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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o towards a standard way of dealing with multi-threading in MONITOR |
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and ${PKG}_MONITOR (all except ptracers_monitor) subroutines. |
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o Pass variable viscosities (vertical and horizontal, e.g., KPP or Leith) |
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to W momentum equation in nonhydrostatic and quasihydrostatic runs. |
| 11 |
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o make exf_monitor & seaice_monitor independant of the main (dynamics) monitor. |
| 12 |
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o pkg/seaice: fix SEAICEuseEVPpickup parameter (put it in a commom block) |
| 13 |
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o generic_advdiff: DST advection S/R : use local copy of velocity to compute CFL |
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(problems ? with gradient check in bottom_ctrl_5x5 adjoint test) |
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o tracer advection: |
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- clean-up and simplify calc_common_factors.F |
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- make a local copy of velocity and pass it (as u,v,r_Trans) to DST tracer |
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advection subroutine (but still not used within DST advection S/R) |
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o rename pkg aim_ocn_coupler to atm_ocn_coupler (later on, will be used without aim) |
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checkpoint58j_post |
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o new driver S/R: LOAD_FIELDS_DRIVER to load external forcing fields |
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from file (collects calls previously in FORWARD_STEP) |
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o move call to SEAICE_MODEL from FORWARD_STEP to DO_OCEANIC_PHYS |
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o adjoint store dir. adjusted accordingly |
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o genmake2 |
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replace target "ad_taf" by $(EXE_AD) ; add $(EXE_AD) to the make CLEAN list. |
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checkpoint58i_post |
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o pkg/seaice: add parameter that allows to scale/turn off effect of seaice |
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on wind stress (SEAICEstressFactor defaults to 1.) |
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o Total number of Timers is finite (<=40): comment out 2 non-essential one |
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in the_main_loop.F to avoid Pb (e.g., when running fizhi test) |
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o vector_invariant: fix highOrderVorticity(=4.th.Order) advection |
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on CS-grid: no longer loosing mass. |
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o exf & curvilinear-grid: no longer modify longitude xC & xG. |
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o pkg/ggl90: fix sloppy output and fix a bug |
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o pkg/seaice: added SEAICEuseEVPpickup parameter |
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- Set to false in order to start EVP solver with |
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non-EVP pickup files when using SEAICEuseEVP |
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- fix sign error in diffusion in seaice_calc_rhs |
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checkpoint58h_post |
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* Modifications for bottom topography control |
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o replace hFacC by _hFacC at various places |
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o replace ALLOW_HFACC_CONTROL by ALLOW_DEPTH_CONTROL |
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o add non-self-adjoint cg2d_nsa |
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o update autodiff support routines |
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o re-initialise hfac after ctrl_depth_ini |
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o works for 5x5 box, doesnt work for global_ocean.90x40x15 |
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* Adding verification for 5x5 box (4-layer) bottom topography control |
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checkpoint58g_post |
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o pkg/diagnostics: implement "periodic averaging diagnostics" (e.g., |
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used for mean seasonal cycle, mean diurnal cycle); add an example |
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in verification/global_ocean.cs32x15/input.thsice/data.diagnostics |
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o pkg/ggl90: |
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- add parameter (minimum surface kinetic energy) |
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- fix bug (avoiding division by zero) |
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o couple pkg/thsice to pkg/seaice: |
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- modify advection in seaice to accomodate new scalar fields to be advected |
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- only muliDimAdection scheme work with seaice/thsice |
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- mapping of thsice-variables to seaice-variables, back and forth |
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- does not break the verification experiments, but does not give the |
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desired results either |
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o pkg/seaice |
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- make (default) second order advection a bit less confusing? |
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checkpoint58f_post |
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o couple pkg/thsice and pkg/exf (as a preparation for coupling pkg/thsice |
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to pkg/seaice): |
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- new routines thsice_map_exf and thsice_get_exf provide the interface |
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- add an additional formal parameter to thsice_solve4temp |
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o pkg/exf: |
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- add new fields wspeed, snowprecip (to be able to couple to thsice) |
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- correct Stefan-Boltzmann constant |
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- new parameter for longwave surface emittance |
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- separate some stuff from exf_bulkformulae into new routines |
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exf_radiation, exf_wind |
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- add new parameters and constants: longwave emissivity for ocean, ice |
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and snow, evaporation parameters over ice |
