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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/dic: test for "pickup_dic" file when restarting ; |
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if no pickup-file, can restart with a re-initialised pH (same as it did |
| 9 |
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before) providing pickupStrictlyMatch is set to False. |
| 10 |
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o change argument list of S/R PTRACERS_WRITE_PICKUP & MYPACKAGE_WRITE_PICKUP |
| 11 |
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+ fix call to S/R GGL90_WRITE_PICKUP & DIC_WRITE_PICKUP |
| 12 |
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o add a "warning" (to Error msg file) when an Active Tracer is not using AB-2 |
| 13 |
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and staggerTimeStep is off (needed for stability of Internal-wave dynamics). |
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o move out of PARAMS.h & data the last pieces of old-ptracer code: tauTr1ClimRelax, |
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& lambdaTr1ClimRelax ; put those 2 params in PTRACERS_PARAMS.h & data.ptracers |
| 16 |
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(note: not clear to me what lambdaTr1ClimRelax is still used for ...) |
| 17 |
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o pkg/mom_vecinv: - new parameter "selectVortScheme" to select which |
| 18 |
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scheme to use for vorticty-term ; |
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- compute upwindVorticity=T case within mom_vi_u/v_coriolis_c4.F |
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(with default selectVortScheme, return to original discretisation) |
| 21 |
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- remove weird combination (e.g.: upwindVorticity & highOrderVorticity) |
| 22 |
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o pkg/seaice: add a line to the summary to indicate grid type (B/C) |
| 23 |
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o in mom_calc_visc, fix average value of viscAh_W & viscA4_W next to the |
| 24 |
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bottom ; only used with variable horizontal viscosity and non-hydrostatic. |
| 25 |
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also fix diagnostics VISCAHW & VISCA4W. |
| 26 |
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checkpoint59o |
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o dome/code/obcs_calc.F: avoid division by zero (detected using gfortran). |
| 29 |
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o change the loop ordering in most gad_*_adv_x.F to improve vectorization: |
| 30 |
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move a few statemens out the main loop into separate loops |
| 31 |
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o pkg/shelfice: |
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- sort out freshwater flux; convert freshwater fluxes to mass fluxes |
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(kg/m^2/s), does not break tests, because in verification/isomip, |
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rhoConstFresh=rhoConst (by accident) |
| 35 |
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- rearrange computation of tLoc, sLoc, pLoc to make code more efficient |
| 36 |
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- move S/R find_rho_scalar, pkg/ecco/sw_ptmp.F, pkg/ecco/sw_adtg.F into |
| 37 |
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new file model/src/seawater.F, so that they are available for all pkgs. |
| 38 |
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- convert potential temperature into in-situ temperature. This changes the |
| 39 |
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isomip tests => update tests |
| 40 |
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o add a flag writePickupAtEnd (default=true) to be able to suppress |
| 41 |
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writing a pickup at the last timestep |
| 42 |
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o tools/mpack-1.6 : |
| 43 |
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- disable automake (not working) and autoconf (not needed). |
| 44 |
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- update to version 1.6.4 which fix MD5 code on some 64 bits platforms |
| 45 |
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also cleaner with much less compilation warnings. |
| 46 |
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o pkg/profiles: |
| 47 |
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rename profiles_interp_mean_genericgrid as profiles_interp_mean_gg |
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(for "less than 32 characters name" compiler requirement) |
| 49 |
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o pkg/obcs and pkg/exf: added capability to specify seaice open boundary |
| 50 |
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conditions that have a different sampling frequency than S/T/U/V obcs |
| 51 |
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o pkg/diagnostics (stats-diags): |
| 52 |
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- fix global Min/Max in case 1 processor get only empty tiles |
| 53 |
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o genmake2: replace (4 times) |
| 54 |
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make genmake_tc_1.o >> genmake_warnings 2>&1 |
| 55 |
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with |
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COMM="$CC $CFLAGS -c genmake_tc_1.c" |
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echo $COMM >> genmake_warnings |
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$COMM >> genmake_warnings 2>&1 |
| 59 |
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to make genmake2 always see the value of CC as specified in the optfile. |
| 60 |
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o generic_advdiff: - prather advection scheme (SOM) coded for CS-grid. |
| 61 |
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- add diagnostics for 1srt & 2nd Order moments and sub-grid variance. |
| 62 |
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- modify verification advect_cs test to test SOM-advection on CS-grid. |
