--- MITgcm/doc/tag-index 2002/02/11 23:19:33 1.53.4.6 +++ MITgcm/doc/tag-index 2002/05/01 01:35:30 1.71 @@ -1,33 +1,86 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.53.4.6 2002/02/11 23:19:33 heimbach Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.71 2002/05/01 01:35:30 jmc Exp $ Notes on tags used in MITgcmUV ============================== -ecco_c44_e16 -o new ECCO checkpoint, the first since ecco_c43_e15 - which is branched from MITgcm. - All changes were merged in between (see ecco-branch-mod? tags). -o last changes: - * assuming path for TAF and TAMC are known (e.g. in $path) - * genmake: - - added tools/xmakedepend to circumvene shortcoming of - SUN's makedepend (size too small) - - invoking ../tools/xmakedepend instead of makedepend - - changed compiler flags for case SunOS - -ecco-branch-mod5 -o mod's to reproduce open boundary run -o enable field swapping for OB's and climatology -o update store directives for OB control -o added option ALLOW_OBCS_PRESCRIBE -o call of getobcs now out of obcs_calc (param. list modified) - -ecco-branch-mod4 -o this is the second part of changes necessary to reconcile - the natl_box_adjoint verification (with and without grdchk). - >>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< - >>>!!! AND ecco-branch-mod4 !!!<<< - >>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< +checkpoint45a_post +o compute Rho over the whole domain (extend iMin,jMin indices) +o specific exchange for X-slice domain (case Ny=1) +o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code +o solve_for_pressure : set cg2d_x to zero where OBCS are applied + +checkpoint44h_post = checkpoint45 +o Fix to restore differentiability: + place at which packages_init_variables is called in + initialise_varia is crucial for reverse control flow. +o modifications in GMRedi to enable stable adjoint + (corresponding modif's in thermodynamics, dynamics) +o added missing hook for sponge layer code in external_forcing +o modified test cost functions +o storing in gad_advection (plus removal of write(0,*)! +o missing headers TR1.h added in convective_adjustment routines +o errorMessageUnit set non-equal zero in eeboot + (conflict on some platforms, e.g. IBM SP3) +o modified carbon verif. + +checkpoint44h_pre +o vertical grid option: allow to put the Interface at the middle between + 2 cell-centers ; replace delZ in pkg/kpp by drF. +o GM Advective form: Tracers are advected using the residual transport (= + Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. + +checkpoint44g_post +o fix surface correction term in multiDimAdvection (affects plume_on_slope + results) ; ifdef missing in thermodynamics.F + +checkpoint44f_pre,checkpoint44f_post +o added PTRACERS package + This allows an arbitrary number of passive tracers to be integrated + forward simultaneously with the dynamicaly model. + + Implemented so far: + - basic forward algorithm (time-stepping, advection, diffusion, convection) + - I/O and checkpointing + - GM/Redi *but* using the GM/Redi coefficient of Salt + + Not implemented so far: + - KPP + - OBCS + + No specific example supplied (yet) but global_ocean.90x40x15 has the + necessary data.ptracer file. Simply use -enable=ptracers and uncomment + line in data.pkg. + + This package is disabled by default since it increases storage. + + +o testscript: added -cleanup option +o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter + b) enable to filter 2D fields. + +checkpoint44e_pre,post +o re-wrote convective adjustment to use pre-calculated weights + Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F + Adds: model/src/convective_weights.F, convectively_mixtracer.F + Original calls to convect() still in place. + +chkpt44d_pre,post +o added missing EXCLUDE_MONITOR flags +o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi + (incompatible typ in MIN/MAX expressions caused problems + on IBM SP3) +o in genmake added variable MAKEDEPEND + plus resetting for case SunOS +o added timer_stats.c routine for IBM SP3 +o removed variables in dynamics +!!! I forgot to create tag chkpt44d_pre !!! +!!! But chkpt44d_pre = chkpt44c_post !!! + +o real fresh water flux implemented with non-linear free-surface. + +chkpt44c_pre,post +o few fix (mask in shap_s2, EmPmR in external_field_load, + USE_NATURAL_BCS in solve_for_P); +o add arguments myIter & myTime to S/R obcs_calc & solve_for_P + +checkpoint44b_pre/_post +o merge of relevant stuff from the ecco-branch: - genmake: removed $S64 overwrite for case SunOS - pkg/exf: update and corrections for field swapping and obcs - pkg/ecco: parameter lists for the_model_main, the_main_loop @@ -35,41 +88,20 @@ - pkg/autodiff: added flow directives for obcs, mdsio_gl_slice updated checkpointing_lev... lists for obcs - model/src: minor changes in forward_step, plot_field + added directive for divided adjoint in the_main_loop - pkg/mdsio: added mdsio_gl_slice -ecco-branch-mod3 -o this is the first part of changes necessary to reconcile - natl_box_adjoint verification (with and without grdchk). - This set of changes is relevant for ECCO only. - The next set/tag of changes (ecco-branch-mod4) - should be merged into the main trunk. - - update some options - - parameter lists of ecco_the_model_main and ecco_the_main_loop - differed from those of the MITgcm counterparts. - -ecco-branch-mod2 -o update ecco-branch-mod1 to checkpoint44 -o exclude from updates: - - verification/ - - adjoint/ - - pkg/cost - - pkg/ctrl - - pkg/ecco - - pkg/obcs - - model/src/the_model_main.F - - model/src/the_main_loop.F +o check parameters & config (chkpt44a_pre,post) +o OBC and NonLin_FrSurf. checkpoint44 -o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) o fix bug in mom_vi_del2uv +o select when filters are applied ; add options to zonal_filter (data.zonfilt) +o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) +o update AIM experiments (NCEP input files) +o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) o added some stuff for AD -ecco-branch-mod1 -o based on c43 -o replaced packages cost, ctrl, ecco, obcs -o removed MITgcm verif.'s, added ECCO verif.'s -o added lsopt, optim for line search optimization. - checkpoint43 o added two new advection tests o added global 4x4 degree ocean test