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- decouple wind/stress computation from ALLOW_BULKFORMULA: always compute |
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either wind from stress or stress from wind |
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o pkg/thSIce: |
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- split thsice_step_fwd.F in 2 S/R: thsice_step_temp.F & thsice_step_fwd.F |
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- put i,j loops inside S/R: THSICE_ALBEDO, THSICE_SOLVE4TEMP, THSICE_EXTEND |
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and THSICE_CALC_THICKN |
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- for now, call to THSICE_GET_BULKF remains inside i,j loops. |
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- add CPP option: ALLOW_DBUG_THSICE and header file THSICE_DEBUG.h |
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to make debugging easier. |
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- affects results (@ truncation level) of global_ocean.cs32x15.thsice: update output |
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o pkg/bulk_force: |
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- clean-up comments and parameters ; |
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- add new Bulk-Formulae from Large and Yeager, 2004, NCAR/TN-460+STR ; |
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o fix bug in aim+thsice albedo: snow & ice thickness arguments were switched; |
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generate new output for test-experiment: aim.5l_cs.thSI |
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o results_ad : rename "output.txt_adm" to "output_adm.txt" and change |
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testreport accordingly |
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checkpoint58e_post |
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o SEAICE_CGRID adjoint done |
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o R_STAR adjoint implemented. |
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* Seems to just work (based on global_ocean.90x40x15/code_ad_nlfs/ ) |
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* need to sort out init. of h0facc, etc. |
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o Make pkg/profile fully independent of ecco,cost, etc. stuff |
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to be able to use it in pure forward. |
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checkpoint58d_post |
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o upgrade simple test-experiment to tutorial example: |
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step.1: duplicate the experiment and (step.2) will remove the old copy. |
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tutorial_barotropic_gyre <- copy of exp0 (R1:barotropic_gyre_in_a_box) |
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tutorial_baroclinic_gyre <- copy of exp1 (R1:baroclinic_gyre_on_a_sphere) |
| 113 |
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tutorial_global_oce_latlon <- empty for now (R1:global_ocean_circulation) |
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tutorial_global_oce_biogeo <- copy of dic_example |
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tutorial_deep_convection <- almost like exp5 (R1:nonhydrostatic_deep_convection) |
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tutorial_plume_on_slope <- copy of plume_on_slope |
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tutorial_tracer_adjsens <- copy of carbon (R1:tracer_adjoint_sensitivity) |
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tutorial_global_oce_optim <- empty for now (David ?) |
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tutorial_global_oce_in_p <- copy of global_ocean_pressure |
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some tutorials (R1) were already checked-in under tutorial_examples in release1_branch |
| 121 |
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o correct a sign problem in cost_scat.F |
| 122 |
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o obcs and ptracers: fix boundary conditions for advections schemes |
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with larger stencil |
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o thsice adjoint: start |
| 125 |
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o mom_vecinv: add ISOTROPIC_COS_SCALING flags to mom_vi_hdissip for |
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completeness |
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o mom_fluxform: fixing the mutual use of ISOTROPIC_COS_SCALING |
| 128 |
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and COSINEMETH_III, add comments in default CPP_OPTIONS.h |
| 129 |
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o ptracers adjoint: |
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* avoid extensive recomputatations |
| 131 |
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* fix missing re-init. of gptr (missed by TAF) |
| 132 |
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o obcs: add a flag (OBCSprintDiags, defaults is true) that allows |
| 133 |
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me to turn off the excessive output to STDOUT that this package produces |
| 134 |
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o move NH metric terms & 3.D Coriolis S/R to pkg/mom_common |
| 135 |
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and add those terms in Vector-Invariant formulation. |
| 136 |
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o in ctrl pkg, if ALLOW_CAL, use monthly mean controls |
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if the control period (xx_hfluxperiod etc) is 0 |
| 138 |
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o in profiles pkg, clean routines and fix details |
| 139 |
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o in ecco pkg, reading ssh data: |
| 140 |
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fix problem in case the model does not start at iter0=0 |
| 141 |
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o fix mnc-pickup/restart for ptracers |
| 142 |
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o new package prifiles: |
| 143 |
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code to compute profile-based cost by Gael Forget |
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(modifs in ecco, ctrl, autodiff) |
| 145 |
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o Benign bug fix in initialization (spotted by M. Mazloff) of |
| 146 |
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ctrl_set_globfld_xz.F ctrl_set_globfld_yz.F |
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|
| 148 |
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checkpoint58c_post |
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o adjoint: finish NLFS adjoint and provide reference output in |
| 150 |
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verification/global_ocean.90x40x15/results_ad_nlfs |
| 151 |
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o seaice: add an EVP solver following Hunke and Dukowicz (1997) and the |
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documentation of CICE. Turn on by defining SEAICE_ALLOW_EVP in |
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SEAICE_OPTIONS.h and SEAICEuseEVP=.true. in data.seaice. Works only |
