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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
| 8 |
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all experiments pass when compile with un-initilised var. checking option. |
| 9 |
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o added pkg/salt_plume |
| 10 |
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o script to test restart (for now, in MITgcm_contrib/jmc_script) |
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o pkg/seaice: new read/write pickup version. |
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read meta file and write only fields which are needed to restart. |
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( same logic as main pickup file ; also using pickupStrictlyMatch ) |
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o pkg/seaice: fix bug in seaice_ocean_stress (call of seaice_calc_strainrates) |
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o lab_sea.hb87: modify the domain & update output.hb87.txt : |
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lat-long grid & no-slip BC in seaice-dynamics produce different sigma12 |
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at j=1 & j=Ny+1 : this case is not treated correctly in the restart |
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process. Fixed here by closing the domain at the Northern boundary. |
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o pkg/rw: cleaning-up: call directly new MDSIO S/R MDS_READ/WRITE_FIELD. |
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o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing |
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a set of consecutive levels in/from a 3-D array. |
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o pkg/ptracers: |
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use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
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to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
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checkpoint59j |
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o in pkgs: dic, obcs, offline, rbcs: |
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standard way to compute coeff. for time interpolation between 2 time reccords |
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which retains full precision (& make results less dependent on compiler). |
| 30 |
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update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo. |
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o pkg/cfc: if compiled with exf and seaice, cfc now can use fields from those |
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packages instead of reading ice cover and wind speed separately |
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o split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h |
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(keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad |
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to allow to compile customized code before the update) |
| 36 |
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o cleaning-up: |
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- fix CPP instruction syntax in pkg/obcs |
| 38 |
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- replace (some) call to MDSIO S/R with call to RW interface S/R ; and |
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add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio) |
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- fix some threads issue in IO parts. |
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o pkg/dic: |
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- add tons of "_d 0" (--> much better testreports !) |
| 43 |
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and then update outputs of tutorial_global_oce_biogeo |
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o pkg/mom_fluxform: |
| 45 |
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add a special version of momentum advection intended to conserve momentum |
| 46 |
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next to a bathymetry step or a coastline edge. (default = off = #undef) |
| 47 |
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o new read/write pickup version: |
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- for now, only implemented for main (mdsio) pickup file. |
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- write out only what is needed to restart; merge pickup_nh , pickup_ph |
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and main pickup together. |
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- read meta file; read only what is needed to restart; stop if a field |
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is missing (if pickupStrictlyMatch=T, = the default) or try to restart |
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if it make sense (even if the restart is not perfect). |
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- if no meta file, assume that pickup to read corresponds exactly to |
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a pickup that would currently be written. |
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- read pickup written in the old format (until checkpoint59i) if it |
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recognizes an old meta file (no field-list). |
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- add a meta file in exp. which starts from a pickup: 2 cases: |
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a) minimal meta file (with just file precision) + pickupStrictlyMatch=F |
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e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta |
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b) a meta file describing the content of the associated pickup file |
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e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta |
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o pkg/mdsio & pkg/rw: |
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- new routine to read a meta file ; new set of routine to read |
| 65 |
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Multiple-fields file (with meta file). |
| 66 |
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o added open boundary conditions capability for seaice |
| 67 |
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HSNOW, HSALT, UICE, and VICE |
| 68 |
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| 69 |
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checkpoint59i |
| 70 |
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o adjoint: |
| 71 |
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* fix multiDimAdvection adjoint |
| 72 |
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(partial recomputation problem by TAF for fVerT(:,:,kDown) |
| 73 |
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and comlev1 size definition (maxpass vs. max. number of tracers) |
| 74 |
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* verification/global_ocean.90x45x15 adjoint now tests |
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NLFS and multiDimAdvection using DST3 (=30) |
| 76 |
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* verification/lab_sea now tests multiDimAdvection using DST3 (=30) |
| 77 |
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o pkg/kpp: add "_d 0" to real constant (if missing); |
| 78 |
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update output of exp: natl_box (10.digits); vermix (std, 7.digits) |
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and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits). |
| 80 |
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o prepare for "clever pickup" implementation: add new header file "RESTART.h" |
| 81 |
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for internal parameters related to restart process (formerly from PARAMS.h) |
| 82 |
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and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2. |
| 83 |
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o more standard interface to {PKG}_WRITE_PICKUP with pickup suffix passed |
| 84 |
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as argument. (only atm2d & obcs write_pickup have not yet been updated) |
| 85 |
o pkg/monitor: |
o pkg/monitor: |
| 86 |
- use GLOBAL_SUM_TILE instead of _GLOBAL_SUM |
- use GLOBAL_SUM_TILE instead of _GLOBAL_SUM |
| 87 |
- fix mon_stats_rs (statistics over the full domain, even where field is zero) |
- fix mon_stats_rs (statistics over the full domain, even where field is zero) |
| 98 |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
| 99 |
multidim-advection, for scheme 2 they are not filled) and transports, |
multidim-advection, for scheme 2 they are not filled) and transports, |
| 100 |
thermodynamic growth rates |
thermodynamic growth rates |
| 101 |
o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but |
o change units of EmPmR (inside the code, + within coupling interface) |
| 102 |
leave input file unchanged. Affects results @ truncation level (cg2d match) |
from m/s to kg/m2/s (mass flux) but leave input file unchanged. |
| 103 |
and update output of experiments: lab_sea(6), global_ocean.90x40x15(10), |
Affects results @ truncation level (cg2d match) and update output of |
| 104 |
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experiments: lab_sea(6), global_ocean.90x40x15(10), |
| 105 |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
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+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
| 107 |
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Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
| 108 |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
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checkpoint59h |
checkpoint59h |
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