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revision 1.871 by dimitri, Fri Sep 14 02:07:37 2007 UTC revision 1.892 by jmc, Mon Oct 15 00:30:04 2007 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/monitor:
8      - use GLOBAL_SUM_TILE instead of _GLOBAL_SUM
9      - fix mon_stats_rs (statistics over the full domain, even where field is zero)
10      - account for deep Atmosphere factor and density factor (anelastic)
11    o added open boundary conditions capability for seaice HEFF and AREA
12    o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989)
13      thermodynamics
14      - requires a little reorganization, which affects the testreport results
15        of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment,
16        so that now the conservative form is tested
17      - add a few comments
18    o add missing cvs Header: or Name: in eesupp/*, pkg/* & verification/code*
19    o add a little bit of code to gad_os7mp_adv_?.F to help vectorization
20    o add new diagnostics to seaice: advective, diffusive fluxes (only for
21      multidim-advection, for scheme 2 they are not filled) and transports,
22      thermodynamic growth rates
23    o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but
24      leave input file unchanged. Affects results @ truncation level (cg2d match)
25      and update output of experiments: lab_sea(6), global_ocean.90x40x15(10),
26      global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11)
27      + adjoint results: global_ocean_ebm(11) and lab_sea (12).
28      Next: will retire convertEmP2rUnit (simply using mass2rUnit instead).
29    
30    checkpoint59h
31    o pkg/exf:
32      - improve vectorization by moving if-statement out of loops in
33        exf_mapfields, exf_radiation
34      - exf_bulkformulae.F: introduce 2D fields and vectorize code
35    o pkg/kpp: added the salt plume scheme (ALLOW_SALT_PLUME) to KPP package
36    o testreport:
37      - allow to test for Qnet & SeaIce monitor output; clean-up ALLOW_BULK_OFFLINE
38        monitor & update offline_exf_seaice exp. output.
39      - AD testing: pass/FAIL according to Grad. output accuracy (instead of Cost)
40    o pkg/seaice:
41      - bug fix in the evp solver: boundary conditions were affected be
42        masking of zMax/zMin (changes results)
43      - minor bug fix in boundary conditions in seaice_calc_strainrates
44        (changes results for no_slip)
45      - seaice_lsr.F: make interpolation of eta dependent on boundaries
46      - replace hardcoded lower limit for zeta (zMin) by runtime parameter
47      - add a test to lab_sea, that tests the Hibler and Bryan (1987) ocean
48        stress formulation and no-slip boundary conditions
49    o pkg/ptracers: Temporary fix for PTRACERS_useGMRedi & PTRACERS_useKPP
50      in gad_calc_rhs.F ; add few safety stops in initialisation phase.
51    o pkg/seaice: a first HSALT time stepping equation has been checked in
52    o pkg/seaice: replaced maskW with seaiceMaskU and maskS with seaiceMaskV
53      in seaice_lsr.F; this solves the pkg/seaice-pkg/obcs problem
54      without requiring DO-IF statements
55    o pkg/thsice:
56      use continuous power-law function for partition of energy between lateral
57      melting/freezing and thinning/thickening ; old code using step function
58      still available with #undef THSICE_FRACEN_POWERLAW
59      update output of exp: aim.5l_cs.thSI, global_ocean.cs32x15.icedyn & .thsice
60    o testreport: change AD testing : check against results/output_adm.txt
61      using same scripts as for forward test.
62    
63    checkpoint59g
64    o adjoint testing: in preparation for changing testreport:
65      - output format: cost and grad written on separated lines
66      - ad output results in directory "results" (instead of "results_ad")
67    o pkg/seaice: adding ice salinity HSALT as a prognostic variable
68  o pkg/seaice: changes for using pkg/seaice with pkg/obcs  o pkg/seaice: changes for using pkg/seaice with pkg/obcs
69  o pkg/ecco: allow user defined cost function contributions  o pkg/ecco: allow user defined cost function contributions
70  o testreport:  o testreport:
71    Allow to choose (per experiment) the list of tested output variables    Allow to choose (per experiment) the list of tested output variables
72     and the main variable (used to issue a pass/FAIL ) ;     and the main variable (used to issue a pass/FAIL ) ;
73    - for now, done by adding the specific list in file: [exp]/input/tr_checklist    - for now, done by adding the specific list in file: [exp]/input/tr_checklist
74    - default is unchange: >cg2d< , (T,S,U,V,5 tracers)_[min,max,mean,StD] ;    - default is unchanged: >cg2d< , (T,S,U,V,5 tracers)_[min,max,mean,StD] ;
75    Also modify printing of summary:    Also modify printing of summary:
76     a) ">" NN "<" indicates the "main" variable (used for pass/FAIL)     a) ">" NN "<" indicates the "main" variable (used for pass/FAIL)
77     b) echo the list of tested variables in the individual summary.txt of     b) echo the list of tested variables in the individual summary.txt of
# Line 273  o in FFIELDS.h: Line 334  o in FFIELDS.h:
334       ATMOSPHERIC_LOADING is #define).       ATMOSPHERIC_LOADING is #define).
335  o pkg/kpp: replaced _KPP_RL with _RL  o pkg/kpp: replaced _KPP_RL with _RL
336  o bug fixes for vertical diffusivity computations when both KPP and  o bug fixes for vertical diffusivity computations when both KPP and
337      3D diffusivity arrays are used.      3D diffusivity arrays are used; pkg/kpp/kpp_calc_diff_s & _t.F
338        are no longer updating the vertical diffusivity array
339        (passed as argument) but are (re-) setting those arrays.
340  o pkg/seaice: fix bug in evp solver, while doing that  o pkg/seaice: fix bug in evp solver, while doing that
341    - change (improve?) discretization of stress computations for both    - change (improve?) discretization of stress computations for both
342      cgrid-lsr and evp solver      cgrid-lsr and evp solver
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