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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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| 7 |
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o fix bug in aim+thsice albedo: snow & ice thickness arguments were switched; |
| 8 |
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generate new output for test-experiment: aim.5l_cs.thSI |
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o results_ad : rename "output.txt_adm" to "output_adm.txt" and change |
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testreport accordingly |
| 11 |
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| 12 |
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checkpoint58e_post |
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o SEAICE_CGRID adjoint done |
| 14 |
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o R_STAR adjoint implemented. |
| 15 |
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* Seems to just work (based on global_ocean.90x40x15/code_ad_nlfs/ ) |
| 16 |
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* need to sort out init. of h0facc, etc. |
| 17 |
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o Make pkg/profile fully independent of ecco,cost, etc. stuff |
| 18 |
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to be able to use it in pure forward. |
| 19 |
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| 20 |
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checkpoint58d_post |
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o upgrade simple test-experiment to tutorial example: |
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step.1: duplicate the experiment and (step.2) will remove the old copy. |
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tutorial_barotropic_gyre <- copy of exp0 (R1:barotropic_gyre_in_a_box) |
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tutorial_baroclinic_gyre <- copy of exp1 (R1:baroclinic_gyre_on_a_sphere) |
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tutorial_global_oce_latlon <- empty for now (R1:global_ocean_circulation) |
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tutorial_global_oce_biogeo <- copy of dic_example |
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tutorial_deep_convection <- almost like exp5 (R1:nonhydrostatic_deep_convection) |
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tutorial_plume_on_slope <- copy of plume_on_slope |
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tutorial_tracer_adjsens <- copy of carbon (R1:tracer_adjoint_sensitivity) |
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tutorial_global_oce_optim <- empty for now (David ?) |
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tutorial_global_oce_in_p <- copy of global_ocean_pressure |
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some tutorials (R1) were already checked-in under tutorial_examples in release1_branch |
| 33 |
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o correct a sign problem in cost_scat.F |
| 34 |
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o obcs and ptracers: fix boundary conditions for advections schemes |
| 35 |
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with larger stencil |
| 36 |
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o thsice adjoint: start |
| 37 |
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o mom_vecinv: add ISOTROPIC_COS_SCALING flags to mom_vi_hdissip for |
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completeness |
| 39 |
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o mom_fluxform: fixing the mutual use of ISOTROPIC_COS_SCALING |
| 40 |
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and COSINEMETH_III, add comments in default CPP_OPTIONS.h |
| 41 |
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o ptracers adjoint: |
| 42 |
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* avoid extensive recomputatations |
| 43 |
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* fix missing re-init. of gptr (missed by TAF) |
| 44 |
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o obcs: add a flag (OBCSprintDiags, defaults is true) that allows |
| 45 |
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me to turn off the excessive output to STDOUT that this package produces |
| 46 |
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o move NH metric terms & 3.D Coriolis S/R to pkg/mom_common |
| 47 |
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and add those terms in Vector-Invariant formulation. |
| 48 |
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o in ctrl pkg, if ALLOW_CAL, use monthly mean controls |
| 49 |
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if the control period (xx_hfluxperiod etc) is 0 |
| 50 |
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o in profiles pkg, clean routines and fix details |
| 51 |
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o in ecco pkg, reading ssh data: |
| 52 |
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fix problem in case the model does not start at iter0=0 |
| 53 |
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o fix mnc-pickup/restart for ptracers |
| 54 |
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o new package prifiles: |
| 55 |
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code to compute profile-based cost by Gael Forget |
| 56 |
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(modifs in ecco, ctrl, autodiff) |
| 57 |
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o Benign bug fix in initialization (spotted by M. Mazloff) of |
| 58 |
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ctrl_set_globfld_xz.F ctrl_set_globfld_yz.F |
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| 60 |
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checkpoint58c_post |
| 61 |
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o adjoint: finish NLFS adjoint and provide reference output in |
| 62 |
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verification/global_ocean.90x40x15/results_ad_nlfs |
| 63 |
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o seaice: add an EVP solver following Hunke and Dukowicz (1997) and the |
| 64 |
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documentation of CICE. Turn on by defining SEAICE_ALLOW_EVP in |
| 65 |
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SEAICE_OPTIONS.h and SEAICEuseEVP=.true. in data.seaice. Works only |
| 66 |
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with SEAICE_CGRID defined. |
| 67 |
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o move calendarDumps from "data" to "data.cal" and clean-up the code |
| 68 |
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with a simple call to pkg/cal S/R: CAL_TIME2WRITE |
| 69 |
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o add useEXF & useCAL flags (for now, set in hard-coded way) |
| 70 |
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o add S/R to compute NH-metrics terms & Coriolis f' in vertical momentum |
| 71 |
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(were missing in NH mode, and wrong in quasihydrostatic mode). |
| 72 |
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waiting for Chris updated version of calc_gw to add those CALLs. |
| 73 |
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o fix bug in quasihydrostatic S/R ; |
| 74 |
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add a test for this option: global_ocean.90x40x15.qshyd |
| 75 |
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o new S/R "SET_PARMS": set parameters that might depend on the use of some pkgs. |
| 76 |
