- update some options |
205 |
- parameter lists of ecco_the_model_main and ecco_the_main_loop |
206 |
differed from those of the MITgcm counterparts. |
207 |
|
208 |
ecco-branch-mod2 |
209 |
o update ecco-branch-mod1 to checkpoint44 |
210 |
o exclude from updates: |
211 |
- verification/ |
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- adjoint/ |
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- pkg/cost |
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- pkg/ctrl |
215 |
- pkg/ecco |
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- pkg/obcs |
217 |
- model/src/the_model_main.F |
218 |
- model/src/the_main_loop.F |
219 |
|
220 |
checkpoint44 |
221 |
o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
222 |
o fix bug in mom_vi_del2uv |
223 |
o added some stuff for AD |
224 |
|
225 |
ecco-branch-mod1 |
226 |
o based on c43 |
227 |
o replaced packages cost, ctrl, ecco, obcs |
228 |
o removed MITgcm verif.'s, added ECCO verif.'s |
229 |
o added lsopt, optim for line search optimization. |
230 |
|
231 |
checkpoint43 |
232 |
o added two new advection tests |
233 |
o added global 4x4 degree ocean test |
234 |
o added test of H&S94 with free surface on cube |
235 |
o some final mods for gradient check, adjoint,... |
236 |
|
237 |
checkpoint42 |
238 |
Fixed AD-related problems: |
239 |
o Store directives up-to-date with re-arranged Adams-Bashforth |
240 |
(mainly thermodynamics.F) |
241 |
o New store directives for multi-dim. advection schemes |
242 |
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
243 |
* new common block and key passkey |
244 |
(mainly gad_advection.F) |
245 |
o Modified store directives for split of dynamics/thermodynamics |
246 |
for the case ALLOW_KPP |
247 |
o Cleaned argument list for timestep_tracer.F |
248 |
|
249 |
checkpoint41 |
250 |
o re-formatted/added comments in prologues of key subroutines |
251 |
to work with protex |
252 |
|
253 |
checkpoint40 |
254 |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
255 |
o added FLT (floats) package from Arne along with demo. experiment |
256 |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
257 |
implementation of forward-in-time forcing terms |
258 |
o more mods for non-linear free-surface including new variable |
259 |
o modified multi-dim method to work on cube |
260 |
o bug fix in KPP (from DM) |
261 |
|
262 |
checkpoint40pre9 |
263 |
o added DST advection schemes |
264 |
o fix MPI bug on SGI's |
265 |
o modifications for non-linear free-surface |
266 |
o fixed conditionals for fixed flow/passive tracer only mode |
267 |
o added tension/strain form of stress tensor |
268 |
o changes to commenting of arguments for TAF/TAMC |
269 |
o added/updated many matlab scripts |
270 |
o added multi-dimensional advection method for tracers |
271 |
|
272 |
checkpoint40pre8 |
273 |
o new package rw/ |
274 |
Added method for dumping intermediate local arrays: |
275 |
mdsio_writetile - same as mdsio_writefield except works from inside |
276 |
bi,bj loop |
277 |
mdsio_writelocal - same as mdsio_writetile except works for local |
278 |
arrays |
279 |
write_local_r? - higher-level wrapper for mdsio_writelocal |
280 |
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
281 |
Example given at end of mom_vecinv.F that dumps some local arrays. |
282 |
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
283 |
control flux-form versus vector invariant code. |
284 |
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
285 |
or genmake -DISABLE ... |
286 |
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
287 |
(additional storing is now needed for case vecinv; |
288 |
currently nothing implemented to switch this storing off |
289 |
in case fluxform is used since no CPP flag available). |
290 |
|
291 |
checkpoint40pre7 |
292 |
o bug fix in dynamics.F |
293 |
calc_viscosity called before k=1,Nr loop. |
294 |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
295 |
o cleaned initialisations in ctrl_map_ini |
296 |
related to TAF |
297 |
|
298 |
checkpoint40pre6 |
299 |
o split dynamics into thermodynamics & dynamics |
300 |
o corresponding split of calc_diffusivity into |
301 |
calc_diffusivity, calc_viscosity |
302 |
(kpp_calc_diff, kpp_calc_visc). |
303 |
o Added diffkr, kapgm to control variables |
304 |
o bug fix in gmredi_slope_limit for ldd97 |
305 |
|
306 |
checkpoint40pre5 |
307 |
o proper initialization of Adams-Bashforth time stepping |
308 |
+ uses forward step for very first step of model (iter=0) |
309 |
o re-generated *all* output since almost all output is modified by this |
310 |
change (sorry but we've been putting this one off for about 2 years) |
311 |
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
312 |
*not* regenerated since they are already out of date and I don't |
313 |
want to create the impression that they are suddenly working. |
