4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
checkpoint59d |
8 |
|
o standard name: {PKG}_DIAGNOSTICS_STATE to fill diagnostics array |
9 |
|
for {PKG} state variables, and called from DO_STATEVARS_DIAGS. |
10 |
|
(keep {PKG}_DIAGNOSTICS_FILL for non-state variables diagnostics) |
11 |
|
o pkg/gmredi (gmredi_readparms.F): add some missing "_d 0" |
12 |
|
and change default value of parameter "GM_Small_Number"; |
13 |
|
update output of exp: lab_sea (x2), cfc_example, global_ocean.90x40x15, |
14 |
|
global_ocean.cs32x15 (x4), global_ocean_ebm, global_with_exf, |
15 |
|
tutorial_global_oce_biogeo, tutorial_global_oce_latlon |
16 |
|
o pkg/ecco: cost function when applying pkg/smooth to controls |
17 |
|
o pkg/ctrl: add forcingPrecond run time parameter |
18 |
|
o pkg/seaice: |
19 |
|
- replace ZMIN=4.e8 with ZMIN=0. in dynsolver.F as in C-grid code |
20 |
|
- fix bug in metric terms of u-equation in LSR solver (implicit part), |
21 |
|
changes verification/lab_sea |
22 |
|
- rearrange implicit part of u-equation in LSR solver to make it easier to |
23 |
|
read, understand, and debug. This causes changes at the truncation level. |
24 |
|
- fix (serious) bug in the boundary conditions (sign error in the implicit |
25 |
|
part) of the LSR solver. Changes all LSR results. |
26 |
|
- fixed problem with HSNOW initialization to avoid thick snow when AREA |
27 |
|
is initilized with small values - does not change lab_sea results. |
28 |
|
- added HsnowFile initialization capability |
29 |
|
o pkg/smooth: addition to model/src and pkg/ctrl so allow |
30 |
|
initialization of pkg/smooth and application to control vector |
31 |
|
o pkg/seaice: fix another bug in the LSR no-slip boundary conditons |
32 |
|
o dependencies: pkg/profiles requires pkg/cal |
33 |
|
o pkg/profiles: |
34 |
|
- added option ALLOW_PROFILES_GENERICGRID |
35 |
|
-> pkg/profiles can thus be used with any grid (e.g. cs32x15) assuming |
36 |
|
that interpolation information (grid points and coefficients) is provided |
37 |
|
within the netcdf input files. |
38 |
|
-> sample matlab scripts can be found in MITgcm_contrib/gael |
39 |
|
that allow you to prepare netcdf input files. |
40 |
|
- also modified: cleaner include statements, cleaner error print statements, |
41 |
|
cleaner stops when error, and more tests of the netcdf input files consistency. |
42 |
|
o additional test (in global_ocean.cs32x15) using seaice+thsice pkgs. |
43 |
|
o pkg/seaice: |
44 |
|
- move seaice-diagnostics from seaice_do_diags to do_statevars_diags; this |
45 |
|
requires a new routine: seaice_diagnostics_fill.F |
46 |
|
- make sure that seaice does not move if not forced (pressure replacement |
47 |
|
method, Hibler and Ip, 1995), changes results |
48 |
|
- and new damping criterion for EVP solver according to Hunke, JCP, 2001 |
49 |
|
- SEAICE_evpDampC = > 0. turns it on (615. is the recommended value). |
50 |
|
It is turned off by default (=-1.), because it changes the results. |
51 |
|
- make it possible to read AREA from a file, too. |
52 |
|
|
53 |
|
checkpoint59c |
54 |
|
o add S/R and diagnostics for oceanic mixed-layer depth |
55 |
|
o move GMRedi call after all vertical mixing schemes (including KPP) |
56 |
|
o pkg/thsice: |
57 |
|
- ensure iceMask > iceMaskMin : this problem appeared after May-04 modifs |
58 |
|
(melt only laterally if thin ice): update output of global_ocean.cs32x15.thsice |
59 |
|
o pkg/obcs: |
60 |
|
- bug fix for balance code |
61 |
|
o pkg/seaice: |
62 |
|
- allow values of SEAICE_elasticParm > 1 |
63 |
|
- add new parameter SEAICE_evpTauRelax as an alternative |
64 |
|
to SEAICE_elasticParm |
65 |
|
- make lsr boundary conditions free slip (by default), changes result |
66 |
|
- add code for no slip boundary conditions for lsr |
67 |
|
- set minimum of zeta to zero (and not 4e8) (changes results) |
68 |
|
- add a cap on AREA after advecting AREA if seaice_growth is not called |
69 |
|
o change calculation of Visbeck K: |
70 |
|
- no longer depend on tapering scheme; instead, compute slope (limited |
71 |
|
by GM_maxSlope). this is equivalent to what was comuted before with |
72 |
|
clipping or linear tappering. |
73 |
|
- fix vertical averaging (wrong by 1/2 level) |
74 |
|
- leave the old version (but will not be maintained) within |
75 |
|
#ifdef OLD_VISBECK_CALC / #endif |
76 |
|
- update output of exp. ideal_2D_oce |
77 |
|
o change error catch in calc_r_star to improve vectorization |
78 |
|
o exf runoff and seaice: remove ALLOW_SEAICE from exf pkg files and |
79 |
|
add #define ALLOW_RUNOFF in SEAICE_OPTIONS.h (when not using exf). |
80 |
|
o adjoint: |
81 |
|
Re-organized adjoint checkpointing according to Matt Mazloff |
82 |
|
(but with modifs/completions/cleanups) |
83 |
|
Storing is now bundled into large arrays to optimized I/O |
84 |
|
(and second step in cleanup of the_main_loop) |
85 |
|
|
86 |
|