| 154 |
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with SEAICE_CGRID defined. |
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o move calendarDumps from "data" to "data.cal" and clean-up the code |
| 156 |
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with a simple call to pkg/cal S/R: CAL_TIME2WRITE |
| 157 |
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o add useEXF & useCAL flags (for now, set in hard-coded way) |
| 158 |
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o add S/R to compute NH-metrics terms & Coriolis f' in vertical momentum |
| 159 |
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(were missing in NH mode, and wrong in quasihydrostatic mode). |
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waiting for Chris updated version of calc_gw to add those CALLs. |
| 161 |
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o fix bug in quasihydrostatic S/R ; |
| 162 |
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add a test for this option: global_ocean.90x40x15.qshyd |
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o new S/R "SET_PARMS": set parameters that might depend on the use of some pkgs. |
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(called from INITIALISE_FIXED, after INI_PARMS & PACKAGES_READPARAMS) |
| 165 |
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o add on/off flag useOffLine for package OFFLINE |
| 166 |
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o seaice: |
| 167 |
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- modify advection so that it works also on the C-grid |
| 168 |
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- extend loop ranges in seaice_lsr and seaice_dynsolver; fixes |
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problem in multi-tile runs with C-grid |
| 170 |
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- add flags for clipping ice velocities and/or masking solver forcing |
| 171 |
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- fix drag (ocean on ice) formulation and a bug that caused noise in the |
| 172 |
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C-grid solver |
| 173 |
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- added a few comments to seaice_diffusion.F |
| 174 |
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- separate C-grid and B-grid versions more cleanly (UVM and seaiceMaskU/V |
| 175 |
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are now exclusive) |
| 176 |
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- add a new ocean-ice stress coupling method (Hibler and Bryan, 1987) which |
| 177 |
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required re-ordering the code a little: |
| 178 |
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+ make DAIRN global variable (defined in SEAICE) |
| 179 |
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+ move computation of the viscosities eta and zeta into a new separate |
| 180 |
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routine (because I need to recompute them in seaice_ocean_stress.F) |
| 181 |
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|
| 182 |
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checkpoint58b_post |
| 183 |
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o AIM+thSIce: fix sign of Short-Wave through the Ice ; |
| 184 |
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update output.txt of exp. aim.5l_cs.thSI |
| 185 |
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o various mnc cleanups and improvements: |
| 186 |
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+ shrink lookup tables by factor of ~4 |
| 187 |
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+ better error reporting when running out of lookup space |
| 188 |
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+ able to handle longer path/file names (up to 500 chars) |
| 189 |
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o adjoint: |
| 190 |
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- Another overhaul of store dirs. for NLFS to eliminate "hidden" recomputations. |
| 191 |
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- TBD: "hidden" mom_vecinv recomp. in dynamics |
| 192 |
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o change forcing_In_AB to affects both T,S forcing and Momentum forcing |
| 193 |
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(allow to differentiate between forcing components using new integer flags: |
| 194 |
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momForcingOutAB=1/0 & tracForcingOutAB=1/0) |
| 195 |
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and add new flag to put Dissipation tendency out of Adams-Bashforth. |
| 196 |
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o ecco |
| 197 |
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- enable trend removal from SSH anomaly obs. |
| 198 |
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o adjoint |
| 199 |
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- a fix for PmEpR when #undef EXACT_CONSERV |
| 200 |
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- fix of "hidden" recomp. in thermodynamics (no TAF warnings) |
| 201 |
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- try to fix "hidden" recomp. in forward_step for NLFS |
| 202 |
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(NLFS seems broken sometimes after I checked it in) |
| 203 |
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o seaice: |
| 204 |
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- add c-grid version of the dynamic solver: |
| 205 |
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+ three new routines that are the c-grid substitute lsr, dynsolver |
| 206 |
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and ostres |
| 207 |
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+ put a few fields that were local to dynsolver into global common |
| 208 |
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blocks, so that I can move the computation of stresses etc into |
| 209 |
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seaice_lsr (saves coding but may break the adjoint). |
| 210 |
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- replace more hardwired parameters by runtime parameters |
| 211 |
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- add ice masks that mask the rhs of the implicit solvers where there |
| 212 |
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is no ice (commented out in seaice_dynsolver, because i am not sure |
| 213 |
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if this works properly), eventually this should replace the clipping |
| 214 |
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of ice velocities in seaice_dynsolver to +/-40cm/s. |
| 215 |
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o remove the BUILD_INFO.h include from CPP_EEOPTIONS.h and explicitly |
| 216 |
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include it only where its needed |
| 217 |
o move balancing of fluxes before the call of external_forcing_surf |
o move balancing of fluxes before the call of external_forcing_surf |
| 218 |
o seaice: |
o seaice: |
| 219 |
- correct units of turning angles (now they are really in degrees) |
- correct units of turning angles (now they are really in degrees) |
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