314 |
o removed KAP stuff for DEC's |
315 |
o modified/added many .cvsignore files in */code and */input |
316 |
o added new expt "solid-body.cs-32x32x1" |
317 |
+ this uses an alternative form of ini_curvilinear_grid.F which |
318 |
is not necessarily any better than the current one... |
319 |
|
320 |
checkpoint40pre4 |
321 |
o added re-initialisations of utrans,vtrans,rtrans in |
322 |
calc_common_factors which are crucial for TAF. |
323 |
o extended iMin,jMin range for calc_common_factors, |
324 |
calc_diffusivity |
325 |
o added option ALLOW_PASSIVE_TRACER |
326 |
o a few minor updates and fixes |
327 |
|
328 |
checkpoint40pre3 |
329 |
o created calc_gtr1.F for gad package |
330 |
o split the_main_loop and re-introduced forward_step |
331 |
o some recomputations of nIter0 for TAMC |
332 |
|
333 |
checkpoint40pre2 |
334 |
o Updated to latest branch of AJA, JMC |
335 |
o Added gradient check package |
336 |
o Added routines for passive tracer handling |
337 |
o Added carbon sequestration sensitivity experiment |
338 |
|
339 |
checkpoint39 |
340 |
o Modifications and fixes to support TAMC |
341 |
(mainly missing or wrong directives) |
342 |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
343 |
in addummy_in_stepping |
344 |
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
345 |
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
346 |
o Included following packages: |
347 |
cal: calendar |
348 |
exf: external forcing |
349 |
ecco: essential routines to control use of cal, exf |
350 |
(NB: this is not the full ECCO environment) |
351 |
o disabled some packages by default in genmake |
352 |
|
353 |
checkpoint38 |
354 |
o see notes_c37_adj.txt |
355 |
o corrected wrong layer index in external_forcing_t |
356 |
o replaced the_main_loop/forward_step by the_main_loop |
357 |
o removed forceoutput from write_state |
358 |
(replaced criteria for initial/final state) |
359 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
360 |
|
361 |
checkpoint37 |
362 |
o mdsio.F routine split and packaged in pkg/mdsio |
363 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
364 |
used unless genmake -disable=mdsio) |
365 |
o allow a more precise surface-geopotential gradient for the atmosphere |
366 |
taking into account the change in space of Alpha (=1/rho) at the surface. |
367 |
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
368 |
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
369 |
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
370 |
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
371 |
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
372 |
o Time-Average diagnostics defined as a pseudo package "timeave". |
373 |
o pickup files : old pickup (before c35) did not work with new code (c35 |
374 |
and after) unless activating 2 commented lines in initialise-varia. |
375 |
o Non-Hydrostatic pickup file Pb fixed. |
376 |
o bug with Rigid-lid version (since c35) fixed. |
377 |
|
378 |
checkpoint36 |
379 |
o implement Crank-Nickelson barotropic time-stepping |
380 |
o recover Time-Average diagnostics |
381 |
o fix Pb in checkpoint (PR#19) |
382 |
o AIM become a standard package ; clean unused CPP_kees |
383 |
|
384 |
checkpoint35 |
385 |
o subtantial rewrite of dynamics.f |
386 |
o allows staggered time-stepping |
387 |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
388 |
o added bottom drag (linear + quadratic) |
389 |
|
390 |
checkpoint34 |
391 |
o Modified exchange routines for correct reverse simulation. |
392 |
o Added verification output to comply with bug fix in impldiff.F |
393 |
as of c33 (exp2, natl_box). |
394 |
o Corrected store directives in dynamics.F |
395 |
o Corrected array boundaries in impldiff.F |
396 |
o Corrected array dimensions in gmredi. |
397 |
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
398 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
399 |
o Added mdsio_gl.F for ECCO purposes. |
400 |
|
401 |
checkpoint33 |
402 |
o Fixed bug in lower BC in impldiff.F |
403 |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
404 |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
405 |
- Removed verification/natl_box/code/external_fields_scale.F |
406 |
(did not differ from that in model/src) |
407 |
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
408 |
(see FFIELDS.h for description) |
409 |
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
410 |
kpp_calc.F and kpp_transport_t.F |
411 |
- Removed model/src/external_fields_scale.F and calls to it |
412 |
- verification/natl_box uses flux data with "atmospheric" sign so |
413 |
a special version of external_fields_load.F is used to |
414 |
change the data as it's read in. This way, the arrays |
415 |
have the right units and signs at all times tha a user could |
416 |
possibly use them. |
417 |