checkpoint59b |
87 |
|
o coupler (pkg/atm_ocn_coupler, pkg/ocn_compon_interf, pkg/atm2d): |
88 |
|
- export/import (between ocean & coupler) fields needed for ocean DIC. |
89 |
|
o pkg/seaice: |
90 |
|
- get rid of three more exchanges seaice_calc_viscosities (required |
91 |
|
different loop boundaries in seaice_lsr and seaice_ocean_stress) |
92 |
|
- bug fix in seaice_ocean_stress (update of lab_sea required) |
93 |
|
- reduce loop boundaries to necessary minimum also in seaice_evp |
94 |
|
- go back to the old way of computing deltaC/Z as the adjoint likes that |
95 |
|
better |
96 |
|
o Refresh of tutorial_global_oce_latlon (includes changing salinity-like |
97 |
|
passive tracer to an Age Tracer) + update output.txt |
98 |
|
o pkg/exf: |
99 |
|
- implement A-grid / C-grid selection for wind-stress input files. |
100 |
|
- clean-up exf_wind.F (remove us, use wspeed instead ; add wStress) |
101 |
|
for now, in exf_bulk_largeyeager04.F only : |
102 |
|
- change implementation for case where windspeed + 2. components wind-stress |
103 |
|
are read-in. AND use rhoConstFresh to convert evap. |
104 |
|
o pkg/seaice: |
105 |
|
- use correct EXCH_UV for wind-forcing (on A-grid). |
106 |
|
- change SEAICE_OPTIONS.h to limit the number of option combinations (regarding |
107 |
|
SEAICE_EXTERNAL_FORCING & SEAICE_EXTERNAL_FLUXES); add corresponding stops. |
108 |
|
o pkg/exf: |
109 |
|
- default EXF options are now set in EXF_OPTIONS.h (ifndef ALLOW_AUTODIFF_TAMC) |
110 |
|
EXF_INTERPOLATION: |
111 |
|
- merge global_with_exf/code version of exf_interp_read.F |
112 |
|
to the main code ; |
113 |
|
- Add new option: EXF_INTERP_USE_DYNALLOC to use Dynamical Allocation when |
114 |
|
reading the file ; Important: This options needs to be defined to recover |
115 |
|
previous code. |
116 |
|
otherwise, use fixed size array to read in (size=exf_interp_bufferSize). |
117 |
|
- no longer loose real*8 precision along the way when using exf_iprec=64. |
118 |
|
o pkg/seaice: rearrangement of common blocks (really needs more cleaning up) |
119 |
|
- change discretisation of evp-solver in order to avoid another exchange |
120 |
|
(changes lab_sea) and clean up a little |
121 |
|
- replace SQRT(MAX(deltaC,SEAICE_EPS)) by MAX(SQRT(deltaC),SEAICE_EPS) |
122 |
|
help the adjoint (this also changes the results slightly) |
123 |
|
- add a few "_d 0" where they had been missing in seaice_evp.F |
124 |
|
- cleaning up: remove unused seaice_calc_rhs.F |
125 |
|
o pkg/exf: some cleaning-up: |
126 |
|
- change various "constants" into runtime parameters |
127 |
|
- cleaned-up Large&Yeager04 routine which should eventually |
128 |
|
replace exf_bulkformulae.F (changed names of S/R and CPP) |
129 |
|
and merged various ALLOW_ATM_WIND options |
130 |
|
only used with thsice pkg (in thsice_get_exf.F): |
131 |
|
- implement fixed turbulent transfert Coeff over ice (as in Large&Yeager04) |
132 |
|
which are used when useStabilityFct_overIce=TRUE (= the default) |
133 |
|
- change default values of ice & snow emissivity and scale downward LW |
134 |
|
by ice & snow emissivity. |
135 |
|
o pkg/thsice: |
136 |
|
fix few little problems, in thsice_calc_thickn.F: |
137 |
|
- growth vertically (and not laterally) if iceFrac == iceMaskMax |
138 |
|
- melt only laterally if hIce < hThinIce (as the comments say) |
139 |
|
and in thsice_extend.F: |
140 |
|
- allow to form ice even when iceFrac == iceMaskMax (by increasing thickness) |
141 |
|
- start to form ice as soon as the minimum ice-volume is reachable. |
142 |
|
update output of test-exp: aim.5l_cs(thSI), global_ocean.cs32x15(thsice), |
143 |
|
and cpl_aim+ocn |
144 |
o pkg/kpp |
o pkg/kpp |
|
- remove wrong (within bi,bj loops) EXCH calls. |
|
|
- little cleaning (add argument myThid in last position, cvs header ...) |
|
145 |
- move computation of surface related input fields to KPP into a new |
- move computation of surface related input fields to KPP into a new |
146 |
subroutine kpp_forcing_surf.F |
subroutine kpp_forcing_surf.F |
147 |
|
- remove wrong (within bi,bj loops) EXCH calls. |
148 |
|
- little cleaning (add argument myThid in last position, cvs header ...) |
149 |
|
- for now, fix conservation problem by exchanging KPPviscAz (may not |
150 |
|
be the best fix) |
151 |
o pkg/seaice |
o pkg/seaice |
152 |
- check for inconsistent evp parameter/cpp-flag combination |
- check for inconsistent evp parameter/cpp-flag combination |
153 |
- remove leftover errIO flat for obsolete name list error handling |
- remove leftover errIO flat for obsolete name list error handling |
154 |
|
o OpenAD |
155 |
|
- changed verification/OpenAD to full baroclinic setup (including GM/Redi) |
156 |
|
|
157 |
checkpoint59a |
checkpoint59a |
158 |
o pkg/seaice: some parameter clarifications and a little bit of clean up |
o pkg/seaice: some parameter clarifications and a little bit of clean up |