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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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o added open boundary conditions capability for seaice HSNOW and HSALT |
o pkg/obcs and pkg/seaice: |
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- do not set uice and vice to zero when OB*icefile are unspecified |
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- OBCS_SEAICE_AVOID_CONVERGENCE is undefined by default |
| 10 |
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- moved seaice tracer obcs after call to seaice_growth |
| 11 |
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o pkg/salt_plume: added various options for salt plume depth |
| 12 |
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criterion and for vertical distribution of the salt |
| 13 |
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checkpoint59l |
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o pkg/ptracers: new version of ptracers pickup: |
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read meta file and write only fields which are needed to restart. |
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( same logic as main pickup file ; also using pickupStrictlyMatch ) |
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o pkg/seaice: |
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- add timescale for melting due to warm mixed layer as a means of |
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setting SEAICE_availHeatFrac more conveniently |
| 21 |
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- add a CPP-flag/runtime parameter check for flooding algorithm |
| 22 |
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- reformulated availHeat in seaice_growth.F to be independent of AREA |
| 23 |
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o change units attribute of EmPmR netcdf variables to kg/m^2/s to reflect recent |
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unit changes |
| 25 |
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o pkg/obcs: added OBCS_SEAICE_AVOID_CONVERGENCE constraint |
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o cg2d.F: add 3 compiler directives that speed up this routine by 30% on a NEC |
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SX vector computer. |
| 28 |
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o pkg/seaice: |
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- removed SEAICE_FFIELDS.h and seaice_get_forcing.F |
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seaice forcing fields can now be read only through pkg/exf |
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- removed some unused halos |
| 32 |
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o no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP |
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o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL |
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or U/VICE from U/VWIND before computing U/VSTRESS |
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checkpoint59k |
| 37 |
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o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between |
| 38 |
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dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. |
| 39 |
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o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
| 40 |
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all experiments pass when compile with un-initialised var. checking option. |
| 41 |
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o added pkg/salt_plume |
| 42 |
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o script to test restart (for now, in MITgcm_contrib/jmc_script) |
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o pkg/seaice: new read/write pickup version. |
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read meta file and write only fields which are needed to restart. |
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( same logic as main pickup file ; also using pickupStrictlyMatch ) |
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o pkg/seaice: fix bug in seaice_ocean_stress (call of seaice_calc_strainrates) |
| 47 |
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o lab_sea.hb87: modify the domain & update output.hb87.txt : |
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lat-long grid & no-slip BC in seaice-dynamics produce different sigma12 |
| 49 |
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at j=1 & j=Ny+1 : this case is not treated correctly in the restart |
| 50 |
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process. Fixed here by closing the domain at the Northern boundary. |
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o pkg/rw: cleaning-up: call directly new MDSIO S/R MDS_READ/WRITE_FIELD. |
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o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing |
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a set of consecutive levels in/from a 3-D array. |
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o pkg/ptracers: |
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use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
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to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
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checkpoint59j |
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o in pkgs: dic, obcs, offline, rbcs: |
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standard way to compute coeff. for time interpolation between 2 time reccords |
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which retains full precision (& make results less dependent on compiler). |
| 62 |
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update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo. |
| 63 |
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o pkg/cfc: if compiled with exf and seaice, cfc now can use fields from those |
| 64 |
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packages instead of reading ice cover and wind speed separately |
| 65 |
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o split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h |
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(keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad |
| 67 |
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to allow to compile customized code before the update) |
| 68 |
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o cleaning-up: |
| 69 |
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- fix CPP instruction syntax in pkg/obcs |
| 70 |
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- replace (some) call to MDSIO S/R with call to RW interface S/R ; and |
| 71 |
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add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio) |
| 72 |
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- fix some threads issue in IO parts. |
| 73 |
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o pkg/dic: |
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- add tons of "_d 0" (--> much better testreports !) |
| 75 |
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and then update outputs of tutorial_global_oce_biogeo |
| 76 |
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o pkg/mom_fluxform: |
| 77 |
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add a special version of momentum advection intended to conserve momentum |
| 78 |
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next to a bathymetry step or a coastline edge. (default = off = #undef) |
| 79 |
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o new read/write pickup version: |
| 80 |
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- for now, only implemented for main (mdsio) pickup file. |
| 81 |
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- write out only what is needed to restart; merge pickup_nh , pickup_ph |
| 82 |
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and main pickup together. |
| 83 |
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- read meta file; read only what is needed to restart; stop if a field |
| 84 |
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is missing (if pickupStrictlyMatch=T, = the default) or try to restart |
| 85 |
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if it make sense (even if the restart is not perfect). |
| 86 |
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- if no meta file, assume that pickup to read corresponds exactly to |
| 87 |
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a pickup that would currently be written. |
| 88 |
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- read pickup written in the old format (until checkpoint59i) if it |
| 89 |
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recognizes an old meta file (no field-list). |
| 90 |
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- add a meta file in exp. which starts from a pickup: 2 cases: |
| 91 |
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a) minimal meta file (with just file precision) + pickupStrictlyMatch=F |
| 92 |
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e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta |
| 93 |
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b) a meta file describing the content of the associated pickup file |
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e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta |
| 95 |
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o pkg/mdsio & pkg/rw: |
| 96 |
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- new routine to read a meta file ; new set of routine to read |
| 97 |
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Multiple-fields file (with meta file). |
| 98 |
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o added open boundary conditions capability for seaice |
| 99 |
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HSNOW, HSALT, UICE, and VICE |
| 100 |
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| 101 |
checkpoint59i |
checkpoint59i |
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o adjoint: |
o adjoint: |
| 130 |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
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multidim-advection, for scheme 2 they are not filled) and transports, |
multidim-advection, for scheme 2 they are not filled) and transports, |
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thermodynamic growth rates |
thermodynamic growth rates |
| 133 |
o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but |
o change units of EmPmR (inside the code, + within coupling interface) |
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leave input file unchanged. Affects results @ truncation level (cg2d match) |
from m/s to kg/m2/s (mass flux) but leave input file unchanged. |
| 135 |
and update output of experiments: lab_sea(6), global_ocean.90x40x15(10), |
Affects results @ truncation level (cg2d match) and update output of |
| 136 |
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experiments: lab_sea(6), global_ocean.90x40x15(10), |
| 137 |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
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+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
| 139 |
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Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
| 140 |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
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checkpoint59h |
checkpoint59h |
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