o Corrected genmake to delete a temporary file during configuration |
418 |
|
419 |
checkpoint32 |
420 |
o Scaling of forcing fields moved from external_forcing.F to |
421 |
external_fields_scale.F, called directly after loading fields. |
422 |
o Surface relaxation terms added to surface tendency fields in |
423 |
extra subroutine. |
424 |
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
425 |
fields. |
426 |
o Changes in GMRedi to comply with packaging structure. |
427 |
o Modifications and bug fixes in KPP package. |
428 |
o Verification experiment for KPP added (verification/nat_box/) |
429 |
|
430 |
checkpoint31 |
431 |
o Packages interface brought in line with defined standard |
432 |
-> new routines packages_...F |
433 |
-> changes in initialise_fixed.F, initialise_varia.F |
434 |
-> enables initialisation interface for ECCO package |
435 |
o Rescaling of external forcing fields immediately after read |
436 |
(removed from external_forcing.F) |
437 |
-> new: surface_fields_scale.F |
438 |
-> affects ini_foorcing.F, external_fields_load.F |
439 |
o Computation of surface tendencies before tendency updates. |
440 |
-> new: external_forcing_surf.F |
441 |
o Change of variable names useGMRedi, useKPP, useECCO |
442 |
o Further changes in dynamics.F, impldiff.F for TAMC |
443 |
o Tested for experiments 0, 2, 4. |
444 |
- not yet tested for GMRedi. |
445 |
- not yet tested for KPP. |
446 |
|
447 |
checkpoint30 |
448 |
o Updates for OBCs |
449 |
o New experiment for test OBCs (internal_wave) |
450 |
o New output.txt in verification/exp4/results/ |
451 |
o Updates for KPP: calculation of viscosity corrected, new variables |
452 |
kpp_dumpFreq and kpp_taveFreq |
453 |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
454 |
and entry for T90 in genmake |
455 |
|
456 |
checkpoint29 |
457 |
o packaged KPP and GM/Redi |
458 |
|
459 |
checkpoint28 |
460 |
o Corrected initialization of hFacMin for difference vertical coordinates |
461 |
o Modified calculation of partial cell thickness to more robust algorithm |
462 |
o config_summary.F: replaced write_1D_... by write_0D_... |
463 |
read_write.F: added subroutines write_0D_... |
464 |
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
465 |
included some initialisations required for TAMC. |
466 |
o routine calc_isoslopes: modified sqrt computation to make it |
467 |
differentiable for zero argument. |
468 |
o routines dynamics, impldiff: |
469 |
included store directives and tape key computations required for TAMC. |
470 |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
471 |
|
472 |
checkpoint27 |
473 |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
474 |
formulation works properly with variable resolution. |
475 |
o restructured the calling tree between the_model_main() and dynamics() |
476 |
o split initialise() into initialise_fixed() and initialise_varia() |
477 |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
478 |
in new routine ini_psurf() |
479 |
|
480 |
checkpoint26 |
481 |
o moved some #ifdef in optional routines to encompass everything |
482 |
except the argument declarations. This was using up some memory. |
483 |
o fixed macros like _ADT to work with both versions of Linux cpp |
484 |
o cleaned up some unused and uninitialized variables |
485 |
(helps when debugging with strict compile options) |
486 |
o split up CPP_EEOPTIONS.h into options and macros |
487 |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
488 |
o patch for 2 processor JAM mode |
489 |
|
490 |
checkpoint25 |
491 |
o updates for OBCs and NH |
492 |
o dramatically reduced memory usage |
493 |
o added "JAM" routines for use on Artic network |
494 |
o parameterization of convection by implicit vertical diffusion |
495 |
o added a diagnostic of convective index |
496 |
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
497 |
(this is was partly for OBCs and NH but also in anticipation of |
498 |
an explicit free-surface option) |
499 |
o initial state input files for U and V |
500 |
|
501 |
checkpoint24 |
502 |
o Removed some spurious "REAL"s |
503 |
o Updated KPP to latest version from JPL |
504 |
o Added a COS(latitude) in horizontal viscosity |
505 |
|
506 |
checkpoint23 |
507 |
o Added del^4 diffusion for salt and temperature |
508 |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
509 |
|
510 |
checkpoint22 |
511 |
o Made many small changes: implicit none, format(i5), etc... |
512 |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
513 |
|
514 |
checkpoint21 |
515 |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
516 |
o Split-up mid-level I/O routines |
517 |
o Updated input data for experiments 0,1,2,4 and 5 |
518 |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
519 |
|
520 |
checkpoint20 |
521 |
o Tidied up open-boundaries some more |
522 |
o Added non-hydrostatic code |
523 |