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(called from INITIALISE_FIXED, after INI_PARMS & PACKAGES_READPARAMS) |
| 77 |
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o add on/off flag useOffLine for package OFFLINE |
| 78 |
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o seaice: |
| 79 |
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- modify advection so that it works also on the C-grid |
| 80 |
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- extend loop ranges in seaice_lsr and seaice_dynsolver; fixes |
| 81 |
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problem in multi-tile runs with C-grid |
| 82 |
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- add flags for clipping ice velocities and/or masking solver forcing |
| 83 |
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- fix drag (ocean on ice) formulation and a bug that caused noise in the |
| 84 |
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C-grid solver |
| 85 |
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- added a few comments to seaice_diffusion.F |
| 86 |
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- separate C-grid and B-grid versions more cleanly (UVM and seaiceMaskU/V |
| 87 |
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are now exclusive) |
| 88 |
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- add a new ocean-ice stress coupling method (Hibler and Bryan, 1987) which |
| 89 |
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required re-ordering the code a little: |
| 90 |
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+ make DAIRN global variable (defined in SEAICE) |
| 91 |
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+ move computation of the viscosities eta and zeta into a new separate |
| 92 |
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routine (because I need to recompute them in seaice_ocean_stress.F) |
| 93 |
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|
| 94 |
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checkpoint58b_post |
| 95 |
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o AIM+thSIce: fix sign of Short-Wave through the Ice ; |
| 96 |
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update output.txt of exp. aim.5l_cs.thSI |
| 97 |
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o various mnc cleanups and improvements: |
| 98 |
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+ shrink lookup tables by factor of ~4 |
| 99 |
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+ better error reporting when running out of lookup space |
| 100 |
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+ able to handle longer path/file names (up to 500 chars) |
| 101 |
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o adjoint: |
| 102 |
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- Another overhaul of store dirs. for NLFS to eliminate "hidden" recomputations. |
| 103 |
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- TBD: "hidden" mom_vecinv recomp. in dynamics |
| 104 |
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o change forcing_In_AB to affects both T,S forcing and Momentum forcing |
| 105 |
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(allow to differentiate between forcing components using new integer flags: |
| 106 |
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momForcingOutAB=1/0 & tracForcingOutAB=1/0) |
| 107 |
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and add new flag to put Dissipation tendency out of Adams-Bashforth. |
| 108 |
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o ecco |
| 109 |
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- enable trend removal from SSH anomaly obs. |
| 110 |
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o adjoint |
| 111 |
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- a fix for PmEpR when #undef EXACT_CONSERV |
| 112 |
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- fix of "hidden" recomp. in thermodynamics (no TAF warnings) |
| 113 |
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- try to fix "hidden" recomp. in forward_step for NLFS |
| 114 |
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(NLFS seems broken sometimes after I checked it in) |
| 115 |
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o seaice: |
| 116 |
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- add c-grid version of the dynamic solver: |
| 117 |
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+ three new routines that are the c-grid substitute lsr, dynsolver |
| 118 |
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and ostres |
| 119 |
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+ put a few fields that were local to dynsolver into global common |
| 120 |
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blocks, so that I can move the computation of stresses etc into |
| 121 |
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seaice_lsr (saves coding but may break the adjoint). |
| 122 |
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- replace more hardwired parameters by runtime parameters |
| 123 |
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- add ice masks that mask the rhs of the implicit solvers where there |
| 124 |
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is no ice (commented out in seaice_dynsolver, because i am not sure |
| 125 |
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if this works properly), eventually this should replace the clipping |
| 126 |
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of ice velocities in seaice_dynsolver to +/-40cm/s. |
| 127 |
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o remove the BUILD_INFO.h include from CPP_EEOPTIONS.h and explicitly |
| 128 |
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include it only where its needed |
| 129 |
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o move balancing of fluxes before the call of external_forcing_surf |
| 130 |
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o seaice: |
| 131 |
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- correct units of turning angles (now they are really in degrees) |
| 132 |
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- move computation of GWATX/Y out of main routine into dynsolver |
| 133 |
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- initialize GWATX/Y in seaice_init |
| 134 |
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o Apply mask on Fresh-Water flux (needed for SSH forcing). |
| 135 |
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update output.txt of exp. global_ocean_ebm & cpl_aim+ocn (affects cg2d residual) |
| 136 |
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o seaice: add runtime flags for turning angles (default to zero) |
| 137 |
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o Adding runtime parameter to exf/, ctrl/, to remove on-the-fly global mean |
| 138 |
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and trend from exf forcing and ctrl control adjustments |
| 139 |
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o fix variable aliasing in gad_calc_rhs that cannot be handled by TAF |
| 140 |
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(since checkpoint57x_post) |
| 141 |
o change the default rotation period to 86164.s = the Earth rotation |
o change the default rotation period to 86164.s = the Earth rotation |
| 142 |
o 1rst implementation of Implicit IGW using the 3-D solver (use3Dsolver=T) |
o 1rst implementation of Implicit IGW using the 3-D solver (use3Dsolver=T) |
| 143 |
and based on a reference stratification. Tested within hs94.cs-32x32x5. |
and based on a reference stratification. Tested within hs94.cs-32x32x5. |
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