| 63 |
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o pkg/ctrl: |
| 64 |
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- Rewrite of ctrl_map_ini_ecco.F, |
| 65 |
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introducing a generic routine (ctrl_map_ini_gen.F). |
| 66 |
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- Modification of ctrl_bound/adctrl_bound handling control vector bounds. |
| 67 |
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| 68 |
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checkpoint59n |
| 69 |
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o pkg/diagnostics: for large number of diagnostics, store diagnostic mate |
| 70 |
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number in dedicate array "hdiag": |
| 71 |
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- new version of S/R DIAGNOSTICS_ADD2LIST : DIAGNOSTICS_ADDTOLIST |
| 72 |
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with 1 more argument (mate number); modify old version DIAGNOSTICS_ADD2LIST. |
| 73 |
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- many small changes (integer format) for large number of diagnostics |
| 74 |
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- start to use DIAGNOSTICS_ADDTOLIST (necessary for diagnostics with |
| 75 |
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a counter mate) in pkg diagnostics, ptracers, thsice & aim_v23. |
| 76 |
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o add parameter rotateGrid and Euler angles EulerPhi/Theta/Psi. For |
| 77 |
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usingSphericalGrid, this allows to define the rotated grid coordinates |
| 78 |
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via phiMin/thetaMin/dxSpacing/dySpacing, etc., but then re-compute the |
| 79 |
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geographical coordinates according to the inverse of the rotation defined |
| 80 |
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by the Euler angles, so that Coriolis parameter and online-interpolation by |
| 81 |
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exf works with the geographical coordinates on XC/YC/XG/YG. |
| 82 |
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Naturally, this feature does not work with all packages, so some |
| 83 |
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combinations are prohibited in config_summary (flt, flt_zonal, ecco, |
| 84 |
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profiles), because there the coordinates are assumed to be regular |
| 85 |
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spherical grid coordinates. |
| 86 |
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o pkg/gmredi,ctrl,ecco,autodiff,grdchk and model/src,inc: |
| 87 |
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- introduce isopycnal diffusion coefficient control. |
| 88 |
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o tools/adjoint_options: |
| 89 |
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- additional control vector components. |
| 90 |
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o pkg/mnc: have mnc create marginally meaning full coordinate variables |
| 91 |
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(that is the grid indices) if usingCurvilinearGrid and NOT EXCH2 |
| 92 |
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o pkg/mypackage: |
| 93 |
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- add example of read/write pickup for state-var ; |
| 94 |
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- add entry points to the main code for state-vars diags & write-pickup. |
| 95 |
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o pkg/exf: rewrite of exf_getffieldrec.F to properly deal with year |
| 96 |
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transitions for useExfYearlyFields |
| 97 |
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- add new subroutine that determines the file to read from for |
| 98 |
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use*YearlyFields = .TRUE. and .FALSE. |
| 99 |
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- add a verification experiment to global_with_exf that tests |
| 100 |
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useExfYearlyFields with USE_EXF_INTERPOLATION defined |
| 101 |
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o pkg/obcs/exf: add useOBCSYearlyFields (=.FALSE.) to obcs with exf in |
| 102 |
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analogy to useExfYearlyFields; rearrange obcs_prescribe_read: two new |
| 103 |
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subroutines (which could be generated from a template, because they are |
| 104 |
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almost identical), for now they are included in obcs_prescribe_read.F for |
| 105 |
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simplicity |
| 106 |
o pkg/exf: |
o pkg/exf: |
| 107 |
- add a little more diagnostic to exf_interp_read (in analogy to |
- add a little more diagnostic to exf_interp_read (in analogy to |
| 108 |
mds_read_field, can be turned off with debugLevel < debugLevA=1) |
mds_read_field, can be turned off with debugLevel < debugLevA=1) |
| 109 |
- improve vectorizability of exf_interp for TARGET_NEC_SX, makes code |
- improve vectorizability of exf_interp for TARGET_NEC_SX, makes code |
| 110 |
ugly but fast (vectorization is not yet complete) |
ugly but fast by unrolling short inner loops, inserting a unroll=8 |
| 111 |
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directive in routine lagran, and splitting a loop and making do while the |
| 112 |
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outermost loop (the latter requires the intoduction of index arrays) |
| 113 |
o pkg/obcs: replace obcs_apply_area/heff/hsalt/hsnow with obcs_apply_seaice |
o pkg/obcs: replace obcs_apply_area/heff/hsalt/hsnow with obcs_apply_seaice |
| 114 |
o pkg/seaice: moved DIFFERENT_MULTIPLE from seaice_model to seaice_dynsolver |
o pkg/seaice: moved DIFFERENT_MULTIPLE from seaice_model to seaice_dynsolver |
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http://forge.csail.mit.edu/pipermail/mitgcm-devel/2008-January/003173.html |
http://forge.csail.mit.edu/pipermail/mitgcm-devel/2008-January/003173.html |
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