o Fixed some input data |
524 |
o Modified MPI start-up to work in "coupled" context. |
525 |
|
526 |
checkpoint19 |
527 |
o Tidied up directory structure for verification experiments. |
528 |
o Added new code for open boundaries. |
529 |
o Corrected advective terms near boundaries. |
530 |
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
531 |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
532 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
533 |
|
534 |
checkpoint18 |
535 |
o Further changes for optional code generation with |
536 |
CPP - ugh! |
537 |
|
538 |
checkpoint17 |
539 |
o Beginning to incorporating modularity |
540 |
for supporting atmos. and ocean configs. |
541 |
o Small changes for TAMC complinace |
542 |
o New ultra simple test case. Barotropic box |
543 |
configuration "exp0". |
544 |
|
545 |
checkpoint16 |
546 |
o Minor changes to exchange routines to support |
547 |
accumulation in reverse mode. Adjoint of an |
548 |
assignment is an addition. |
549 |
o Changes to support compilation by TAMC (LR(1) |
550 |
syntax) and by g77 under Linux ( 72 character |
551 |
limit ). |
552 |
|
553 |
checkpoint15 |
554 |
Rewrote exchange routines to allow |
555 |
o General tile <-> tile connectivity. |
556 |
o TAMC reverse mode flag ( is this really needed? ) |
557 |
o Variable width overlap and exchange region widths. |
558 |
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
559 |
shmput/shmget, VIA, SYSV shmem and every other cool |
560 |
communication method. |
561 |
|
562 |
checkpoint14 |
563 |
Consistent isomorphism chages made. These allow dynamical core |
564 |
to support both pressure and meters as a vertical coordinate. |
565 |
|
566 |
checkpoint13 |
567 |
Release which corrects global_max problem and a couple |
568 |
of KGM time-averaging diagnostic errors. Also contains |
569 |
a double-gyre experiment setup as well as the baseline |
570 |
4 degree global template. The double gyre template is |
571 |
organised to allow it to be applied automatically to |
572 |
the baseline configuration. |
573 |
|
574 |
branch-point-rdot |
575 |
A few tidy-ups have been made bt the real point of this |
576 |
check-point (excuse the pun) is to allow a branch to be |
577 |
made for the purposes of adding the rDot alterations. |
578 |
I don't want to commit the rDot to the main-trunk until |
579 |
we've actually tested it... |
580 |
|
581 |
checkpoint12 |
582 |
Tidy up and added generic genmake script (formerly |
583 |
configure script). |
584 |
Released to testers. |
585 |
|
586 |
checkpoint11 |
587 |
Re-arranged initialise() and introduced ini_vertical_grid() |
588 |
and ini_masks_etc(). |
589 |
|
590 |
checkpoint10 |
591 |
Introduced the configure script. |
592 |
Separated out the diags package. |
593 |
Added template for writing time-averages of tile/intermediate quantities. |
594 |
Updated SIZE.h in exp2 and made the data big-endian. |
595 |
|
596 |
checkpoint9 |
597 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
598 |
General tidy-up. |
599 |
SST.bin SSS.bin added to verification/exp2 |
600 |
|
601 |
checkpoint8 |
602 |
Inludes time-dependant forcing and time-averaging. |
603 |
Works at 4x4 and 2.8125x2.8125 global |
604 |
|
605 |
checkpoint7-4degree-ref |
606 |
Branch from checkpoint7. Released for application to |
607 |
global modeling and general modeling - process studies, regional |
608 |
model etc.. |
609 |
Configured for verification/exp2 - 4 degree global, two process. |
610 |
|
611 |
checkpoint7 |
612 |
Created by cnh |
613 |
Simple 4 degree global simulation |
614 |
configuration. |
615 |
Includes climatological wind, |
616 |
hydrography, bathymetry etc |
617 |
Does not include Heat Flux and E-P |
618 |
|
619 |
checkpoint6 |
620 |
Created by cnh |
621 |
merged checkpoint5 with CD and |
622 |
spherical polar code. |
623 |
Still some problems with GM Redi |
624 |
abd full topography. |
625 |
|
626 |
checkpoint5 |
627 |
Created by AJA |
628 |
contains updates to GM Redi |
629 |
and reordered timestepping loop |
630 |
for Implicit Diffusion. |
631 |
|
632 |
checkpoint4 |
633 |
Created by cnh |
634 |
Contains memory saving macros ( _rdxc etc..) for when |
635 |
grid variations are limited. |
636 |
Contains polynomial coeffs for EOS and knudsen program |
637 |
for generation. |
638 |
|
639 |
checkpoint3 |
640 |
Created by cnh |
641 |
Added extra flags for runtime options |
642 |
Added this file |
643 |
Added implicit free-surface |
644 |
Added pre-conditioner |
645 |
Put compare01 into repository ( compare01/... ) |
646 |
Put data and eedata into repository ( verification/exp1 ) |
647 |
|
648 |
checkpoint2 |
649 |
Created by AJA |
650 |
Added GM/Redi |
651 |
|
652 |
checkpoint1 |
653 |
Created by AJA |
654 |
Restructured kloop in dynamics.F |
655 |
Added non-linear EOS |
656 |
|
657 |
baseline |
658 |
Original checked in code |